Wall clock time and date at job start Tue Mar 31 2020 00:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47078 * 2 1 4 4 C 1.53004 * 109.47012 * 175.35493 * 3 2 1 5 5 C 1.50702 * 112.85145 * 302.86602 * 4 3 2 6 6 O 1.21281 * 119.99508 * 113.80182 * 5 4 3 7 7 N 1.34767 * 119.99852 * 293.80051 * 5 4 3 8 8 C 1.46932 * 120.62868 * 174.79923 * 7 5 4 9 9 C 1.53197 * 108.77368 * 233.58602 * 8 7 5 10 10 C 1.53038 * 109.31565 * 305.36594 * 9 8 7 11 11 C 1.50702 * 109.46235 * 181.38787 * 10 9 8 12 12 H 1.08003 * 119.99690 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99703 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46882 * 60.00274 * 15 13 11 17 17 H 1.48500 * 109.47027 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47308 * 299.99986 * 15 13 11 19 19 C 1.53041 * 109.54016 * 61.36147 * 10 9 8 20 20 C 1.46934 * 120.63391 * 354.77707 * 7 5 4 21 21 C 1.53789 * 113.61379 * 74.06785 * 4 3 2 22 22 C 1.53949 * 87.02038 * 89.22720 * 21 4 3 23 23 C 1.53779 * 87.11652 * 25.36267 * 22 21 4 24 24 H 1.09005 * 109.46976 * 299.99614 * 1 2 3 25 25 H 1.08990 * 109.46906 * 60.00297 * 1 2 3 26 26 H 1.09003 * 109.46740 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47337 * 240.00110 * 2 1 3 28 28 H 1.09003 * 109.47098 * 119.99999 * 2 1 3 29 29 H 1.08999 * 109.47072 * 55.35777 * 3 2 1 30 30 H 1.08999 * 109.47587 * 295.35302 * 3 2 1 31 31 H 1.08998 * 109.58426 * 113.80103 * 8 7 5 32 32 H 1.08996 * 109.58425 * 353.37136 * 8 7 5 33 33 H 1.09004 * 109.49638 * 65.31462 * 9 8 7 34 34 H 1.08995 * 109.49788 * 185.41039 * 9 8 7 35 35 H 1.09004 * 109.45930 * 301.34310 * 10 9 8 36 36 H 0.97007 * 119.99997 * 179.97438 * 14 13 11 37 37 H 1.08994 * 109.49654 * 178.68361 * 19 10 9 38 38 H 1.09002 * 109.49146 * 58.59071 * 19 10 9 39 39 H 1.09000 * 109.58445 * 246.19537 * 20 7 5 40 40 H 1.08990 * 109.58511 * 6.62406 * 20 7 5 41 41 H 1.09003 * 113.60934 * 203.74866 * 21 4 3 42 42 H 1.08996 * 113.61134 * 334.64388 * 21 4 3 43 43 H 1.09000 * 113.53925 * 270.81039 * 22 21 4 44 44 H 1.09000 * 113.66641 * 139.93407 * 22 21 4 45 45 H 1.09002 * 113.61767 * 220.09406 * 23 22 21 46 46 H 1.08999 * 113.69187 * 89.19752 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4440 0.1168 5 6 4.0592 0.7227 1.3445 6 8 4.6970 -0.3025 1.2300 7 7 3.7920 1.2170 2.5694 8 6 4.1669 0.4683 3.7769 9 6 2.9272 0.3082 4.6625 10 6 2.3220 1.6862 4.9400 11 6 1.1219 1.5357 5.8390 12 1 0.8207 0.5555 6.1781 13 6 0.4084 2.6494 6.2286 14 7 0.7754 3.8429 5.8160 15 14 -1.0796 2.4627 7.3423 16 1 -0.6636 1.8369 8.6233 17 1 -1.6662 3.7998 7.6128 18 1 -2.0913 1.6031 6.6769 19 6 1.8929 2.3319 3.6205 20 6 3.1208 2.5150 2.7230 21 6 4.2828 1.0214 -1.1762 22 6 4.2609 2.5072 -1.5788 23 6 4.1968 2.8329 -0.0773 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6103 1.9797 0.8455 30 1 1.7462 1.9318 -0.9287 31 1 4.9369 1.0149 4.3213 32 1 4.5439 -0.5147 3.4948 33 1 2.1933 -0.3153 4.1518 34 1 3.2111 -0.1608 5.6045 35 1 3.0645 2.3173 5.4285 36 1 0.2732 4.6264 6.0898 37 1 1.4407 3.3032 3.8209 38 1 1.1687 1.6893 3.1197 39 1 3.8054 3.2284 3.1817 40 1 2.8077 2.8823 1.7458 41 1 5.2860 0.6286 -1.0106 42 1 3.6790 0.3841 -1.8221 43 1 3.3643 2.7965 -2.1270 44 1 5.1793 2.8438 -2.0597 45 1 3.5235 3.6559 0.1627 46 1 5.1758 2.9368 0.3906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541977990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:05 Heat of formation + Delta-G solvation = -53.950547 kcal Electronic energy + Delta-G solvation = -23775.844542 eV Core-core repulsion = 20664.408345 eV Total energy + Delta-G solvation = -3111.436197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01975 -39.34980 -38.11949 -35.33817 -35.03871 -33.06101 -31.78761 -29.32157 -28.03858 -26.70833 -25.88754 -24.44551 -23.77680 -22.43103 -21.86365 -20.28907 -19.30879 -18.38524 -17.73267 -17.25269 -16.58607 -16.49827 -16.03916 -15.43500 -15.22335 -14.94561 -14.66695 -14.51336 -14.36314 -14.21762 -13.62383 -13.42542 -13.30595 -13.10731 -12.97791 -12.79350 -12.72605 -12.51666 -12.43604 -12.14966 -12.12470 -11.93057 -11.86889 -11.62684 -11.46880 -11.22178 -11.08220 -11.00223 -10.82993 -10.44796 -10.31624 -9.51791 -8.07108 -6.20189 1.42658 1.43374 1.50584 1.66430 2.14568 2.44413 3.19331 3.43837 3.45802 3.73645 3.84110 3.92597 4.12766 4.17312 4.24560 4.28751 4.34077 4.44905 4.49013 4.54659 4.67372 4.75437 4.76668 4.80758 4.82264 4.87336 4.92295 4.96906 4.99846 5.07157 5.12198 5.17177 5.20909 5.24860 5.27957 5.37093 5.42907 5.46480 5.52122 5.59477 5.66723 5.99067 6.14257 6.39699 6.57042 6.88223 7.22961 7.47207 8.96177 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.005305 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.496771 B = 5277.008185 C = 5550.608295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.108 4.108 5 C 0.525 3.475 6 O -0.593 6.593 7 N -0.601 5.601 8 C 0.115 3.885 9 C -0.111 4.111 10 C 0.047 3.953 11 C -0.535 4.535 12 H 0.045 0.955 13 C 0.021 3.979 14 N -0.910 5.910 15 Si 0.946 3.054 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.275 1.275 19 C -0.110 4.110 20 C 0.110 3.890 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.128 4.128 24 H 0.041 0.959 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.001 0.999 36 H 0.262 0.738 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -0.159 -14.902 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.130 4.130 4 C -0.111 4.111 5 C 0.315 3.685 6 O -0.475 6.475 7 N -0.332 5.332 8 C -0.008 4.008 9 C -0.150 4.150 10 C 0.028 3.972 11 C -0.573 4.573 12 H 0.063 0.937 13 C -0.178 4.178 14 N -0.549 5.549 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.200 1.200 19 C -0.148 4.148 20 C -0.012 4.012 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.166 4.166 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.019 0.981 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.465 -0.491 -14.917 15.322 hybrid contribution -0.743 -0.291 1.447 1.652 sum 2.722 -0.782 -13.470 13.765 Atomic orbital electron populations 1.21726 0.94706 1.01879 1.02131 1.21436 0.96663 0.96708 1.00888 1.21541 0.89956 0.97469 1.04035 1.22287 0.97718 0.98574 0.92523 1.21059 0.78242 0.84233 0.84943 1.90587 1.42920 1.26902 1.87046 1.48236 1.58028 1.21450 1.05447 1.21558 0.96972 0.96665 0.85571 1.21835 0.95893 0.99197 0.98027 1.18589 0.94182 0.91274 0.93118 1.21474 1.13176 0.92803 1.29840 0.93691 1.25585 0.99784 0.95122 0.97321 1.69934 1.41017 0.98244 1.45742 0.85800 0.80180 0.77206 0.79566 1.20152 1.20694 1.20035 1.21748 0.95413 1.02386 0.95299 1.22104 0.94386 0.83143 1.01578 1.22842 1.00059 0.98174 0.94002 1.22832 1.03845 0.94202 0.94921 1.23084 1.00900 0.94318 0.98280 0.93960 0.90656 0.92647 0.91073 0.95597 0.91500 0.87834 0.91584 0.90671 0.94153 0.92043 0.98107 0.92869 0.90207 0.95210 0.92211 0.87658 0.91194 0.90225 0.87834 0.89887 0.89188 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.12 -3.13 5.65 30.59 0.17 -2.96 16 3 C -0.09 -2.21 4.24 30.59 0.13 -2.08 16 4 C -0.11 -2.79 0.29 -52.39 -0.02 -2.80 16 5 C 0.53 18.30 5.44 87.66 0.48 18.78 16 6 O -0.59 -24.39 15.60 -3.03 -0.05 -24.44 16 7 N -0.60 -21.70 2.97 -818.90 -2.43 -24.13 16 8 C 0.12 4.36 6.42 86.36 0.55 4.92 16 9 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 10 C 0.05 2.27 2.06 -11.51 -0.02 2.25 16 11 C -0.53 -28.86 8.56 25.60 0.22 -28.64 16 12 H 0.04 2.44 7.74 -2.91 -0.02 2.41 16 13 C 0.02 1.13 5.30 84.66 0.45 1.58 16 14 N -0.91 -49.76 11.31 21.45 0.24 -49.52 16 15 Si 0.95 42.60 29.54 68.60 2.03 44.62 16 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 C -0.11 -4.81 5.02 30.67 0.15 -4.66 16 20 C 0.11 3.85 5.25 86.36 0.45 4.30 16 21 C -0.11 -2.52 6.80 31.18 0.21 -2.30 16 22 C -0.12 -1.96 7.74 31.18 0.24 -1.72 16 23 C -0.13 -2.68 5.80 31.12 0.18 -2.50 16 24 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.69 7.43 -2.39 -0.02 1.67 16 28 H 0.03 0.86 7.16 -2.39 -0.02 0.84 16 29 H 0.07 1.82 5.62 -2.39 -0.01 1.80 16 30 H 0.10 1.83 7.31 -2.39 -0.02 1.82 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.07 2.87 7.04 -2.39 -0.02 2.86 16 33 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.26 13.69 8.31 -92.70 -0.77 12.92 16 37 H 0.08 3.90 6.03 -2.39 -0.01 3.89 16 38 H 0.03 1.33 7.93 -2.39 -0.02 1.31 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.11 3.09 3.08 -2.39 -0.01 3.08 16 41 H 0.07 1.81 7.73 -2.39 -0.02 1.80 16 42 H 0.08 1.62 7.38 -2.39 -0.02 1.60 16 43 H 0.10 1.30 7.60 -2.39 -0.02 1.28 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 1.68 7.16 -2.39 -0.02 1.66 16 46 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 Total: -1.00 -61.88 343.43 4.81 -57.07 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.94 Total: 19.53 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.08 Total: -23.14 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -2.19 Total: -73.65 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.44 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -61.88 4.81 -57.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541977990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.123 kcal (2) G-P(sol) polarization free energy of solvation -61.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds