Wall clock time and date at job start Tue Mar 31 2020 01:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46906 * 2 1 4 4 C 1.52995 * 109.47402 * 120.00074 * 2 1 3 5 5 C 1.52998 * 109.47030 * 174.75600 * 4 2 1 6 6 C 1.50706 * 115.55100 * 298.76286 * 5 4 2 7 7 O 1.21275 * 119.99667 * 112.41942 * 6 5 4 8 8 N 1.34774 * 119.99815 * 292.41769 * 6 5 4 9 9 C 1.46925 * 120.62768 * 174.79627 * 8 6 5 10 10 C 1.53192 * 108.77854 * 233.62875 * 9 8 6 11 11 C 1.53043 * 109.31088 * 305.36926 * 10 9 8 12 12 C 1.50701 * 109.45738 * 181.38254 * 11 10 9 13 13 H 1.08001 * 119.99941 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99997 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99795 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00087 * 179.97438 * 14 12 11 17 17 H 1.48510 * 109.47116 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47332 * 120.00192 * 16 14 12 19 19 H 1.48498 * 109.47471 * 240.00245 * 16 14 12 20 20 C 1.53044 * 109.53787 * 61.36426 * 11 10 9 21 21 C 1.46921 * 120.63262 * 354.81848 * 8 6 5 22 22 C 1.53007 * 117.50112 * 84.43569 * 5 4 2 23 23 C 1.53007 * 117.49827 * 153.09367 * 5 4 2 24 24 H 1.08998 * 109.47024 * 299.99450 * 1 2 3 25 25 H 1.08993 * 109.47435 * 60.00064 * 1 2 3 26 26 H 1.09007 * 109.46971 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47024 * 240.00550 * 2 1 3 28 28 H 1.09004 * 109.46886 * 65.55575 * 3 2 1 29 29 H 1.08998 * 109.47282 * 185.56120 * 3 2 1 30 30 H 1.08997 * 109.47466 * 305.56252 * 3 2 1 31 31 H 1.09005 * 109.47402 * 54.75812 * 4 2 1 32 32 H 1.08999 * 109.47455 * 294.75587 * 4 2 1 33 33 H 1.09004 * 109.58570 * 113.84555 * 9 8 6 34 34 H 1.09000 * 109.58991 * 353.41950 * 9 8 6 35 35 H 1.08995 * 109.50217 * 185.41207 * 10 9 8 36 36 H 1.08998 * 109.49485 * 65.31618 * 10 9 8 37 37 H 1.08995 * 109.45868 * 301.33825 * 11 10 9 38 38 H 0.97007 * 119.99920 * 179.97438 * 15 14 12 39 39 H 1.08992 * 109.49759 * 58.58361 * 20 11 10 40 40 H 1.09001 * 109.49290 * 178.68051 * 20 11 10 41 41 H 1.08994 * 109.58719 * 246.15504 * 21 8 6 42 42 H 1.09002 * 109.58857 * 6.58327 * 21 8 6 43 43 H 1.08996 * 117.49599 * 215.00335 * 22 5 4 44 44 H 1.09003 * 117.49202 * 0.02562 * 22 5 4 45 45 H 1.08994 * 117.49756 * 359.97438 * 23 5 4 46 46 H 1.08998 * 117.49405 * 144.99869 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5643 -0.8364 1.1849 6 6 4.1083 -1.6216 0.0193 7 8 4.7395 -1.0582 -0.8496 8 7 3.8934 -2.9499 -0.0574 9 6 4.3177 -3.7097 -1.2412 10 6 3.1159 -4.4898 -1.7833 11 6 2.5236 -5.3491 -0.6639 12 6 1.3619 -6.1438 -1.2024 13 1 1.0745 -6.0455 -2.2388 14 6 0.6658 -6.9962 -0.3718 15 7 1.0154 -7.1155 0.8903 16 14 -0.7746 -7.9808 -1.0390 17 1 -0.9631 -7.6686 -2.4787 18 1 -0.4991 -9.4312 -0.8795 19 1 -2.0065 -7.6256 -0.2896 20 6 2.0402 -4.4460 0.4732 21 6 3.2299 -3.6655 1.0409 22 6 4.3845 0.3582 1.6762 23 6 4.3228 -0.9234 2.5109 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.7601 1.9268 0.9356 29 1 3.1254 1.4442 -0.0996 30 1 1.5976 1.9844 -0.8359 31 1 1.6021 -1.7183 1.2974 32 1 1.7555 -0.1561 2.1367 33 1 5.1100 -4.4053 -0.9643 34 1 4.6822 -3.0228 -2.0050 35 1 3.4386 -5.1318 -2.6029 36 1 2.3611 -3.7909 -2.1436 37 1 3.2861 -6.0307 -0.2873 38 1 0.5255 -7.7150 1.4748 39 1 1.2956 -3.7476 0.0916 40 1 1.5973 -5.0571 1.2597 41 1 3.9335 -4.3574 1.5038 42 1 2.8766 -2.9495 1.7829 43 1 5.3173 0.5762 1.1564 44 1 3.8379 1.2260 2.0457 45 1 3.7358 -0.8983 3.4290 46 1 5.2151 -1.5487 2.5401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555951248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:15 Heat of formation + Delta-G solvation = -52.161020 kcal Electronic energy + Delta-G solvation = -23603.723096 eV Core-core repulsion = 20492.364499 eV Total energy + Delta-G solvation = -3111.358597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.62390 -38.98447 -37.98668 -35.78215 -35.30208 -33.00775 -31.76065 -28.72585 -28.07324 -27.98446 -25.42862 -24.09595 -23.28778 -23.07516 -21.33507 -20.94386 -19.39872 -18.41846 -17.59265 -17.09728 -16.68966 -16.49175 -15.73077 -15.48765 -15.20945 -14.89699 -14.64901 -14.54347 -14.37476 -14.12394 -13.82196 -13.33795 -13.15818 -13.12308 -13.04025 -12.82485 -12.66154 -12.45144 -12.38959 -12.28563 -12.15590 -11.98233 -11.88051 -11.57211 -11.47917 -11.09234 -11.02294 -10.92887 -10.78650 -10.53029 -10.37542 -9.54111 -8.07779 -6.20706 1.39729 1.43288 1.52982 1.59744 2.07738 2.44055 2.79243 3.18854 3.48864 3.67387 3.90945 3.91445 4.11187 4.13097 4.25004 4.25676 4.32692 4.41599 4.49821 4.54220 4.71959 4.74343 4.78787 4.80270 4.81721 4.85046 4.91842 4.96608 5.01662 5.03070 5.06990 5.16220 5.16994 5.25179 5.27555 5.36118 5.43522 5.47827 5.51201 5.56256 5.66105 5.98634 6.13730 6.39354 6.53912 6.88208 7.20211 7.46909 8.95901 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.005329 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.681819 B = 5252.882587 C = 5714.777910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.070 4.070 5 C -0.166 4.166 6 C 0.546 3.454 7 O -0.590 6.590 8 N -0.599 5.599 9 C 0.116 3.884 10 C -0.112 4.112 11 C 0.046 3.954 12 C -0.533 4.533 13 H 0.045 0.955 14 C 0.020 3.980 15 N -0.910 5.910 16 Si 0.947 3.053 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.279 1.279 20 C -0.110 4.110 21 C 0.115 3.885 22 C -0.134 4.134 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 14.168 5.626 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.196 4.196 4 C -0.108 4.108 5 C -0.169 4.169 6 C 0.336 3.664 7 O -0.471 6.471 8 N -0.330 5.330 9 C -0.007 4.007 10 C -0.150 4.150 11 C 0.027 3.973 12 C -0.571 4.571 13 H 0.063 0.937 14 C -0.179 4.179 15 N -0.550 5.550 16 Si 0.773 3.227 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.148 4.148 21 C -0.007 4.007 22 C -0.171 4.171 23 C -0.186 4.186 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.103 0.897 44 H 0.145 0.855 45 H 0.148 0.852 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.630 14.337 5.323 15.518 hybrid contribution -0.733 -1.217 -0.813 1.636 sum 1.898 13.120 4.511 14.003 Atomic orbital electron populations 1.21800 0.94310 1.01366 1.02545 1.21016 0.96167 0.97178 0.96974 1.21842 1.00962 0.94565 1.02264 1.21276 0.89046 1.01266 0.99165 1.21355 0.96276 1.04218 0.95057 1.20147 0.78215 0.81380 0.86686 1.90594 1.43298 1.70254 1.42952 1.48202 1.58013 1.07291 1.19454 1.21579 0.96819 0.94569 0.87733 1.21840 0.96162 0.97855 0.99135 1.18605 0.94263 0.92324 0.92069 1.21530 1.15408 1.24203 0.95959 0.93692 1.25590 0.99504 0.97566 0.95211 1.69949 1.41594 1.38171 1.05276 0.85683 0.79880 0.78628 0.78503 1.19861 1.20665 1.20463 1.21745 0.95630 0.96805 1.00653 1.21951 0.94645 0.95730 0.88344 1.23086 1.00684 0.92316 1.01044 1.23268 1.01556 1.00386 0.93386 0.90713 0.92589 0.94006 0.95240 0.90678 0.93038 0.93145 0.91927 0.88045 0.91366 0.90577 0.91921 0.94185 0.97967 0.92886 0.95320 0.90188 0.92088 0.88029 0.89662 0.85503 0.85175 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.19 71.98 0.66 -2.62 16 2 C -0.09 -2.43 2.82 -10.79 -0.03 -2.46 16 3 C -0.14 -2.98 8.22 71.98 0.59 -2.39 16 4 C -0.07 -1.67 4.25 30.59 0.13 -1.54 16 5 C -0.17 -4.28 0.46 -52.92 -0.02 -4.31 16 6 C 0.55 19.07 6.05 87.66 0.53 19.60 16 7 O -0.59 -24.23 16.19 -3.02 -0.05 -24.28 16 8 N -0.60 -21.65 2.97 -818.91 -2.43 -24.09 16 9 C 0.12 4.36 6.42 86.36 0.55 4.91 16 10 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 11 C 0.05 2.22 2.06 -11.51 -0.02 2.20 16 12 C -0.53 -28.78 8.56 25.60 0.22 -28.56 16 13 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 14 C 0.02 1.09 5.30 84.65 0.45 1.54 16 15 N -0.91 -49.82 11.31 21.45 0.24 -49.58 16 16 Si 0.95 42.69 29.54 68.60 2.03 44.71 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 C -0.11 -4.82 5.13 30.67 0.16 -4.66 16 21 C 0.12 4.06 5.72 86.36 0.49 4.55 16 22 C -0.13 -2.78 7.87 30.62 0.24 -2.54 16 23 C -0.15 -2.96 9.26 30.62 0.28 -2.67 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 26 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.03 0.98 7.42 -2.39 -0.02 0.96 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.05 1.23 6.28 -2.39 -0.01 1.22 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.72 6.18 -2.38 -0.01 1.71 16 32 H 0.10 1.79 8.11 -2.39 -0.02 1.77 16 33 H 0.07 2.43 8.14 -2.38 -0.02 2.42 16 34 H 0.08 2.89 7.04 -2.39 -0.02 2.87 16 35 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.26 13.62 8.31 -92.70 -0.77 12.85 16 39 H 0.03 1.28 8.07 -2.39 -0.02 1.26 16 40 H 0.08 3.93 6.03 -2.39 -0.01 3.91 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.10 3.03 4.41 -2.39 -0.01 3.02 16 43 H 0.08 2.04 8.03 -2.39 -0.02 2.02 16 44 H 0.13 1.96 7.70 -2.39 -0.02 1.94 16 45 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -62.17 350.96 5.11 -57.06 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.93 Total: 19.68 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 4.40 Total: -23.50 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.19 Total: -73.67 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -62.17 5.11 -57.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555951248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.896 kcal (2) G-P(sol) polarization free energy of solvation -62.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds