Wall clock time and date at job start Tue Mar 31 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00478 * 2 1 4 4 N 1.46905 * 109.47073 * 123.82112 * 3 2 1 5 5 C 1.46899 * 111.00121 * 295.24424 * 4 3 2 6 6 C 1.50703 * 109.46782 * 296.20203 * 5 4 3 7 7 H 1.07993 * 120.00153 * 354.87176 * 6 5 4 8 8 C 1.37879 * 119.99631 * 174.87354 * 6 5 4 9 9 N 1.31514 * 120.00168 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00016 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47063 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.46941 * 299.99968 * 10 8 6 13 13 H 1.48508 * 109.46913 * 59.99796 * 10 8 6 14 14 C 1.46901 * 110.99677 * 59.19989 * 4 3 2 15 15 C 1.52991 * 109.47471 * 71.90112 * 14 4 3 16 16 H 1.09005 * 110.27186 * 54.97844 * 15 14 4 17 17 C 1.54988 * 110.30898 * 177.06069 * 15 14 4 18 18 C 1.55524 * 100.95063 * 155.00942 * 17 15 14 19 19 C 1.53908 * 102.14279 * 326.38580 * 18 17 15 20 20 C 1.53781 * 109.93477 * 141.92395 * 19 18 17 21 21 C 1.55007 * 104.07697 * 96.36127 * 20 19 18 22 22 C 1.54933 * 102.81048 * 37.51856 * 21 20 19 23 23 C 1.53388 * 110.13284 * 259.71150 * 19 18 17 24 24 O 1.42672 * 108.16646 * 21.01024 * 19 18 17 25 25 H 1.07999 * 119.99751 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00073 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99751 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.46623 * 3.82630 * 3 2 1 29 29 H 1.08997 * 109.47602 * 243.82412 * 3 2 1 30 30 H 1.08997 * 109.47166 * 176.20535 * 5 4 3 31 31 H 1.08994 * 109.47272 * 56.20569 * 5 4 3 32 32 H 0.97003 * 120.00488 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46921 * 191.90180 * 14 4 3 34 34 H 1.09004 * 109.47245 * 311.89940 * 14 4 3 35 35 H 1.09007 * 111.11490 * 273.01421 * 17 15 14 36 36 H 1.09002 * 111.11740 * 37.14577 * 17 15 14 37 37 H 1.09002 * 110.94111 * 208.14356 * 18 17 15 38 38 H 1.08996 * 110.85441 * 84.58864 * 18 17 15 39 39 H 1.08999 * 110.51193 * 215.00247 * 20 19 18 40 40 H 1.08996 * 110.50974 * 337.71424 * 20 19 18 41 41 H 1.09005 * 110.74653 * 279.19219 * 21 20 19 42 42 H 1.08996 * 110.90603 * 155.92226 * 21 20 19 43 43 H 1.09011 * 110.48389 * 203.64897 * 22 21 20 44 44 H 1.09004 * 110.48551 * 81.01355 * 22 21 20 45 45 H 1.09001 * 110.07321 * 359.57361 * 23 19 18 46 46 H 1.09004 * 110.06693 * 121.10048 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9761 1.3436 1.1507 5 6 2.2289 1.3409 2.4154 6 6 1.4007 2.5963 2.5121 7 1 1.4892 3.3612 1.7550 8 6 0.5301 2.7682 3.5674 9 7 0.4221 1.8364 4.4892 10 14 -0.4959 4.3245 3.6878 11 1 -1.3450 4.2647 4.9046 12 1 0.4022 5.5045 3.7678 13 1 -1.3609 4.4413 2.4863 14 6 3.9323 0.2294 1.1017 15 6 4.9492 0.4787 -0.0138 16 1 5.4290 1.4480 0.1222 17 6 6.0119 -0.6493 -0.0348 18 6 6.4777 -0.5888 -1.5174 19 6 5.1830 -0.1891 -2.2474 20 6 5.5055 0.7896 -3.3889 21 6 5.5962 -0.1135 -4.6455 22 6 4.4752 -1.1548 -4.4017 23 6 4.5321 -1.4243 -2.8825 24 8 4.3061 0.4161 -1.2986 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3572 2.1324 0.0686 29 1 2.6379 1.3931 -0.9222 30 1 2.9282 1.3018 3.2505 31 1 1.5741 0.4702 2.4488 32 1 -0.1907 1.9571 5.2315 33 1 4.4519 0.1544 2.0570 34 1 3.3976 -0.6999 0.9050 35 1 6.8338 -0.4272 0.6459 36 1 5.5636 -1.6156 0.1961 37 1 6.8297 -1.5635 -1.8553 38 1 7.2494 0.1692 -1.6511 39 1 4.7058 1.5216 -3.5018 40 1 6.4578 1.2878 -3.2072 41 1 6.5699 -0.6004 -4.7016 42 1 5.4002 0.4599 -5.5515 43 1 4.6766 -2.0697 -4.9592 44 1 3.5050 -0.7432 -4.6801 45 1 5.1353 -2.3098 -2.6821 46 1 3.5248 -1.5603 -2.4889 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559264068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:49 Heat of formation + Delta-G solvation = -48.944137 kcal Electronic energy + Delta-G solvation = -23180.039001 eV Core-core repulsion = 20068.819898 eV Total energy + Delta-G solvation = -3111.219103 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25936 -38.96474 -36.96098 -34.80852 -33.80358 -32.95224 -31.01476 -29.66819 -28.84966 -27.48070 -25.90691 -23.89803 -22.48542 -22.26448 -21.59884 -20.50722 -20.15700 -18.33970 -17.54056 -17.07674 -16.75335 -16.27294 -16.07366 -15.81903 -15.57934 -15.05738 -14.69675 -14.32292 -14.11802 -13.94859 -13.62167 -13.52240 -13.08087 -12.96280 -12.85134 -12.66134 -12.58494 -12.41870 -12.25859 -12.09005 -11.97637 -11.94825 -11.93523 -11.71170 -11.61126 -11.27669 -11.22489 -11.04464 -10.58018 -10.26107 -10.12553 -8.89830 -8.16869 -6.25539 1.40079 1.42934 1.48613 1.50777 2.41580 2.89282 3.15947 3.36576 3.56739 3.66436 3.94063 3.97927 4.09677 4.11983 4.16763 4.27840 4.38431 4.47519 4.53281 4.59542 4.69497 4.70341 4.78036 4.82725 4.86907 4.92922 4.98518 5.00760 5.07740 5.08324 5.12785 5.22140 5.24786 5.25740 5.30682 5.37519 5.42414 5.48338 5.50286 5.67745 5.76279 5.94453 6.11067 6.38968 6.46463 6.71881 6.90942 7.43323 8.93901 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026634 B = 0.004286 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.035123 B = 6531.665506 C = 6812.331349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.172 4.172 3 C 0.097 3.903 4 N -0.535 5.535 5 C 0.208 3.792 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.282 1.282 12 H -0.269 1.269 13 H -0.270 1.270 14 C 0.053 3.947 15 C 0.093 3.907 16 H 0.064 0.936 17 C -0.145 4.145 18 C -0.132 4.132 19 C 0.089 3.911 20 C -0.129 4.129 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.127 4.127 24 O -0.374 6.374 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.051 0.949 29 H 0.098 0.902 30 H -0.003 1.003 31 H -0.027 1.027 32 H 0.263 0.737 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.525 -7.625 -16.888 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.192 4.192 3 C -0.030 4.030 4 N -0.257 5.257 5 C 0.082 3.918 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.208 1.208 12 H -0.194 1.194 13 H -0.195 1.195 14 C -0.076 4.076 15 C 0.035 3.965 16 H 0.082 0.918 17 C -0.183 4.183 18 C -0.169 4.169 19 C 0.049 3.951 20 C -0.167 4.167 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.165 4.165 24 O -0.294 6.294 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.015 0.985 31 H -0.010 1.010 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.516 -7.136 -16.778 22.115 hybrid contribution -1.261 -0.087 0.873 1.536 sum 11.254 -7.223 -15.906 20.780 Atomic orbital electron populations 1.23794 0.96149 1.01419 1.01533 1.23499 0.96534 0.99826 0.99319 1.21247 0.94186 0.93412 0.94191 1.62295 1.17883 1.42403 1.03104 1.19354 0.91033 0.95139 0.86264 1.21361 1.21982 1.03792 1.08420 0.92526 1.25804 0.98242 0.99852 0.95279 1.70075 1.38539 1.35595 1.13157 0.85554 0.78574 0.79666 0.77549 1.20769 1.19387 1.19488 1.22314 0.94403 0.92746 0.98114 1.22953 0.91964 0.98535 0.83041 0.91776 1.23290 0.98441 0.98496 0.98030 1.23240 0.96456 1.03648 0.93571 1.22594 0.89766 0.92770 0.89927 1.22684 1.01524 0.97754 0.94737 1.22447 0.99268 0.96672 0.96891 1.22351 0.98931 0.99732 0.94897 1.22445 1.00903 0.96991 0.96141 1.88496 1.40798 1.81313 1.18842 0.89724 0.87795 0.87957 0.93004 0.88464 0.98520 1.00960 0.92841 0.90973 0.94942 0.88609 0.90513 0.88350 0.89677 0.92544 0.90580 0.89963 0.90824 0.90147 0.92626 0.89958 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.43 14.32 67.78 0.97 -6.46 16 2 C -0.17 -6.91 7.66 25.65 0.20 -6.71 16 3 C 0.10 4.15 5.22 85.56 0.45 4.59 16 4 N -0.53 -24.30 4.68 -905.37 -4.23 -28.53 16 5 C 0.21 11.45 4.54 85.56 0.39 11.84 16 6 C -0.52 -30.20 8.31 25.60 0.21 -29.98 16 7 H 0.06 3.29 7.18 -2.91 -0.02 3.27 16 8 C 0.01 0.36 5.46 84.66 0.46 0.82 16 9 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 10 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 14 C 0.05 1.95 4.68 86.30 0.40 2.35 16 15 C 0.09 2.76 3.63 31.27 0.11 2.87 16 16 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 17 C -0.14 -3.08 6.59 32.14 0.21 -2.86 16 18 C -0.13 -2.32 6.08 31.77 0.19 -2.13 16 19 C 0.09 1.97 1.17 -10.09 -0.01 1.96 16 20 C -0.13 -2.59 6.12 31.54 0.19 -2.40 16 21 C -0.12 -1.75 6.91 31.94 0.22 -1.53 16 22 C -0.12 -2.06 6.84 31.73 0.22 -1.84 16 23 C -0.13 -2.58 6.28 31.20 0.20 -2.39 16 24 O -0.37 -11.33 7.36 -148.98 -1.10 -12.43 16 25 H 0.08 3.46 7.84 -2.91 -0.02 3.43 16 26 H 0.10 3.52 8.06 -2.91 -0.02 3.49 16 27 H 0.10 3.89 6.56 -2.91 -0.02 3.87 16 28 H 0.05 2.46 6.33 -2.38 -0.02 2.44 16 29 H 0.10 3.92 5.43 -2.39 -0.01 3.91 16 30 H 0.00 -0.19 7.91 -2.39 -0.02 -0.21 16 31 H -0.03 -1.63 7.12 -2.39 -0.02 -1.65 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.07 2.66 7.84 -2.39 -0.02 2.64 16 34 H 0.03 1.21 5.91 -2.39 -0.01 1.20 16 35 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 37 H 0.10 1.34 7.30 -2.39 -0.02 1.33 16 38 H 0.08 1.34 7.39 -2.39 -0.02 1.32 16 39 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 40 H 0.08 1.36 7.37 -2.39 -0.02 1.34 16 41 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.08 1.38 7.20 -2.39 -0.02 1.36 16 46 H 0.05 1.31 7.98 -2.39 -0.02 1.29 16 Total: -1.00 -65.85 350.73 2.32 -63.53 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.92 Total: 18.73 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 4.41 Total: -31.88 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -3.95 Total: -85.46 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.10 Total: -12.43 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -65.85 2.32 -63.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559264068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.584 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds