Wall clock time and date at job start Tue Mar 31 2020 02:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47012 * 2 1 4 4 C 1.52998 * 109.47089 * 119.99504 * 2 1 3 5 5 H 1.09007 * 115.56462 * 211.69039 * 4 2 1 6 6 C 1.53074 * 117.51473 * 357.39821 * 4 2 1 7 7 C 1.53002 * 59.98599 * 107.47386 * 6 4 2 8 8 H 1.08996 * 117.49691 * 107.49674 * 7 6 4 9 9 C 1.50696 * 117.49795 * 252.50112 * 7 6 4 10 10 O 1.21288 * 120.00147 * 101.90513 * 9 7 6 11 11 N 1.34773 * 119.99909 * 281.89694 * 9 7 6 12 12 C 1.46929 * 120.62811 * 180.02562 * 11 9 7 13 13 C 1.53194 * 108.89250 * 126.47331 * 12 11 9 14 14 C 1.53040 * 109.31448 * 54.56011 * 13 12 11 15 15 C 1.52993 * 109.46133 * 178.61597 * 14 13 12 16 16 C 1.50697 * 109.47288 * 184.99933 * 15 14 13 17 17 H 1.08001 * 119.99976 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00263 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99534 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00295 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47164 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47542 * 119.99547 * 20 18 16 23 23 H 1.48500 * 109.47015 * 239.99884 * 20 18 16 24 24 C 1.53040 * 109.53642 * 298.63871 * 14 13 12 25 25 C 1.46961 * 120.65331 * 359.82750 * 11 9 7 26 26 H 1.09000 * 109.47104 * 296.78803 * 1 2 3 27 27 H 1.08998 * 109.47247 * 56.78749 * 1 2 3 28 28 H 1.08999 * 109.47156 * 176.78410 * 1 2 3 29 29 H 1.08996 * 109.47598 * 240.00328 * 2 1 3 30 30 H 1.08995 * 109.47379 * 179.63616 * 3 2 1 31 31 H 1.08998 * 109.47299 * 299.63340 * 3 2 1 32 32 H 1.09002 * 109.47402 * 59.63406 * 3 2 1 33 33 H 1.09000 * 117.50876 * 359.97438 * 6 4 2 34 34 H 1.09000 * 117.51307 * 214.95335 * 6 4 2 35 35 H 1.08991 * 109.58888 * 6.61015 * 12 11 9 36 36 H 1.09002 * 109.58363 * 246.32911 * 12 11 9 37 37 H 1.08999 * 109.49910 * 174.51158 * 13 12 11 38 38 H 1.08997 * 109.49399 * 294.57889 * 13 12 11 39 39 H 1.09005 * 109.45890 * 58.64235 * 14 13 12 40 40 H 1.08999 * 109.47186 * 305.00048 * 15 14 13 41 41 H 1.09000 * 109.47374 * 64.99794 * 15 14 13 42 42 H 0.97000 * 119.99463 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.49582 * 181.31519 * 24 14 13 44 44 H 1.09002 * 109.49830 * 301.37866 * 24 14 13 45 45 H 1.09005 * 109.46488 * 113.74813 * 25 11 9 46 46 H 1.08994 * 109.71110 * 353.46183 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 2.9856 -0.3560 1.6501 6 6 0.9970 -1.2271 2.2490 7 6 1.7551 -2.2199 1.3656 8 1 2.5135 -2.8408 1.8425 9 6 0.9936 -2.8727 0.2409 10 8 1.1365 -2.4786 -0.8973 11 7 0.1539 -3.8947 0.4996 12 6 -0.5949 -4.5415 -0.5865 13 6 -0.3379 -6.0509 -0.5357 14 6 -0.6777 -6.5755 0.8613 15 6 -0.4551 -8.0885 0.9056 16 6 -0.9053 -8.6236 2.2405 17 1 -1.3094 -7.9516 2.9832 18 6 -0.8004 -9.9709 2.5142 19 7 -0.3078 -10.7891 1.6099 20 14 -1.3590 -10.6343 4.1686 21 1 -1.8714 -9.5173 5.0024 22 1 -2.4378 -11.6338 3.9625 23 1 -0.2116 -11.2789 4.8564 24 6 0.2231 -5.8971 1.8958 25 6 -0.0272 -4.3863 1.8727 26 1 -0.3633 0.4632 0.9174 27 1 -0.3633 0.5629 -0.8598 28 1 -0.3633 -1.0260 -0.0576 29 1 1.8934 -0.5137 -0.8900 30 1 3.1299 1.4426 0.0065 31 1 1.6820 1.9545 -0.8932 32 1 1.6713 1.9583 0.8867 33 1 -0.0524 -1.0458 2.0169 34 1 1.2567 -1.1948 3.3072 35 1 -0.2618 -4.1462 -1.5460 36 1 -1.6603 -4.3479 -0.4615 37 1 -0.9637 -6.5516 -1.2745 38 1 0.7115 -6.2487 -0.7538 39 1 -1.7209 -6.3551 1.0881 40 1 -1.0302 -8.5639 0.1110 41 1 0.6042 -8.3042 0.7663 42 1 -0.2343 -11.7370 1.8023 43 1 -0.0034 -6.2882 2.8877 44 1 1.2674 -6.0968 1.6557 45 1 -1.0459 -4.1799 2.2010 46 1 0.6789 -3.8888 2.5374 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517150282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:35 Heat of formation + Delta-G solvation = -53.078567 kcal Electronic energy + Delta-G solvation = -22670.310427 eV Core-core repulsion = 19558.912042 eV Total energy + Delta-G solvation = -3111.398385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61895 -39.40163 -37.86796 -35.68556 -34.29190 -33.66571 -32.02908 -29.84202 -28.09320 -26.80855 -25.09273 -24.37749 -24.06014 -22.91296 -21.14703 -20.31072 -19.52097 -18.42488 -18.04830 -16.97946 -16.71484 -16.50868 -15.86591 -15.40340 -15.22311 -15.13778 -14.89944 -14.51073 -14.21708 -13.93624 -13.82164 -13.59065 -13.40547 -13.15773 -12.98855 -12.70039 -12.57763 -12.51887 -12.33390 -12.20761 -12.10542 -11.89467 -11.74155 -11.69297 -11.35740 -11.24091 -11.10645 -10.85928 -10.78187 -10.52644 -10.36430 -9.55555 -8.16157 -6.25802 1.41673 1.42520 1.54903 1.63071 2.04978 2.43273 2.80026 3.17793 3.50553 3.74274 3.90615 3.97282 4.01951 4.08845 4.14580 4.22851 4.29498 4.36220 4.41657 4.49519 4.59773 4.69307 4.80016 4.81560 4.84526 4.88637 4.90865 4.96278 4.98859 5.07373 5.08484 5.11925 5.24792 5.31562 5.33527 5.35583 5.40580 5.45859 5.55465 5.60932 5.65851 5.82200 5.89737 6.29083 6.50458 6.91457 7.24054 7.43174 8.96179 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036003 B = 0.003495 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.535360 B = 8009.111928 C = 8434.720969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.114 4.114 5 H 0.128 0.872 6 C -0.144 4.144 7 C -0.201 4.201 8 H 0.139 0.861 9 C 0.542 3.458 10 O -0.574 6.574 11 N -0.605 5.605 12 C 0.119 3.881 13 C -0.121 4.121 14 C -0.073 4.073 15 C 0.032 3.968 16 C -0.524 4.524 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.961 3.039 21 H -0.255 1.255 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.114 4.114 25 C 0.117 3.883 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.063 0.937 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.260 0.740 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 22.814 2.708 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.195 4.195 4 C -0.133 4.133 5 H 0.146 0.854 6 C -0.180 4.180 7 C -0.222 4.222 8 H 0.156 0.844 9 C 0.332 3.668 10 O -0.454 6.454 11 N -0.338 5.338 12 C -0.003 4.003 13 C -0.160 4.160 14 C -0.091 4.091 15 C -0.005 4.005 16 C -0.562 4.562 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.786 3.214 21 H -0.179 1.179 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.152 4.152 25 C -0.005 4.005 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.280 22.853 2.087 23.061 hybrid contribution -0.106 -1.521 0.204 1.538 sum 2.174 21.332 2.292 21.564 Atomic orbital electron populations 1.21923 0.95769 1.00618 1.01529 1.20702 0.95463 0.96225 0.96858 1.21779 1.01072 0.94681 1.01982 1.22594 1.01137 0.91522 0.98034 0.85396 1.23389 0.98171 0.98770 0.97719 1.22219 1.04813 0.94580 1.00604 0.84373 1.20180 0.78233 0.78971 0.89443 1.90619 1.66260 1.64257 1.24304 1.48256 1.43159 1.33070 1.09271 1.21504 0.96222 0.91623 0.90974 1.21900 1.00840 0.95144 0.98071 1.21032 0.98996 0.95218 0.93872 1.19024 0.94279 0.91768 0.95429 1.21699 1.40452 0.93014 1.01054 0.91316 1.25997 0.95629 0.97829 1.00778 1.70130 1.47460 1.04043 1.36368 0.85447 0.77765 0.78575 0.79571 1.17882 1.20973 1.20854 1.21787 0.98804 0.94405 1.00215 1.21871 1.03267 0.93662 0.81732 0.91416 0.93377 0.94547 0.91709 0.92231 0.92945 0.91692 0.88109 0.85437 0.90346 0.90345 0.91226 0.93773 0.91894 0.99728 0.99849 0.93084 0.90517 0.93766 0.90114 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 7.45 71.98 0.54 -2.39 16 2 C -0.07 -1.51 2.43 -10.79 -0.03 -1.54 16 3 C -0.14 -2.12 9.15 71.98 0.66 -1.46 16 4 C -0.11 -1.99 5.73 -10.77 -0.06 -2.05 16 5 H 0.13 1.74 8.07 -2.38 -0.02 1.73 16 6 C -0.14 -2.12 8.91 30.62 0.27 -1.85 16 7 C -0.20 -4.09 4.29 -11.54 -0.05 -4.14 16 8 H 0.14 2.50 8.08 -2.39 -0.02 2.48 16 9 C 0.54 15.12 5.53 87.66 0.48 15.60 16 10 O -0.57 -19.55 12.64 -3.06 -0.04 -19.59 16 11 N -0.61 -16.71 2.98 -818.90 -2.44 -19.15 16 12 C 0.12 3.51 6.43 86.36 0.56 4.06 16 13 C -0.12 -4.18 5.36 30.67 0.16 -4.02 16 14 C -0.07 -2.80 2.10 -10.77 -0.02 -2.82 16 15 C 0.03 1.65 4.45 29.84 0.13 1.78 16 16 C -0.52 -28.45 8.39 25.60 0.21 -28.24 16 17 H 0.07 3.49 7.05 -2.91 -0.02 3.47 16 18 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 19 N -0.94 -57.13 13.29 21.45 0.28 -56.85 16 20 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 C -0.11 -3.78 5.19 30.66 0.16 -3.62 16 25 C 0.12 2.87 6.30 86.34 0.54 3.41 16 26 H 0.07 1.14 7.06 -2.39 -0.02 1.12 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.04 0.91 5.12 -2.39 -0.01 0.89 16 29 H 0.06 1.77 6.37 -2.39 -0.02 1.75 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.61 5.81 -2.39 -0.01 1.59 16 34 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 2.43 7.00 -2.39 -0.02 2.41 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 40 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.08 2.67 6.91 -2.38 -0.02 2.65 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.08 1.78 8.14 -2.38 -0.02 1.77 16 46 H 0.11 2.08 6.04 -2.39 -0.01 2.07 16 Total: -1.00 -67.19 348.60 4.79 -62.40 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.93 Total: 15.01 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 4.02 Total: -27.11 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.16 Total: -76.00 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.19 4.79 -62.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517150282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.320 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds