Wall clock time and date at job start Tue Mar 31 2020 01:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46906 * 2 1 4 4 C 1.52995 * 109.47402 * 120.00074 * 2 1 3 5 5 C 1.52998 * 109.47030 * 174.75600 * 4 2 1 6 6 C 1.50706 * 115.55100 * 298.76286 * 5 4 2 7 7 O 1.21275 * 119.99667 * 112.41942 * 6 5 4 8 8 N 1.34774 * 119.99815 * 292.41769 * 6 5 4 9 9 C 1.46925 * 120.62768 * 174.79627 * 8 6 5 10 10 C 1.53192 * 108.77854 * 233.62875 * 9 8 6 11 11 C 1.53043 * 109.31088 * 305.36926 * 10 9 8 12 12 C 1.50701 * 109.45738 * 181.38254 * 11 10 9 13 13 H 1.08001 * 119.99941 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99997 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99795 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47116 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47332 * 120.00192 * 16 14 12 19 19 H 1.48498 * 109.47471 * 240.00245 * 16 14 12 20 20 C 1.53044 * 109.53787 * 61.36426 * 11 10 9 21 21 C 1.46921 * 120.63262 * 354.81848 * 8 6 5 22 22 C 1.53007 * 117.50112 * 84.43569 * 5 4 2 23 23 C 1.53007 * 117.49827 * 153.09367 * 5 4 2 24 24 H 1.08998 * 109.47024 * 299.99450 * 1 2 3 25 25 H 1.08993 * 109.47435 * 60.00064 * 1 2 3 26 26 H 1.09007 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47024 * 240.00550 * 2 1 3 28 28 H 1.09004 * 109.46886 * 65.55575 * 3 2 1 29 29 H 1.08998 * 109.47282 * 185.56120 * 3 2 1 30 30 H 1.08997 * 109.47466 * 305.56252 * 3 2 1 31 31 H 1.09005 * 109.47402 * 54.75812 * 4 2 1 32 32 H 1.08999 * 109.47455 * 294.75587 * 4 2 1 33 33 H 1.09004 * 109.58570 * 113.84555 * 9 8 6 34 34 H 1.09000 * 109.58991 * 353.41950 * 9 8 6 35 35 H 1.08995 * 109.50217 * 185.41207 * 10 9 8 36 36 H 1.08998 * 109.49485 * 65.31618 * 10 9 8 37 37 H 1.08995 * 109.45868 * 301.33825 * 11 10 9 38 38 H 0.97007 * 119.99920 * 179.97438 * 15 14 12 39 39 H 1.08992 * 109.49759 * 58.58361 * 20 11 10 40 40 H 1.09001 * 109.49290 * 178.68051 * 20 11 10 41 41 H 1.08994 * 109.58719 * 246.15504 * 21 8 6 42 42 H 1.09002 * 109.58857 * 6.58327 * 21 8 6 43 43 H 1.08996 * 117.49599 * 215.00335 * 22 5 4 44 44 H 1.09003 * 117.49202 * 0.02562 * 22 5 4 45 45 H 1.08994 * 117.49756 * 359.97438 * 23 5 4 46 46 H 1.08998 * 117.49405 * 144.99869 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5643 -0.8364 1.1849 6 6 4.1083 -1.6216 0.0193 7 8 4.7395 -1.0582 -0.8496 8 7 3.8934 -2.9499 -0.0574 9 6 4.3177 -3.7097 -1.2412 10 6 3.1159 -4.4898 -1.7833 11 6 2.5236 -5.3491 -0.6639 12 6 1.3619 -6.1438 -1.2024 13 1 1.0745 -6.0455 -2.2388 14 6 0.6658 -6.9962 -0.3718 15 7 1.0154 -7.1155 0.8903 16 14 -0.7746 -7.9808 -1.0390 17 1 -0.9631 -7.6686 -2.4787 18 1 -0.4991 -9.4312 -0.8795 19 1 -2.0065 -7.6256 -0.2896 20 6 2.0402 -4.4460 0.4732 21 6 3.2299 -3.6655 1.0409 22 6 4.3845 0.3582 1.6762 23 6 4.3228 -0.9234 2.5109 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.7601 1.9268 0.9356 29 1 3.1254 1.4442 -0.0996 30 1 1.5976 1.9844 -0.8359 31 1 1.6021 -1.7183 1.2974 32 1 1.7555 -0.1561 2.1367 33 1 5.1100 -4.4053 -0.9643 34 1 4.6822 -3.0228 -2.0050 35 1 3.4386 -5.1318 -2.6029 36 1 2.3611 -3.7909 -2.1436 37 1 3.2861 -6.0307 -0.2873 38 1 0.5255 -7.7150 1.4748 39 1 1.2956 -3.7476 0.0916 40 1 1.5973 -5.0571 1.2597 41 1 3.9335 -4.3574 1.5038 42 1 2.8766 -2.9495 1.7829 43 1 5.3173 0.5762 1.1564 44 1 3.8379 1.2260 2.0457 45 1 3.7358 -0.8983 3.4290 46 1 5.2151 -1.5487 2.5401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555951248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:15 Heat of formation + Delta-G solvation = -38.619263 kcal Electronic energy + Delta-G solvation = -23603.135882 eV Core-core repulsion = 20492.364499 eV Total energy + Delta-G solvation = -3110.771383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30675 -37.62838 -36.52000 -34.77682 -33.46396 -31.21737 -30.10497 -27.65375 -27.04626 -26.31498 -23.81299 -22.60123 -22.20191 -21.61557 -20.24172 -19.38679 -17.93211 -16.58892 -16.10069 -15.73613 -15.51191 -14.62525 -14.53369 -14.13582 -13.98273 -13.57061 -13.18358 -13.00723 -12.79165 -12.75370 -12.31273 -12.17872 -11.99553 -11.72037 -11.62696 -11.48932 -11.34616 -11.18547 -10.98235 -10.91446 -10.61905 -10.53423 -10.38432 -10.12633 -10.04663 -9.79159 -9.64910 -9.27853 -9.17571 -8.88828 -8.39210 -7.96716 -6.04430 -4.10331 2.95591 3.25884 3.34665 3.38666 3.43738 3.81251 4.39790 4.59615 4.78938 4.88111 4.93250 5.12878 5.23188 5.25673 5.37994 5.61953 5.65084 5.69320 5.72908 5.78991 5.82077 5.87885 5.92674 5.94301 6.02859 6.04765 6.11760 6.13613 6.15233 6.17364 6.30099 6.36403 6.46067 6.48669 6.50369 6.67249 6.90309 7.04839 7.16218 7.28410 7.66025 7.91304 7.97454 8.03801 8.39305 8.61940 8.93308 9.54877 11.01034 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.005329 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.681819 B = 5252.882587 C = 5714.777910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.076 4.076 5 C -0.145 4.145 6 C 0.549 3.451 7 O -0.558 6.558 8 N -0.594 5.594 9 C 0.111 3.889 10 C -0.123 4.123 11 C 0.048 3.952 12 C -0.510 4.510 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.123 4.123 21 C 0.101 3.899 22 C -0.147 4.147 23 C -0.164 4.164 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.039 0.961 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 12.708 4.001 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.113 4.113 5 C -0.148 4.148 6 C 0.336 3.664 7 O -0.437 6.437 8 N -0.325 5.325 9 C -0.011 4.011 10 C -0.161 4.161 11 C 0.030 3.970 12 C -0.548 4.548 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.161 4.161 21 C -0.021 4.021 22 C -0.184 4.184 23 C -0.202 4.202 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.121 0.879 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.080 12.876 3.694 13.745 hybrid contribution -0.893 -0.753 -0.255 1.196 sum 2.187 12.123 3.440 12.790 Atomic orbital electron populations 1.21834 0.95172 1.02122 1.01267 1.21035 0.95444 0.96387 0.98347 1.21902 1.01899 0.95675 1.00798 1.21297 0.89941 1.01865 0.98230 1.21386 0.95583 1.02649 0.95171 1.19444 0.79136 0.81795 0.85979 1.90620 1.41818 1.69862 1.41390 1.48147 1.57904 1.06748 1.19710 1.21699 0.97630 0.94558 0.87189 1.22004 0.95779 0.98364 0.99929 1.18636 0.95598 0.92159 0.90615 1.21239 1.14203 1.23175 0.96193 0.92705 1.24946 0.97348 0.96709 0.94914 1.69847 1.40799 1.37837 1.04592 0.86584 0.82570 0.79965 0.79176 1.19850 1.21062 1.21063 1.22011 0.94493 0.97443 1.02158 1.22111 0.96232 0.95476 0.88238 1.23014 1.01652 0.91753 1.02006 1.23115 1.02169 1.01110 0.93757 0.92975 0.92887 0.92248 0.91185 0.93231 0.91796 0.93307 0.90068 0.91237 0.92307 0.90523 0.92204 0.93008 0.95530 0.93060 0.94245 0.87864 0.92264 0.90765 0.88286 0.88161 0.87987 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.09 -1.25 2.82 -90.62 -0.26 -1.51 16 3 C -0.15 -1.72 8.22 37.16 0.31 -1.42 16 4 C -0.08 -0.99 4.25 -26.73 -0.11 -1.10 16 5 C -0.14 -2.01 0.46 -155.65 -0.07 -2.08 16 6 C 0.55 9.70 6.05 -10.98 -0.07 9.63 16 7 O -0.56 -11.39 16.19 5.56 0.09 -11.30 16 8 N -0.59 -10.75 2.97 -172.77 -0.51 -11.26 16 9 C 0.11 2.07 6.42 -3.71 -0.02 2.05 16 10 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 11 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 12 C -0.51 -13.44 8.56 -34.44 -0.29 -13.74 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -24.15 11.31 55.43 0.63 -23.53 16 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.12 -2.64 5.13 -26.61 -0.14 -2.78 16 21 C 0.10 1.81 5.72 -3.71 -0.02 1.79 16 22 C -0.15 -1.74 7.87 -26.69 -0.21 -1.95 16 23 C -0.16 -1.91 9.26 -26.69 -0.25 -2.16 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.14 7.42 -51.93 -0.39 0.76 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.82 6.28 -51.93 -0.33 0.50 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.17 6.18 -51.93 -0.32 0.85 16 32 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.43 7.04 -51.93 -0.37 1.06 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 39 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.10 2.49 6.03 -51.93 -0.31 2.17 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.16 4.41 -51.93 -0.23 0.94 16 43 H 0.10 1.28 8.03 -51.93 -0.42 0.86 16 44 H 0.10 1.00 7.70 -51.93 -0.40 0.60 16 45 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -28.28 350.96 -8.96 -37.24 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.21 Total: 2.76 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.22 Total: -14.88 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.11 Total: -34.79 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.28 -8.96 -37.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555951248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.379 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds