Wall clock time and date at job start Tue Mar 31 2020 02:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47303 * 119.99850 * 2 1 3 5 5 H 1.09003 * 115.54757 * 325.67140 * 4 2 1 6 6 C 1.53070 * 117.51434 * 111.38920 * 4 2 1 7 7 C 1.52997 * 117.50307 * 180.02562 * 4 2 1 8 8 H 1.09007 * 117.49648 * 359.97438 * 7 4 2 9 9 C 1.50696 * 117.50285 * 144.99806 * 7 4 2 10 10 O 1.21283 * 120.00025 * 359.91251 * 9 7 4 11 11 N 1.34779 * 120.00286 * 179.91144 * 9 7 4 12 12 C 1.46922 * 120.63168 * 179.97438 * 11 9 7 13 13 C 1.53196 * 108.77606 * 233.58995 * 12 11 9 14 14 C 1.53037 * 109.31040 * 305.36550 * 13 12 11 15 15 C 1.53000 * 109.46000 * 181.38842 * 14 13 12 16 16 C 1.50697 * 109.47525 * 175.00131 * 15 14 13 17 17 H 1.08006 * 119.99782 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00499 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00430 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99738 * 359.97438 * 18 16 15 21 21 H 1.48510 * 109.46913 * 90.00053 * 20 18 16 22 22 H 1.48494 * 109.47296 * 210.00120 * 20 18 16 23 23 H 1.48493 * 109.47214 * 330.00498 * 20 18 16 24 24 C 1.53039 * 109.54101 * 61.36876 * 14 13 12 25 25 C 1.46931 * 120.62785 * 359.97438 * 11 9 7 26 26 H 1.09006 * 109.47360 * 299.99846 * 1 2 3 27 27 H 1.09004 * 109.47164 * 59.99922 * 1 2 3 28 28 H 1.08997 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47276 * 240.00163 * 2 1 3 30 30 H 1.08994 * 109.47186 * 299.99919 * 3 2 1 31 31 H 1.08996 * 109.46939 * 59.99957 * 3 2 1 32 32 H 1.08997 * 109.47122 * 179.97438 * 3 2 1 33 33 H 1.09002 * 117.49370 * 0.02562 * 6 4 2 34 34 H 1.08998 * 117.51410 * 214.95599 * 6 4 2 35 35 H 1.08999 * 109.58543 * 113.80083 * 12 11 9 36 36 H 1.08996 * 109.58946 * 353.37614 * 12 11 9 37 37 H 1.08999 * 109.50112 * 65.32084 * 13 12 11 38 38 H 1.09004 * 109.49641 * 185.41325 * 13 12 11 39 39 H 1.09006 * 109.46385 * 301.34352 * 14 13 12 40 40 H 1.09003 * 109.47050 * 294.99785 * 15 14 13 41 41 H 1.09007 * 109.47383 * 54.99849 * 15 14 13 42 42 H 0.96992 * 120.00097 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.50219 * 178.68690 * 24 14 13 44 44 H 1.08994 * 109.49826 * 58.58410 * 24 14 13 45 45 H 1.09000 * 109.57916 * 246.19424 * 25 11 9 46 46 H 1.08997 * 109.58813 * 6.62026 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4310 -0.5978 2.1448 6 6 2.7425 -2.0667 1.0517 7 6 3.5550 -0.8275 1.4346 8 1 4.1884 -0.3840 0.6663 9 6 4.0908 -0.7542 2.8412 10 8 3.3284 -0.6142 3.7740 11 7 5.4172 -0.8442 3.0627 12 6 5.9546 -0.7739 4.4282 13 6 7.0280 0.3179 4.4801 14 6 8.0808 0.0440 3.4036 15 6 9.1729 1.1131 3.4750 16 6 10.2706 0.7760 2.4992 17 1 10.1969 -0.1124 1.8893 18 6 11.3696 1.6009 2.3856 19 7 12.3273 1.3069 1.5336 20 14 11.4974 3.1369 3.4409 21 1 12.1873 2.8068 4.7140 22 1 12.2712 4.1745 2.7132 23 1 10.1354 3.6503 3.7348 24 6 7.4221 0.0795 2.0227 25 6 6.3532 -1.0146 1.9430 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 2.8416 -2.4377 0.0315 34 1 2.5958 -2.8286 1.8172 35 1 6.3961 -1.7335 4.6970 36 1 5.1522 -0.5306 5.1247 37 1 6.5679 1.2895 4.3001 38 1 7.5021 0.3156 5.4616 39 1 8.5232 -0.9383 3.5698 40 1 8.7477 2.0844 3.2221 41 1 9.5823 1.1475 4.4847 42 1 13.1002 1.8874 1.4534 43 1 8.1767 -0.0925 1.2551 44 1 6.9583 1.0533 1.8658 45 1 6.8272 -1.9939 2.0089 46 1 5.8137 -0.9302 0.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517150280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:28 Heat of formation + Delta-G solvation = -58.416043 kcal Electronic energy + Delta-G solvation = -22318.940879 eV Core-core repulsion = 19207.311044 eV Total energy + Delta-G solvation = -3111.629835 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45940 -39.35640 -38.10266 -35.68079 -34.33399 -33.96608 -32.10331 -30.34525 -28.01989 -26.88077 -25.12951 -24.09716 -23.78116 -22.74812 -21.21797 -20.63516 -19.79400 -18.85950 -18.23974 -17.09429 -16.44601 -16.33023 -15.72555 -15.54042 -15.30698 -15.04008 -14.84032 -14.63364 -14.25192 -14.18024 -13.98590 -13.60278 -13.44439 -13.34830 -13.10621 -13.00165 -12.85410 -12.42411 -12.22405 -12.10964 -12.04388 -11.99696 -11.74471 -11.55307 -11.35742 -11.27051 -11.17874 -10.96704 -10.87923 -10.74496 -10.68899 -9.63173 -8.25582 -6.26870 1.34991 1.37311 1.46770 1.47974 1.98721 2.37364 2.85137 3.10127 3.41728 3.75745 3.76778 3.89509 3.98252 4.04951 4.12607 4.15284 4.20089 4.37344 4.41121 4.45842 4.56347 4.63884 4.68217 4.79673 4.84616 4.84951 4.86891 4.90360 4.97347 5.04438 5.07669 5.09255 5.15862 5.22424 5.24055 5.29127 5.35656 5.40419 5.44492 5.54814 5.60582 5.71959 5.73764 6.34079 6.42288 6.80480 7.14423 7.37073 8.90533 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.003636 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.927418 B = 7698.958794 C = 8108.765661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.149 4.149 4 C -0.114 4.114 5 H 0.093 0.907 6 C -0.130 4.130 7 C -0.199 4.199 8 H 0.139 0.861 9 C 0.539 3.461 10 O -0.590 6.590 11 N -0.604 5.604 12 C 0.115 3.885 13 C -0.122 4.122 14 C -0.069 4.069 15 C -0.008 4.008 16 C -0.514 4.514 17 H 0.044 0.956 18 C 0.005 3.995 19 N -0.951 5.951 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.252 1.252 24 C -0.117 4.117 25 C 0.113 3.887 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.011 0.989 41 H 0.013 0.987 42 H 0.264 0.736 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.663 -4.896 -2.720 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.206 4.206 4 C -0.132 4.132 5 H 0.112 0.888 6 C -0.167 4.167 7 C -0.220 4.220 8 H 0.157 0.843 9 C 0.329 3.671 10 O -0.472 6.472 11 N -0.335 5.335 12 C -0.008 4.008 13 C -0.160 4.160 14 C -0.088 4.088 15 C -0.045 4.045 16 C -0.552 4.552 17 H 0.062 0.938 18 C -0.191 4.191 19 N -0.592 5.592 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.213 1.213 23 H -0.176 1.176 24 C -0.155 4.155 25 C -0.009 4.009 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.880 -4.765 -2.287 22.510 hybrid contribution 1.037 0.886 0.550 1.470 sum -20.844 -3.879 -1.737 21.272 Atomic orbital electron populations 1.21790 0.93970 1.02266 1.01970 1.20754 0.96465 0.95515 0.95307 1.21843 1.00917 0.96080 1.01747 1.22468 0.91018 0.99504 1.00240 0.88846 1.23197 0.99526 0.89922 1.04034 1.22325 0.96813 1.08419 0.94433 0.84309 1.20214 0.81510 0.74667 0.90723 1.90626 1.57745 1.52430 1.46350 1.48183 1.05874 1.70976 1.08468 1.21595 0.96469 0.99408 0.83297 1.21943 0.95917 0.98280 0.99902 1.20919 0.94284 0.99012 0.94592 1.19585 0.93972 0.95453 0.95481 1.21448 1.03449 1.09060 1.21285 0.93777 1.25899 0.95450 1.01203 0.96578 1.70049 1.10458 1.40171 1.38529 0.85800 0.79068 0.79552 0.79054 1.19507 1.21301 1.17626 1.21800 0.97302 0.98463 0.97910 1.21933 0.90402 0.99080 0.89449 0.93410 0.91464 0.91955 0.89404 0.91369 0.93818 0.93140 0.85073 0.89038 0.90301 0.90149 0.92877 0.90093 0.92142 0.97034 0.96844 0.92741 0.91332 0.92909 0.90293 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.17 71.98 0.66 -1.17 16 2 C -0.06 -0.91 3.07 -10.79 -0.03 -0.94 16 3 C -0.15 -2.43 9.03 71.98 0.65 -1.78 16 4 C -0.11 -2.14 4.66 -10.77 -0.05 -2.19 16 5 H 0.09 2.21 7.64 -2.39 -0.02 2.19 16 6 C -0.13 -2.09 9.89 30.63 0.30 -1.78 16 7 C -0.20 -4.14 4.33 -11.53 -0.05 -4.19 16 8 H 0.14 2.49 6.03 -2.38 -0.01 2.48 16 9 C 0.54 15.37 7.48 87.66 0.66 16.02 16 10 O -0.59 -20.92 15.67 -3.04 -0.05 -20.97 16 11 N -0.60 -16.59 2.97 -818.95 -2.43 -19.03 16 12 C 0.11 3.20 6.43 86.36 0.56 3.76 16 13 C -0.12 -3.75 5.36 30.67 0.16 -3.58 16 14 C -0.07 -2.51 2.10 -10.77 -0.02 -2.53 16 15 C -0.01 -0.34 3.52 29.85 0.10 -0.23 16 16 C -0.51 -28.28 8.94 25.60 0.23 -28.05 16 17 H 0.04 2.62 7.30 -2.91 -0.02 2.60 16 18 C 0.01 0.30 5.47 84.65 0.46 0.76 16 19 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 20 Si 0.94 44.14 27.47 68.60 1.88 46.02 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 24 C -0.12 -3.82 5.19 30.66 0.16 -3.67 16 25 C 0.11 2.83 6.34 86.35 0.55 3.38 16 26 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 1.04 7.90 -2.39 -0.02 1.02 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.88 7.28 -2.39 -0.02 0.87 16 33 H 0.13 1.41 8.05 -2.39 -0.02 1.39 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 2.36 7.01 -2.39 -0.02 2.35 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 39 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 41 H 0.01 0.60 7.57 -2.38 -0.02 0.58 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.07 2.55 6.91 -2.39 -0.02 2.54 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.11 2.13 5.51 -2.39 -0.01 2.12 16 Total: -1.00 -67.75 356.24 4.91 -62.84 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.87 Total: 15.57 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 4.34 Total: -26.19 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -2.14 Total: -77.27 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -67.75 4.91 -62.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517150280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.428 kcal (2) G-P(sol) polarization free energy of solvation -67.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds