Wall clock time and date at job start Tue Mar 31 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00157 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00386 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 89.99562 * 9 7 5 11 11 H 1.48494 * 109.47201 * 210.00305 * 9 7 5 12 12 H 1.48506 * 109.46710 * 330.00066 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 H 1.09001 * 115.54758 * 34.32883 * 17 15 14 19 19 C 1.52998 * 117.49753 * 248.62813 * 17 15 14 20 20 C 1.52992 * 117.50304 * 180.02562 * 17 15 14 21 21 H 1.09006 * 117.49573 * 359.97438 * 20 17 15 22 22 C 1.53003 * 117.50170 * 214.98254 * 20 17 15 23 23 C 1.53778 * 113.61507 * 157.49498 * 22 20 17 24 24 C 1.53778 * 87.08134 * 220.01561 * 23 22 20 25 25 C 1.53781 * 113.61553 * 59.99551 * 22 20 17 26 26 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 31 31 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 32 32 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 34 34 H 0.96996 * 120.00642 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 36 36 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 37 37 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 38 38 H 1.08998 * 117.50110 * 359.97438 * 19 17 15 39 39 H 1.09004 * 117.49475 * 145.02172 * 19 17 15 40 40 H 1.09000 * 112.84558 * 288.80448 * 22 20 17 41 41 H 1.08998 * 113.61547 * 334.56872 * 23 22 20 42 42 H 1.09001 * 113.61390 * 105.47011 * 23 22 20 43 43 H 1.09001 * 113.61997 * 270.88620 * 24 23 22 44 44 H 1.08997 * 113.61460 * 139.97706 * 24 23 22 45 45 H 1.08998 * 113.61701 * 254.53535 * 25 22 20 46 46 H 1.09002 * 113.61410 * 25.43553 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9451 -2.0003 -3.9035 10 1 2.0866 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5702 -1.4804 3.7807 17 6 1.3655 0.2124 4.9000 18 1 0.3733 0.6551 4.8123 19 6 2.3914 0.9433 5.7683 20 6 1.7651 -0.3626 6.2602 21 1 2.3948 -1.2524 6.2652 22 6 0.7415 -0.2723 7.3938 23 6 0.9649 -1.3068 8.5094 24 6 -0.5633 -1.4717 8.5548 25 6 -0.5788 -1.0004 7.0910 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 3.1300 -0.7208 -1.2496 33 1 1.6767 -1.7489 -1.2493 34 1 1.6673 -0.1927 -5.6868 35 1 3.1301 -0.7216 1.2490 36 1 1.6768 -1.7489 1.2492 37 1 0.9939 0.7579 2.3564 38 1 3.4334 0.9127 5.4499 39 1 2.0742 1.8672 6.2522 40 1 0.6049 0.7449 7.7607 41 1 1.4910 -2.2015 8.1763 42 1 1.3855 -0.8821 9.4209 43 1 -1.0567 -0.7828 9.2404 44 1 -0.8875 -2.5042 8.6844 45 1 -1.4044 -0.3283 6.8573 46 1 -0.4748 -1.8113 6.3701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518192521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:51 Heat of formation + Delta-G solvation = -19.513620 kcal Electronic energy + Delta-G solvation = -21842.506305 eV Core-core repulsion = 18732.563405 eV Total energy + Delta-G solvation = -3109.942900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24639 -38.99403 -37.33412 -35.66083 -33.60831 -32.08014 -27.96530 -27.13633 -26.56321 -26.09366 -25.85677 -23.82992 -22.14674 -21.25808 -20.01578 -19.62022 -18.24838 -17.17077 -16.80161 -15.98676 -15.52236 -15.42950 -14.96570 -14.34641 -13.91606 -13.79751 -13.56534 -13.34473 -12.76973 -12.72660 -12.68774 -12.49369 -12.35164 -12.25684 -12.01986 -11.25690 -11.14858 -11.11301 -11.00988 -10.91456 -10.76364 -10.62264 -10.49498 -10.18481 -10.05735 -9.97550 -9.86616 -9.73753 -9.40485 -8.99774 -8.78653 -8.53898 -6.04677 -4.01970 2.59230 3.28821 3.31380 3.39374 3.43539 3.67837 4.29447 4.38700 4.43304 4.45383 4.60085 4.74985 4.80557 4.88838 5.08780 5.20198 5.27945 5.37712 5.43660 5.49108 5.52609 5.53006 5.53951 5.63466 5.65473 5.70474 5.79325 5.94566 6.06602 6.10674 6.11932 6.18948 6.26666 6.31358 6.49120 6.59028 6.70593 6.90254 7.00934 7.04538 7.19754 7.36277 7.69540 7.79808 8.39782 8.52587 8.99299 9.58053 11.08050 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035317 B = 0.002984 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.638272 B = 9382.397188 C = 9467.010962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.126 3.874 14 N -0.717 5.717 15 C 0.537 3.463 16 O -0.549 6.549 17 C -0.185 4.185 18 H 0.121 0.879 19 C -0.150 4.150 20 C -0.108 4.108 21 H 0.117 0.883 22 C -0.083 4.083 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.135 4.135 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.018 0.982 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.400 0.600 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 1.611 24.807 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.003 3.997 14 N -0.368 5.368 15 C 0.322 3.678 16 O -0.427 6.427 17 C -0.206 4.206 18 H 0.139 0.861 19 C -0.187 4.187 20 C -0.127 4.127 21 H 0.135 0.865 22 C -0.101 4.101 23 C -0.170 4.170 24 C -0.182 4.182 25 C -0.172 4.172 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.164 0.894 24.656 24.767 hybrid contribution 0.248 -0.407 -0.493 0.686 sum -1.916 0.486 24.163 24.244 Atomic orbital electron populations 1.21778 0.94802 1.01242 1.00774 1.20688 0.95817 0.95917 0.93897 1.21769 1.00435 0.95587 1.00787 1.19595 0.96287 0.95500 0.92637 1.21078 1.31814 1.13338 0.88612 0.90391 1.25001 0.95710 0.96757 0.95986 1.69901 1.45969 1.40572 0.97880 0.86857 0.81340 0.83918 0.77650 1.20370 1.21497 1.18998 1.21635 0.98848 0.96011 0.83239 1.46096 1.53283 1.31778 1.05595 1.19646 0.80089 0.84036 0.83980 1.90678 1.38616 1.26514 1.86877 1.22255 1.01154 1.06139 0.91067 0.86121 1.23056 0.97936 0.96253 1.01488 1.22371 1.00379 0.98191 0.91729 0.86465 1.22189 0.94510 0.98933 0.94466 1.22947 0.96443 0.99273 0.98381 1.22821 0.96683 1.01539 0.97190 1.22932 0.96985 1.00403 0.96913 0.95006 0.90862 0.93429 0.93428 0.90877 0.94961 0.96370 0.96817 0.92793 0.91912 0.91902 0.76454 0.88333 0.87955 0.89064 0.89845 0.91542 0.90339 0.91473 0.91582 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.06 -1.15 0.54 -154.50 -0.08 -1.23 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.67 8.20 -34.44 -0.28 -13.95 16 6 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 9 Si 0.87 21.57 27.47 -169.99 -4.67 16.91 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.13 2.13 4.56 -4.04 -0.02 2.12 16 14 N -0.72 -10.12 4.96 -60.30 -0.30 -10.42 16 15 C 0.54 7.82 7.61 -10.98 -0.08 7.74 16 16 O -0.55 -10.12 16.26 5.55 0.09 -10.03 16 17 C -0.18 -1.96 5.71 -91.78 -0.52 -2.48 16 18 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.15 -1.37 9.92 -26.75 -0.27 -1.63 16 20 C -0.11 -1.06 5.06 -90.65 -0.46 -1.52 16 21 H 0.12 1.38 7.50 -51.93 -0.39 0.99 16 22 C -0.08 -0.65 3.88 -89.81 -0.35 -0.99 16 23 C -0.13 -0.98 7.63 -25.92 -0.20 -1.18 16 24 C -0.14 -1.01 8.08 -25.92 -0.21 -1.21 16 25 C -0.13 -1.07 7.45 -25.92 -0.19 -1.26 16 26 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 27 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 31 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 32 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 33 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.40 4.80 6.16 -40.82 -0.25 4.55 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.10 0.72 8.13 -51.93 -0.42 0.30 16 40 H 0.09 0.62 8.07 -51.93 -0.42 0.21 16 41 H 0.08 0.66 7.98 -51.93 -0.41 0.25 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -30.82 360.05 -9.12 -39.94 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.19 Total: 2.47 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.25 Total: -17.81 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.47 Total: -36.90 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.82 -9.12 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518192521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.423 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds