Wall clock time and date at job start Tue Mar 31 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 5 5 C 1.50700 * 109.47008 * 59.99579 * 4 2 1 6 6 H 1.07997 * 120.00362 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99653 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00157 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00386 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47111 * 89.99562 * 9 7 5 11 11 H 1.48494 * 109.47201 * 210.00305 * 9 7 5 12 12 H 1.48506 * 109.46710 * 330.00066 * 9 7 5 13 13 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 14 14 N 1.46498 * 109.47059 * 299.99645 * 13 2 1 15 15 C 1.34777 * 119.99828 * 179.72339 * 14 13 2 16 16 O 1.21283 * 120.00222 * 0.28168 * 15 14 13 17 17 C 1.50703 * 120.00290 * 180.27728 * 15 14 13 18 18 H 1.09001 * 115.54758 * 34.32883 * 17 15 14 19 19 C 1.52998 * 117.49753 * 248.62813 * 17 15 14 20 20 C 1.52992 * 117.50304 * 180.02562 * 17 15 14 21 21 H 1.09006 * 117.49573 * 359.97438 * 20 17 15 22 22 C 1.53003 * 117.50170 * 214.98254 * 20 17 15 23 23 C 1.53778 * 113.61507 * 157.49498 * 22 20 17 24 24 C 1.53778 * 87.08134 * 220.01561 * 23 22 20 25 25 C 1.53781 * 113.61553 * 59.99551 * 22 20 17 26 26 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 28 28 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 31 31 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 32 32 H 1.08990 * 109.47021 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.46620 * 300.00017 * 4 2 1 34 34 H 0.96996 * 120.00642 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47066 * 179.97438 * 13 2 1 36 36 H 1.08994 * 109.46974 * 60.00060 * 13 2 1 37 37 H 0.97001 * 120.00384 * 0.02562 * 14 13 2 38 38 H 1.08998 * 117.50110 * 359.97438 * 19 17 15 39 39 H 1.09004 * 117.49475 * 145.02172 * 19 17 15 40 40 H 1.09000 * 112.84558 * 288.80448 * 22 20 17 41 41 H 1.08998 * 113.61547 * 334.56872 * 23 22 20 42 42 H 1.09001 * 113.61390 * 105.47011 * 23 22 20 43 43 H 1.09001 * 113.61997 * 270.88620 * 24 23 22 44 44 H 1.08997 * 113.61460 * 139.97706 * 24 23 22 45 45 H 1.08998 * 113.61701 * 254.53535 * 25 22 20 46 46 H 1.09002 * 113.61410 * 25.43553 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 1.4331 0.1387 -4.8058 9 14 2.9451 -2.0003 -3.9035 10 1 2.0866 -3.2111 -3.9494 11 1 3.7374 -1.9074 -5.1560 12 1 3.8651 -2.0897 -2.7412 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8728 -0.4943 3.6694 16 8 2.5702 -1.4804 3.7807 17 6 1.3655 0.2124 4.9000 18 1 0.3733 0.6551 4.8123 19 6 2.3914 0.9433 5.7683 20 6 1.7651 -0.3626 6.2602 21 1 2.3948 -1.2524 6.2652 22 6 0.7415 -0.2723 7.3938 23 6 0.9649 -1.3068 8.5094 24 6 -0.5633 -1.4717 8.5548 25 6 -0.5788 -1.0004 7.0910 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9564 0.8899 32 1 3.1300 -0.7208 -1.2496 33 1 1.6767 -1.7489 -1.2493 34 1 1.6673 -0.1927 -5.6868 35 1 3.1301 -0.7216 1.2490 36 1 1.6768 -1.7489 1.2492 37 1 0.9939 0.7579 2.3564 38 1 3.4334 0.9127 5.4499 39 1 2.0742 1.8672 6.2522 40 1 0.6049 0.7449 7.7607 41 1 1.4910 -2.2015 8.1763 42 1 1.3855 -0.8821 9.4209 43 1 -1.0567 -0.7828 9.2404 44 1 -0.8875 -2.5042 8.6844 45 1 -1.4044 -0.3283 6.8573 46 1 -0.4748 -1.8113 6.3701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518192521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:50 Heat of formation + Delta-G solvation = -36.717208 kcal Electronic energy + Delta-G solvation = -21843.252308 eV Core-core repulsion = 18732.563405 eV Total energy + Delta-G solvation = -3110.688903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25482 -39.87125 -38.70696 -36.52123 -35.20218 -33.96813 -29.82714 -28.29523 -28.00038 -26.97554 -26.43130 -25.12649 -23.70774 -22.01320 -21.13476 -20.22912 -19.70729 -18.91591 -18.20499 -17.00229 -16.50911 -16.33154 -16.14477 -16.01672 -15.31055 -15.18133 -15.06309 -14.31204 -14.21597 -14.17170 -13.85125 -13.40561 -13.29545 -13.26985 -12.95360 -12.84832 -12.70087 -12.60419 -12.31912 -12.18214 -11.86415 -11.78895 -11.54326 -11.51391 -11.36532 -11.29916 -10.96118 -10.88530 -10.85447 -10.71799 -10.58879 -10.05678 -8.23694 -6.23751 1.34364 1.37209 1.47163 1.51589 2.18900 2.37712 2.85909 3.11625 3.59573 3.69978 3.78816 3.89168 3.96656 4.00464 4.03681 4.14760 4.15446 4.20062 4.31027 4.55328 4.62354 4.68677 4.74719 4.84984 4.91217 4.92006 4.93492 4.93715 5.00770 5.07158 5.08181 5.13604 5.14499 5.27832 5.29442 5.35800 5.39085 5.41541 5.47730 5.54775 5.67811 5.69339 5.75213 6.36648 6.59929 6.83038 7.27330 7.39043 8.91856 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035317 B = 0.002984 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.638272 B = 9382.397188 C = 9467.010962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 C -0.123 4.123 4 C -0.004 4.004 5 C -0.501 4.501 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.253 1.253 13 C 0.138 3.862 14 N -0.707 5.707 15 C 0.533 3.467 16 O -0.593 6.593 17 C -0.188 4.188 18 H 0.148 0.852 19 C -0.135 4.135 20 C -0.111 4.111 21 H 0.090 0.910 22 C -0.076 4.076 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.139 4.139 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.413 0.587 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 2.348 27.547 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.058 4.058 3 C -0.181 4.181 4 C -0.042 4.042 5 C -0.539 4.539 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.758 3.242 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.177 1.177 13 C 0.014 3.986 14 N -0.358 5.358 15 C 0.321 3.679 16 O -0.474 6.474 17 C -0.209 4.209 18 H 0.165 0.835 19 C -0.172 4.172 20 C -0.130 4.130 21 H 0.108 0.892 22 C -0.094 4.094 23 C -0.174 4.174 24 C -0.178 4.178 25 C -0.176 4.176 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.032 0.968 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.251 0.749 38 H 0.104 0.896 39 H 0.152 0.848 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.578 1.650 27.417 27.587 hybrid contribution 0.355 -0.611 -1.311 1.490 sum -2.223 1.040 26.105 26.221 Atomic orbital electron populations 1.21706 0.93822 1.01212 1.01351 1.20549 0.96542 0.96149 0.92538 1.21698 1.00183 0.94825 1.01355 1.19575 0.95900 0.95475 0.93265 1.21358 1.30251 1.12308 0.90020 0.92836 1.25821 0.97431 0.99857 0.95915 1.70035 1.48122 1.42627 0.98431 0.85909 0.79893 0.80462 0.77890 1.19719 1.21373 1.17730 1.21264 0.98106 0.95525 0.83707 1.45931 1.53234 1.31928 1.04731 1.20352 0.79106 0.83487 0.84928 1.90663 1.40657 1.28622 1.87504 1.22257 1.02660 1.06738 0.89225 0.83474 1.23173 0.96938 0.97011 1.00069 1.22347 1.00776 0.97774 0.92077 0.89202 1.22229 0.93543 1.00005 0.93596 1.22955 0.96853 0.98839 0.98782 1.22835 0.96309 1.01826 0.96832 1.22919 0.97495 1.00122 0.97085 0.91189 0.93480 0.93780 0.93800 0.93489 0.91166 0.96821 0.96977 0.92831 0.93007 0.92971 0.74855 0.89556 0.84820 0.87003 0.91215 0.90414 0.88822 0.91737 0.90516 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.11 8.05 71.99 0.58 -3.53 16 2 C -0.06 -2.04 0.54 -52.18 -0.03 -2.07 16 3 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 5 C -0.50 -27.30 8.20 25.60 0.21 -27.09 16 6 H 0.05 3.13 5.92 -2.91 -0.02 3.11 16 7 C 0.01 0.35 5.47 84.65 0.46 0.81 16 8 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 9 Si 0.93 44.74 27.47 68.60 1.88 46.63 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 13 C 0.14 4.52 4.56 86.38 0.39 4.92 16 14 N -0.71 -18.36 4.96 -463.07 -2.30 -20.66 16 15 C 0.53 14.71 7.61 87.66 0.67 15.38 16 16 O -0.59 -21.81 16.26 -3.04 -0.05 -21.86 16 17 C -0.19 -3.47 5.71 -11.54 -0.07 -3.53 16 18 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 19 C -0.13 -2.04 9.92 30.58 0.30 -1.74 16 20 C -0.11 -1.98 5.06 -10.81 -0.05 -2.03 16 21 H 0.09 2.13 7.50 -2.38 -0.02 2.11 16 22 C -0.08 -0.97 3.88 -10.27 -0.04 -1.01 16 23 C -0.14 -1.77 7.63 31.12 0.24 -1.53 16 24 C -0.14 -1.65 8.08 31.12 0.25 -1.39 16 25 C -0.14 -1.89 7.45 31.12 0.23 -1.66 16 26 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 27 H 0.05 1.82 6.62 -2.39 -0.02 1.80 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.81 6.62 -2.39 -0.02 1.80 16 31 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 32 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 33 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 34 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.41 8.42 6.16 -92.71 -0.57 7.85 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.13 1.23 8.13 -2.38 -0.02 1.21 16 40 H 0.11 1.04 8.07 -2.39 -0.02 1.02 16 41 H 0.07 1.08 7.98 -2.39 -0.02 1.06 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 Total: -1.00 -68.69 360.05 3.98 -64.71 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.32 Total: 17.72 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 3.82 Total: -28.12 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -2.00 Total: -79.08 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -68.69 3.98 -64.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518192521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.991 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds