Wall clock time and date at job start Tue Mar 31 2020 02:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50696 * 120.00211 * 2 1 4 4 N 1.46909 * 109.47007 * 124.31059 * 3 2 1 5 5 C 1.46901 * 110.99741 * 199.60832 * 4 3 2 6 6 C 1.50697 * 109.47100 * 66.04853 * 5 4 3 7 7 H 1.08003 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00112 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99995 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00272 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47179 * 90.00410 * 10 8 6 12 12 H 1.48503 * 109.47304 * 210.00217 * 10 8 6 13 13 H 1.48502 * 109.46895 * 330.00327 * 10 8 6 14 14 C 1.46896 * 110.99586 * 75.65710 * 4 3 2 15 15 C 1.53011 * 109.47025 * 196.02884 * 14 4 3 16 16 H 1.09003 * 110.52935 * 299.32270 * 15 14 4 17 17 C 1.55039 * 110.60045 * 176.32434 * 15 14 4 18 18 C 1.54950 * 102.10358 * 204.78262 * 17 15 14 19 19 C 1.53582 * 103.94650 * 20.86525 * 18 17 15 20 20 C 1.53737 * 110.19142 * 122.50193 * 19 18 17 21 21 C 1.55011 * 104.06802 * 96.84330 * 20 19 18 22 22 C 1.54927 * 102.81477 * 37.49564 * 21 20 19 23 23 C 1.53347 * 110.38905 * 240.65048 * 19 18 17 24 24 O 1.43123 * 107.94691 * 1.76437 * 19 18 17 25 25 H 1.08003 * 120.00701 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00002 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.00002 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47061 * 4.31511 * 3 2 1 29 29 H 1.09003 * 109.47671 * 244.31090 * 3 2 1 30 30 H 1.09002 * 109.46497 * 186.04305 * 5 4 3 31 31 H 1.08997 * 109.47304 * 306.04358 * 5 4 3 32 32 H 0.97002 * 119.99902 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.47337 * 316.02230 * 14 4 3 34 34 H 1.08997 * 109.47556 * 76.02762 * 14 4 3 35 35 H 1.09001 * 110.90322 * 322.98324 * 17 15 14 36 36 H 1.08995 * 110.90265 * 86.58153 * 17 15 14 37 37 H 1.08994 * 110.53428 * 262.24868 * 18 17 15 38 38 H 1.09002 * 110.53310 * 139.47952 * 18 17 15 39 39 H 1.08996 * 110.51190 * 215.49292 * 20 19 18 40 40 H 1.09003 * 110.50583 * 338.19758 * 20 19 18 41 41 H 1.09004 * 110.74707 * 279.16084 * 21 20 19 42 42 H 1.09006 * 110.73898 * 155.82281 * 21 20 19 43 43 H 1.09003 * 110.48557 * 203.67349 * 22 21 20 44 44 H 1.09003 * 110.49050 * 81.03343 * 22 21 20 45 45 H 1.09005 * 110.06996 * 359.09527 * 23 19 18 46 46 H 1.09000 * 110.07474 * 120.62980 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9844 1.3387 1.1441 5 6 3.3841 2.7171 1.4577 6 6 2.1842 3.4904 1.9406 7 1 1.2209 3.0065 2.0073 8 6 2.3160 4.8157 2.2971 9 7 3.4889 5.4051 2.2154 10 14 0.8285 5.7746 2.8949 11 1 0.7171 5.6464 4.3702 12 1 0.9843 7.2064 2.5329 13 1 -0.3984 5.2333 2.2569 14 6 4.1599 0.4927 0.8985 15 6 4.8835 0.2288 2.2207 16 1 5.2206 1.1652 2.6654 17 6 6.0767 -0.7377 2.0061 18 6 6.2421 -1.3668 3.4124 19 6 4.8796 -1.1376 4.0831 20 6 4.2728 -2.4796 4.5241 21 6 4.6551 -2.5918 6.0221 22 6 4.5217 -1.1312 6.5212 23 6 5.0421 -0.2791 5.3433 24 8 4.0253 -0.4888 3.1356 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3577 2.1321 0.0773 29 1 2.6310 1.3970 -0.9261 30 1 4.1466 2.7059 2.2366 31 1 3.7860 3.1915 0.5625 32 1 3.5815 6.3377 2.4659 33 1 3.8414 -0.4546 0.4635 34 1 4.8353 1.0000 0.2097 35 1 5.8320 -1.4992 1.2656 36 1 6.9736 -0.1900 1.7170 37 1 7.0315 -0.8601 3.9675 38 1 6.4540 -2.4330 3.3318 39 1 3.1893 -2.4659 4.4064 40 1 4.7092 -3.3011 3.9559 41 1 5.6800 -2.9458 6.1335 42 1 3.9603 -3.2452 6.5499 43 1 5.1366 -0.9732 7.4072 44 1 3.4789 -0.8939 6.7321 45 1 6.0930 -0.0330 5.4953 46 1 4.4530 0.6335 5.2528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559264064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:46 Heat of formation + Delta-G solvation = -34.029200 kcal Electronic energy + Delta-G solvation = -23023.514224 eV Core-core repulsion = 19912.941882 eV Total energy + Delta-G solvation = -3110.572342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03836 -37.22436 -35.72771 -33.10278 -32.30944 -31.72827 -29.57948 -28.67596 -27.16875 -26.10429 -24.04901 -22.70843 -21.46138 -20.54203 -19.91937 -19.36998 -18.90882 -16.68101 -16.06258 -15.76306 -15.19626 -14.90198 -14.64890 -14.20836 -14.12382 -13.58084 -13.41236 -13.22124 -12.78234 -12.53791 -12.23644 -12.01813 -11.72602 -11.62301 -11.41911 -11.20499 -11.13663 -11.02611 -10.99336 -10.76497 -10.63734 -10.62444 -10.30427 -10.29513 -10.21250 -10.11324 -9.79246 -9.16503 -9.02175 -8.79191 -8.38429 -7.11784 -5.98767 -3.98636 2.85101 3.35313 3.40967 3.45112 4.14790 4.47254 4.61415 4.63038 4.87553 4.99849 5.02099 5.13751 5.24712 5.36621 5.44151 5.55227 5.59637 5.65033 5.70290 5.74620 5.81027 5.82237 5.88058 5.92415 5.93036 5.96832 6.02651 6.10394 6.20212 6.20802 6.26958 6.31012 6.37613 6.40739 6.54322 6.55452 6.63904 7.14745 7.30243 7.36227 7.40390 7.57387 7.87557 8.15004 8.27539 8.61695 9.09381 9.65088 11.12240 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.005503 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.630942 B = 5086.502049 C = 5854.623305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C 0.083 3.917 4 N -0.522 5.522 5 C 0.192 3.808 6 C -0.501 4.501 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.062 3.938 15 C 0.088 3.912 16 H 0.073 0.927 17 C -0.153 4.153 18 C -0.141 4.141 19 C 0.097 3.903 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.121 4.121 23 C -0.140 4.140 24 O -0.334 6.334 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.032 0.968 31 H -0.012 1.012 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 -15.210 2.055 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.143 4.143 3 C -0.045 4.045 4 N -0.246 5.246 5 C 0.067 3.933 6 C -0.540 4.540 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.067 4.067 15 C 0.030 3.970 16 H 0.091 0.909 17 C -0.191 4.191 18 C -0.179 4.179 19 C 0.056 3.944 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.178 4.178 24 O -0.252 6.252 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.424 -15.204 2.484 16.028 hybrid contribution 0.032 0.992 -0.272 1.029 sum 4.456 -14.212 2.212 15.058 Atomic orbital electron populations 1.23656 0.95980 1.01043 1.03565 1.22950 0.95811 0.98424 0.97128 1.21182 0.96237 0.95574 0.91469 1.62060 1.13091 1.13373 1.36030 1.19779 0.96777 0.81581 0.95142 1.21166 0.95428 0.94629 1.42775 0.91835 1.24968 0.95957 0.97699 0.95972 1.69960 1.22883 1.12097 1.49121 0.86533 0.83056 0.78883 0.79160 1.20673 1.21405 1.19852 1.22075 0.92929 0.97831 0.93857 1.23172 0.88494 0.94559 0.90812 0.90914 1.23216 0.99381 0.99349 0.97150 1.23071 0.97308 1.01351 0.96142 1.22277 0.89697 0.92325 0.90077 1.22431 1.01987 0.95225 0.95534 1.22480 1.00970 0.96997 0.95605 1.22332 1.01419 0.94662 0.97494 1.22684 1.01278 0.99719 0.94130 1.89042 1.28971 1.65662 1.41543 0.89425 0.88718 0.88511 0.89082 0.95625 0.94999 0.99410 0.93043 0.91612 0.94653 0.90878 0.90652 0.90903 0.90913 0.90432 0.91538 0.91739 0.91623 0.92000 0.91403 0.91736 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.29 14.32 29.02 0.42 -2.88 16 2 C -0.12 -2.17 9.33 -36.03 -0.34 -2.51 16 3 C 0.08 1.68 5.25 -4.97 -0.03 1.65 16 4 N -0.52 -11.56 4.31 -237.51 -1.02 -12.58 16 5 C 0.19 5.04 4.57 -4.98 -0.02 5.02 16 6 C -0.50 -14.27 8.23 -34.44 -0.28 -14.55 16 7 H 0.06 1.82 7.31 -52.48 -0.38 1.44 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 10 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.06 1.14 4.55 -3.82 -0.02 1.13 16 15 C 0.09 1.54 3.29 -25.65 -0.08 1.45 16 16 H 0.07 1.45 6.70 -51.93 -0.35 1.10 16 17 C -0.15 -2.04 6.60 -24.62 -0.16 -2.20 16 18 C -0.14 -1.73 6.29 -25.40 -0.16 -1.89 16 19 C 0.10 1.40 1.06 -89.76 -0.10 1.30 16 20 C -0.11 -1.43 6.09 -25.29 -0.15 -1.58 16 21 C -0.12 -1.31 6.91 -24.65 -0.17 -1.48 16 22 C -0.12 -1.46 6.84 -24.97 -0.17 -1.63 16 23 C -0.14 -2.01 6.28 -25.81 -0.16 -2.17 16 24 O -0.33 -6.20 10.42 -35.23 -0.37 -6.57 16 25 H 0.09 1.21 8.06 -52.48 -0.42 0.79 16 26 H 0.09 1.55 7.84 -52.48 -0.41 1.14 16 27 H 0.10 1.57 7.27 -52.48 -0.38 1.19 16 28 H 0.09 2.03 6.22 -51.93 -0.32 1.70 16 29 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 30 H 0.03 0.89 6.45 -51.93 -0.34 0.56 16 31 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.07 1.11 6.84 -51.93 -0.36 0.76 16 34 H 0.04 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.83 7.11 -51.93 -0.37 0.47 16 38 H 0.07 0.77 7.26 -51.93 -0.38 0.39 16 39 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 40 H 0.07 0.73 7.35 -51.93 -0.38 0.35 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.84 7.09 -51.93 -0.37 0.47 16 46 H 0.08 1.40 7.97 -51.93 -0.41 0.99 16 LS Contribution 356.75 15.07 5.38 5.38 Total: -1.00 -30.41 356.75 -10.04 -40.45 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.21 Total: 1.34 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.53 Total: -18.87 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.29 Total: -38.73 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.37 Total: -6.57 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.41 -10.04 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559264064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.423 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds