Wall clock time and date at job start Tue Mar 31 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47195 * 2 1 4 4 C 1.53003 * 109.46768 * 120.00039 * 2 1 3 5 5 H 1.08998 * 115.55967 * 274.30302 * 4 2 1 6 6 C 1.53004 * 117.49696 * 128.62158 * 4 2 1 7 7 C 1.52999 * 59.99941 * 252.50734 * 6 4 2 8 8 H 1.09004 * 117.49385 * 107.51279 * 7 6 4 9 9 C 1.50690 * 117.49988 * 252.51012 * 7 6 4 10 10 O 1.21287 * 120.00206 * 68.60957 * 9 7 6 11 11 N 1.34780 * 120.00278 * 248.60860 * 9 7 6 12 12 C 1.46925 * 120.63213 * 179.97438 * 11 9 7 13 13 C 1.53199 * 108.77543 * 233.58626 * 12 11 9 14 14 C 1.53036 * 109.31248 * 305.36895 * 13 12 11 15 15 C 1.52997 * 109.45810 * 181.38317 * 14 13 12 16 16 C 1.50706 * 109.47238 * 174.96940 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47293 * 89.99746 * 20 18 16 22 22 H 1.48504 * 109.47104 * 209.99992 * 20 18 16 23 23 H 1.48495 * 109.47249 * 329.99739 * 20 18 16 24 24 C 1.53042 * 109.52929 * 61.37111 * 14 13 12 25 25 C 1.46929 * 120.62805 * 359.97438 * 11 9 7 26 26 H 1.08997 * 109.46898 * 300.00014 * 1 2 3 27 27 H 1.09000 * 109.46755 * 60.00200 * 1 2 3 28 28 H 1.08998 * 109.46891 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47331 * 239.99788 * 2 1 3 30 30 H 1.09002 * 109.46857 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47106 * 299.99585 * 3 2 1 32 32 H 1.09002 * 109.47154 * 59.99680 * 3 2 1 33 33 H 1.09007 * 117.49467 * 145.01657 * 6 4 2 34 34 H 1.09001 * 117.52167 * 359.97438 * 6 4 2 35 35 H 1.09000 * 109.58243 * 113.80083 * 12 11 9 36 36 H 1.09001 * 109.70646 * 353.44499 * 12 11 9 37 37 H 1.08997 * 109.49778 * 185.41271 * 13 12 11 38 38 H 1.09001 * 109.48889 * 65.31921 * 13 12 11 39 39 H 1.09002 * 109.45991 * 301.35381 * 14 13 12 40 40 H 1.09001 * 109.46832 * 54.97254 * 15 14 13 41 41 H 1.09000 * 109.47611 * 294.97551 * 15 14 13 42 42 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.49847 * 58.57742 * 24 14 13 44 44 H 1.08996 * 109.49944 * 178.67591 * 24 14 13 45 45 H 1.08989 * 109.58763 * 246.20102 * 25 11 9 46 46 H 1.09004 * 109.58242 * 6.48560 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 2.1271 -0.1061 2.1448 6 6 3.0741 -1.8314 1.0514 7 6 1.6357 -2.1853 1.4343 8 1 1.0065 -2.6349 0.6661 9 6 1.3883 -2.6663 2.8408 10 8 1.5122 -1.9015 3.7740 11 7 1.0294 -3.9465 3.0619 12 6 0.7854 -4.4304 4.4275 13 6 1.6461 -5.6742 4.6711 14 6 1.3632 -6.7074 3.5782 15 6 2.1956 -7.9646 3.8376 16 6 1.8268 -9.0272 2.8346 17 1 1.0742 -8.8256 2.0866 18 6 2.4500 -10.2564 2.8718 19 7 3.3660 -10.5019 3.7830 20 14 1.9933 -11.5732 1.6280 21 1 2.8627 -11.4462 0.4309 22 1 2.1810 -12.9149 2.2362 23 1 0.5730 -11.4053 1.2284 24 6 1.7343 -6.1229 2.2133 25 6 0.8748 -4.8847 1.9417 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.8416 -1.9466 1.8169 34 1 3.3911 -2.0485 0.0313 35 1 -0.2679 -4.6869 4.5415 36 1 1.0524 -3.6549 5.1455 37 1 1.4038 -6.0992 5.6451 38 1 2.7001 -5.3975 4.6463 39 1 0.3041 -6.9648 3.5872 40 1 1.9963 -8.3308 4.8447 41 1 3.2547 -7.7256 3.7410 42 1 3.8047 -11.3667 3.8089 43 1 2.7875 -5.8422 2.2119 44 1 1.5548 -6.8674 1.4377 45 1 -0.1711 -5.1782 1.8527 46 1 1.2003 -4.4071 1.0175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517150281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:32 Heat of formation + Delta-G solvation = -61.724738 kcal Electronic energy + Delta-G solvation = -22241.526923 eV Core-core repulsion = 19129.753612 eV Total energy + Delta-G solvation = -3111.773311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45324 -39.33579 -38.09217 -35.68971 -34.31690 -33.88513 -32.08422 -29.87891 -27.99615 -26.87411 -25.23924 -24.10906 -23.77732 -22.99052 -21.26087 -20.63015 -19.68310 -18.42718 -18.28269 -17.08983 -16.52708 -16.26386 -15.87723 -15.51924 -15.25702 -14.94604 -14.75888 -14.49657 -14.26681 -14.00863 -13.93889 -13.57509 -13.36952 -13.27964 -13.01050 -12.97482 -12.71309 -12.51040 -12.31658 -12.18283 -12.11221 -12.03008 -11.76883 -11.54100 -11.37751 -11.21497 -11.13627 -10.89688 -10.84048 -10.71955 -10.51337 -9.61763 -8.15703 -6.25518 1.42650 1.43492 1.46710 1.54170 1.98306 2.43650 2.86617 3.18185 3.42225 3.76586 3.78781 3.92354 4.02749 4.03086 4.14399 4.17829 4.21429 4.39345 4.41516 4.46809 4.57251 4.66763 4.69245 4.80688 4.85648 4.87373 4.88656 4.91710 4.99439 5.05650 5.08248 5.10588 5.24326 5.30152 5.30736 5.32717 5.40545 5.46838 5.54271 5.56173 5.60539 5.81753 5.89775 6.29068 6.43856 6.91518 7.14710 7.43522 8.96439 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026586 B = 0.003426 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.936220 B = 8171.020898 C = 8697.205710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.144 4.144 4 C -0.110 4.110 5 H 0.092 0.908 6 C -0.140 4.140 7 C -0.193 4.193 8 H 0.148 0.852 9 C 0.537 3.463 10 O -0.592 6.592 11 N -0.604 5.604 12 C 0.118 3.882 13 C -0.121 4.121 14 C -0.073 4.073 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.961 3.039 21 H -0.273 1.273 22 H -0.289 1.289 23 H -0.259 1.259 24 C -0.113 4.113 25 C 0.112 3.888 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.063 0.937 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.261 0.739 43 H 0.044 0.956 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 19.656 -10.479 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.201 4.201 4 C -0.128 4.128 5 H 0.110 0.890 6 C -0.178 4.178 7 C -0.213 4.213 8 H 0.165 0.835 9 C 0.327 3.673 10 O -0.473 6.473 11 N -0.335 5.335 12 C -0.005 4.005 13 C -0.159 4.159 14 C -0.092 4.092 15 C -0.004 4.004 16 C -0.563 4.563 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.183 1.183 24 C -0.151 4.151 25 C -0.010 4.010 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.615 19.909 -9.928 22.944 hybrid contribution 0.296 -1.330 0.331 1.402 sum -5.319 18.579 -9.597 21.577 Atomic orbital electron populations 1.21829 0.94726 1.01993 1.01819 1.20761 0.95887 0.96336 0.95044 1.21799 1.01262 0.95004 1.02050 1.22461 1.01248 0.88785 1.00343 0.89018 1.23165 0.89555 1.01208 1.03829 1.22317 1.02823 1.01800 0.94376 0.83452 1.20287 0.75015 0.81139 0.90852 1.90627 1.54567 1.55718 1.46426 1.48188 1.67192 1.09751 1.08413 1.21548 0.99831 0.95674 0.83436 1.21903 0.99137 0.95286 0.99605 1.21040 0.99561 0.94041 0.94519 1.19018 0.93794 0.92670 0.94962 1.21670 1.21335 0.98165 1.15168 0.91289 1.25992 0.95122 1.01284 0.97785 1.70125 1.27646 1.23834 1.36400 0.85497 0.79237 0.77807 0.78822 1.19840 1.21502 1.18307 1.21772 0.98903 0.96622 0.97789 1.21985 1.00887 0.89105 0.88992 0.93731 0.91272 0.92610 0.89434 0.92376 0.91278 0.93346 0.89981 0.85111 0.90059 0.90463 0.91105 0.93779 0.91814 0.99728 0.99830 0.93079 0.93681 0.90343 0.89785 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.03 71.98 0.65 -1.36 16 2 C -0.06 -0.85 3.07 -10.79 -0.03 -0.89 16 3 C -0.14 -1.82 9.18 71.98 0.66 -1.15 16 4 C -0.11 -2.11 4.66 -10.79 -0.05 -2.16 16 5 H 0.09 2.24 7.64 -2.39 -0.02 2.22 16 6 C -0.14 -2.61 9.88 30.60 0.30 -2.31 16 7 C -0.19 -4.02 4.17 -11.54 -0.05 -4.07 16 8 H 0.15 2.34 6.28 -2.38 -0.01 2.32 16 9 C 0.54 15.77 7.48 87.65 0.66 16.43 16 10 O -0.59 -21.77 15.67 -3.05 -0.05 -21.82 16 11 N -0.60 -17.14 2.97 -818.96 -2.43 -19.58 16 12 C 0.12 3.53 6.43 86.36 0.56 4.08 16 13 C -0.12 -4.19 5.36 30.67 0.16 -4.03 16 14 C -0.07 -2.81 2.10 -10.77 -0.02 -2.84 16 15 C 0.03 1.67 4.45 29.85 0.13 1.81 16 16 C -0.53 -28.43 8.39 25.60 0.21 -28.22 16 17 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 18 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 19 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 20 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.11 -3.72 5.19 30.66 0.16 -3.56 16 25 C 0.11 2.74 6.30 86.35 0.54 3.29 16 26 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.76 7.29 -2.39 -0.02 0.74 16 29 H 0.09 0.98 7.90 -2.39 -0.02 0.96 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.13 1.73 8.05 -2.39 -0.02 1.72 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 2.46 7.01 -2.39 -0.02 2.44 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 2.70 6.91 -2.39 -0.02 2.68 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.11 2.06 5.67 -2.38 -0.01 2.05 16 Total: -1.00 -68.41 360.04 5.10 -63.32 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.92 Total: 14.50 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 4.35 Total: -24.80 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -2.15 Total: -76.35 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.41 5.10 -63.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517150281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.591 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds