Wall clock time and date at job start Tue Mar 31 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47116 * 2 1 4 4 N 1.46502 * 109.47129 * 239.99484 * 2 1 3 5 5 C 1.46499 * 119.99563 * 57.08312 * 4 2 1 6 6 C 1.50699 * 109.47434 * 89.99616 * 5 4 2 7 7 H 1.07993 * 119.99989 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99602 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00774 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99702 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47063 * 59.99946 * 10 8 6 12 12 H 1.48495 * 109.47194 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46978 * 300.00253 * 10 8 6 14 14 C 1.34771 * 120.00207 * 237.07683 * 4 2 1 15 15 O 1.21287 * 120.00049 * 185.72010 * 14 4 2 16 16 C 1.50703 * 119.99976 * 5.71839 * 14 4 2 17 17 H 1.09000 * 115.55126 * 30.40681 * 16 14 4 18 18 C 1.53034 * 117.50619 * 176.10310 * 16 14 4 19 19 C 1.52838 * 117.50412 * 244.71245 * 16 14 4 20 20 C 1.53157 * 117.67881 * 144.78010 * 19 16 14 21 21 C 1.53174 * 108.88062 * 268.50322 * 20 19 16 22 22 C 1.52942 * 109.45511 * 303.43463 * 21 20 19 23 23 C 1.52943 * 109.82033 * 62.98630 * 22 21 20 24 24 C 1.53148 * 117.67987 * 0.27328 * 19 16 14 25 25 H 1.08997 * 109.47317 * 60.00401 * 1 2 3 26 26 H 1.09005 * 109.46823 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47358 * 299.99805 * 1 2 3 28 28 H 1.09007 * 109.46778 * 119.99615 * 2 1 3 29 29 H 1.08999 * 109.47113 * 59.99436 * 3 2 1 30 30 H 1.08994 * 109.47532 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46720 * 299.99973 * 3 2 1 32 32 H 1.09003 * 109.46587 * 209.99770 * 5 4 2 33 33 H 1.09001 * 109.47343 * 329.99090 * 5 4 2 34 34 H 0.96993 * 120.00502 * 179.97438 * 9 8 6 35 35 H 1.08992 * 117.50709 * 214.95624 * 18 16 14 36 36 H 1.09012 * 117.49876 * 359.97438 * 18 16 14 37 37 H 1.08997 * 109.56557 * 28.32398 * 20 19 16 38 38 H 1.08997 * 109.56796 * 148.68263 * 20 19 16 39 39 H 1.09007 * 109.46931 * 183.44430 * 21 20 19 40 40 H 1.08992 * 109.47805 * 63.43435 * 21 20 19 41 41 H 1.09001 * 109.41308 * 302.87772 * 22 21 20 42 42 H 1.08998 * 109.41162 * 183.09415 * 22 21 20 43 43 H 1.09002 * 109.47311 * 177.01728 * 23 22 21 44 44 H 1.08993 * 109.47527 * 57.00739 * 23 22 21 45 45 H 1.09001 * 109.57477 * 211.31194 * 24 19 16 46 46 H 1.09003 * 109.57251 * 331.55595 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.6125 -0.2286 -2.5257 6 6 2.5977 0.7973 -3.0235 7 1 3.4415 1.0775 -2.4106 8 6 2.4216 1.3783 -4.2615 9 7 1.3937 1.0375 -5.0077 10 14 3.6433 2.6495 -4.8788 11 1 4.9950 2.0397 -4.9576 12 1 3.2317 3.1180 -6.2265 13 1 3.6740 3.8019 -3.9427 14 6 2.8411 -1.7511 -1.0733 15 8 3.3280 -2.2585 -2.0614 16 6 3.1560 -2.3063 0.2919 17 1 2.3684 -2.1963 1.0373 18 6 4.0225 -3.5659 0.3599 19 6 4.6031 -2.2136 0.7749 20 6 4.8403 -1.9675 2.2679 21 6 4.9408 -0.4587 2.5117 22 6 6.0507 0.1259 1.6368 23 6 5.7003 -0.0622 0.1600 24 6 5.6244 -1.5585 -0.1595 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9563 0.8899 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.5901 -1.0743 -3.2131 33 1 0.6202 0.2187 -2.4677 34 1 1.2697 1.4465 -5.8784 35 1 3.8053 -4.2842 1.1503 36 1 4.3645 -3.9931 -0.5829 37 1 4.0084 -2.3755 2.8418 38 1 5.7687 -2.4495 2.5743 39 1 5.1706 -0.2748 3.5613 40 1 3.9919 0.0143 2.2592 41 1 6.9896 -0.3834 1.8542 42 1 6.1586 1.1892 1.8509 43 1 6.4685 0.4028 -0.4578 44 1 4.7366 0.4029 -0.0469 45 1 6.6029 -2.0142 -0.0080 46 1 5.3135 -1.6971 -1.1950 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531909985.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:37 Heat of formation + Delta-G solvation = -54.935798 kcal Electronic energy + Delta-G solvation = -24038.429486 eV Core-core repulsion = 20926.950565 eV Total energy + Delta-G solvation = -3111.478921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53803 -39.33917 -37.54652 -35.60832 -34.88067 -32.39268 -31.75253 -29.81731 -28.38007 -28.00051 -25.86122 -23.80268 -23.61908 -22.42994 -21.94757 -20.13363 -18.93616 -18.57600 -18.22631 -16.95055 -16.59592 -16.14963 -15.61672 -15.42522 -15.18023 -14.80316 -14.67279 -14.41325 -14.18866 -13.92552 -13.62737 -13.54727 -13.34523 -13.16543 -13.08845 -12.84955 -12.71725 -12.56628 -12.55374 -12.25483 -12.12704 -12.00899 -11.92840 -11.64999 -11.48716 -11.44739 -11.07554 -10.88226 -10.61667 -10.53345 -10.34388 -9.36101 -8.19419 -6.30459 1.32056 1.36080 1.42886 1.74085 2.29120 2.44886 2.92686 3.09703 3.58140 3.74684 3.82457 3.91552 4.01925 4.07476 4.21057 4.28820 4.33808 4.40215 4.47220 4.52469 4.62135 4.79197 4.83083 4.85933 4.86652 4.91830 4.99885 5.01487 5.04886 5.09381 5.12791 5.16117 5.21964 5.24696 5.32569 5.35750 5.42449 5.44950 5.52583 5.57568 5.65987 5.71240 5.93298 6.12631 6.75555 6.89938 7.32898 7.57894 8.87623 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016688 B = 0.006687 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.414112 B = 4186.531236 C = 4544.243523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 C -0.151 4.151 4 N -0.593 5.593 5 C 0.266 3.734 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.956 3.044 11 H -0.281 1.281 12 H -0.279 1.279 13 H -0.260 1.260 14 C 0.527 3.473 15 O -0.599 6.599 16 C -0.192 4.192 17 H 0.146 0.854 18 C -0.141 4.141 19 C -0.076 4.076 20 C -0.073 4.073 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.119 4.119 24 C -0.095 4.095 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.041 0.959 32 H -0.014 1.014 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.136 0.864 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -2.876 20.936 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 C -0.209 4.209 4 N -0.323 5.323 5 C 0.145 3.855 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.781 3.219 11 H -0.207 1.207 12 H -0.204 1.204 13 H -0.185 1.185 14 C 0.317 3.683 15 O -0.481 6.481 16 C -0.212 4.212 17 H 0.163 0.837 18 C -0.178 4.178 19 C -0.077 4.077 20 C -0.110 4.110 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.157 4.157 24 C -0.133 4.133 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.004 0.996 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.760 -3.060 20.253 21.029 hybrid contribution 0.239 0.672 -1.799 1.935 sum 4.999 -2.388 18.454 19.268 Atomic orbital electron populations 1.22140 0.94458 1.02171 1.02788 1.21361 0.94931 0.93787 0.87274 1.22110 1.00611 0.95932 1.02256 1.48220 1.46668 1.29337 1.08057 1.18621 0.94860 0.92780 0.79283 1.21577 1.09961 1.21997 1.02068 0.93056 1.25766 0.97369 0.99298 0.96786 1.70038 1.30634 1.44690 1.11840 0.85649 0.78914 0.79488 0.77898 1.20718 1.20435 1.18473 1.20308 0.77746 0.79715 0.90552 1.90607 1.53185 1.62350 1.42008 1.22475 0.97666 1.05866 0.95226 0.83666 1.23130 1.00911 0.90505 1.03273 1.21604 0.90134 0.98584 0.97333 1.21237 1.03478 0.96849 0.89418 1.21553 0.98635 0.95081 1.00099 1.21453 0.99447 1.01109 0.92734 1.21531 1.00592 0.95352 0.98208 1.21217 0.98618 0.95897 0.97520 0.94331 0.92541 0.88430 0.87105 0.89291 0.93758 0.93955 0.99586 0.95623 0.92676 0.84608 0.90647 0.89454 0.89609 0.89429 0.92420 0.91017 0.91719 0.93514 0.93858 0.90379 0.94879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 9.12 71.98 0.66 -3.87 16 2 C 0.13 4.14 3.15 44.99 0.14 4.28 16 3 C -0.15 -4.92 8.55 71.98 0.62 -4.31 16 4 N -0.59 -25.91 2.39 -802.13 -1.92 -27.83 16 5 C 0.27 14.71 4.63 85.63 0.40 15.10 16 6 C -0.52 -30.26 7.84 25.60 0.20 -30.06 16 7 H 0.05 3.00 7.60 -2.91 -0.02 2.98 16 8 C 0.01 0.35 5.46 84.65 0.46 0.81 16 9 N -0.93 -57.82 13.29 21.45 0.28 -57.53 16 10 Si 0.96 46.41 29.54 68.60 2.03 48.44 16 11 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.53 23.00 6.47 87.66 0.57 23.56 16 15 O -0.60 -32.63 14.49 -3.05 -0.04 -32.68 16 16 C -0.19 -5.74 4.71 -11.58 -0.05 -5.79 16 17 H 0.15 3.38 6.65 -2.39 -0.02 3.37 16 18 C -0.14 -3.71 9.51 30.57 0.29 -3.42 16 19 C -0.08 -1.93 1.98 -52.17 -0.10 -2.03 16 20 C -0.07 -1.20 5.67 30.71 0.17 -1.02 16 21 C -0.12 -1.94 5.93 30.63 0.18 -1.76 16 22 C -0.11 -2.25 5.82 30.56 0.18 -2.07 16 23 C -0.12 -3.56 5.93 30.64 0.18 -3.37 16 24 C -0.10 -3.00 5.29 30.70 0.16 -2.83 16 25 H 0.04 1.34 6.57 -2.39 -0.02 1.32 16 26 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.11 2.80 5.46 -2.38 -0.01 2.79 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.52 6.31 -2.39 -0.02 1.51 16 31 H 0.04 1.69 6.92 -2.38 -0.02 1.67 16 32 H -0.01 -0.91 7.51 -2.39 -0.02 -0.92 16 33 H 0.03 1.45 6.28 -2.39 -0.01 1.43 16 34 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.07 2.47 7.68 -2.38 -0.02 2.46 16 37 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.04 1.52 6.31 -2.39 -0.02 1.51 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.03 1.39 5.96 -2.39 -0.01 1.37 16 Total: -1.00 -75.67 350.27 5.34 -70.33 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.94 Total: 16.06 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.05 Total: -16.78 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.63 Total: -85.36 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.04 Total: -32.68 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -75.67 5.34 -70.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531909985.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.393 kcal (2) G-P(sol) polarization free energy of solvation -75.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds