Wall clock time and date at job start Tue Mar 31 2020 01:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99785 * 2 1 4 4 C 1.52995 * 109.47160 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.47398 * 239.99687 * 3 2 1 6 6 C 1.52997 * 109.46900 * 305.89720 * 5 3 2 7 7 C 1.50707 * 109.47187 * 119.99793 * 3 2 1 8 8 O 1.21280 * 119.99538 * 1.73948 * 7 3 2 9 9 N 1.34771 * 119.99777 * 181.73509 * 7 3 2 10 10 C 1.46924 * 120.63465 * 354.16046 * 9 7 3 11 11 C 1.53616 * 108.54457 * 126.37006 * 10 9 7 12 12 C 1.53041 * 109.24329 * 54.85647 * 11 10 9 13 13 C 1.53000 * 109.45991 * 178.49291 * 12 11 10 14 14 C 1.50699 * 109.47038 * 295.06582 * 13 12 11 15 15 H 1.08000 * 120.00552 * 0.02562 * 14 13 12 16 16 C 1.37889 * 120.00050 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99535 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 119.99733 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46957 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.47086 * 209.99714 * 18 16 14 21 21 H 1.48496 * 109.47437 * 330.00091 * 18 16 14 22 22 C 1.53038 * 109.53820 * 298.50775 * 12 11 10 23 23 C 1.46928 * 120.62822 * 174.44024 * 9 7 3 24 24 H 1.08003 * 120.00617 * 0.02562 * 1 2 3 25 25 H 1.08008 * 120.00171 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00321 * 180.27432 * 2 1 3 27 27 H 1.09000 * 109.47232 * 64.23310 * 4 3 2 28 28 H 1.09001 * 109.47327 * 184.23379 * 4 3 2 29 29 H 1.09003 * 109.47247 * 304.23195 * 4 3 2 30 30 H 1.09002 * 109.46544 * 65.89018 * 5 3 2 31 31 H 1.08998 * 109.47027 * 185.89101 * 5 3 2 32 32 H 1.09000 * 109.47271 * 59.99893 * 6 5 3 33 33 H 1.09000 * 109.47158 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47269 * 299.99478 * 6 5 3 35 35 H 1.09002 * 109.58329 * 246.20412 * 10 9 7 36 36 H 1.08995 * 109.58511 * 6.62372 * 10 9 7 37 37 H 1.08998 * 109.63427 * 294.86244 * 11 10 9 38 38 H 1.09003 * 109.46094 * 174.73907 * 11 10 9 39 39 H 1.08993 * 109.44668 * 58.52562 * 12 11 10 40 40 H 1.08997 * 109.47746 * 55.06539 * 13 12 11 41 41 H 1.09004 * 109.47287 * 175.07063 * 13 12 11 42 42 H 0.97009 * 119.99770 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.50139 * 301.41536 * 22 12 11 44 44 H 1.08999 * 109.52597 * 181.33333 * 22 12 11 45 45 H 1.09005 * 109.58724 * 353.36902 * 23 9 7 46 46 H 1.09003 * 109.58786 * 113.65095 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4680 -0.0006 5 6 2.9431 1.3863 -1.2492 6 6 3.8361 0.1463 -1.3254 7 6 2.9298 1.3850 1.2305 8 8 2.9589 0.4587 2.0128 9 7 3.6722 2.4859 1.4616 10 6 3.7474 3.5612 0.4633 11 6 3.3717 4.8864 1.1435 12 6 4.2696 5.0989 2.3645 13 6 3.9249 6.4357 3.0241 14 6 4.2591 7.5623 2.0807 15 1 4.6753 7.3465 1.1077 16 6 4.0336 8.8688 2.4596 17 7 4.3248 9.8518 1.6360 18 14 3.3131 9.2421 4.1420 19 1 4.4131 9.4079 5.1258 20 1 2.5177 10.4943 4.0732 21 1 2.4358 8.1210 4.5647 22 6 4.0477 3.9638 3.3667 23 6 4.4266 2.6306 2.7140 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5401 -0.9354 -0.0004 26 1 1.8500 -0.9353 -0.0045 27 1 0.4931 2.4541 0.9246 28 1 1.6120 3.4102 -0.0765 29 1 0.3939 2.3683 -0.8505 30 1 2.3111 1.4339 -2.1361 31 1 3.5654 2.2797 -1.1980 32 1 3.2138 -0.7471 -1.3767 33 1 4.4625 0.2038 -2.2156 34 1 4.4680 0.0985 -0.4386 35 1 4.7619 3.6241 0.0697 36 1 3.0503 3.3552 -0.3489 37 1 2.3292 4.8530 1.4598 38 1 3.5126 5.7079 0.4410 39 1 5.3132 5.1073 2.0504 40 1 2.8607 6.4617 3.2584 41 1 4.5019 6.5474 3.9421 42 1 4.1665 10.7710 1.9027 43 1 2.9988 3.9391 3.6621 44 1 4.6697 4.1279 4.2466 45 1 4.1777 1.8104 3.3875 46 1 5.4954 2.6166 2.5005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565424305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:45 Heat of formation + Delta-G solvation = -18.798222 kcal Electronic energy + Delta-G solvation = -23266.146816 eV Core-core repulsion = 20156.234938 eV Total energy + Delta-G solvation = -3109.911878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87639 -37.75240 -36.65082 -34.12777 -32.44659 -31.95048 -31.02257 -29.35845 -28.56785 -25.50245 -24.34604 -23.29089 -22.55830 -21.60370 -20.26566 -19.23006 -18.15700 -16.78392 -16.44666 -16.32812 -15.51223 -14.96503 -14.73921 -14.31764 -14.03987 -13.84770 -13.76146 -13.36569 -13.08129 -12.78546 -12.70160 -12.46495 -12.33793 -12.14365 -11.98820 -11.53946 -11.39673 -11.31013 -11.18399 -11.00291 -10.83103 -10.68870 -10.54501 -10.28061 -9.91382 -9.74319 -9.61747 -9.49394 -9.25544 -9.08027 -8.56000 -8.38578 -6.07193 -4.04561 2.16020 2.74680 3.20760 3.28495 3.36614 3.40158 4.38610 4.43020 4.51892 4.72323 4.85380 5.02739 5.10029 5.19782 5.25898 5.29132 5.36271 5.37465 5.43559 5.47824 5.56068 5.60775 5.61665 5.74365 5.80973 5.82822 5.91277 5.91916 5.97382 6.08991 6.16870 6.27382 6.28675 6.42069 6.51408 6.61882 6.67155 6.78064 6.83610 6.94148 7.22665 7.41469 7.57550 7.77256 8.29439 8.50549 8.97204 9.56202 11.05977 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.004239 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.234669 B = 6603.849716 C = 6726.995308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.052 4.052 4 C -0.161 4.161 5 C -0.127 4.127 6 C -0.154 4.154 7 C 0.530 3.470 8 O -0.548 6.548 9 N -0.602 5.602 10 C 0.079 3.921 11 C -0.122 4.122 12 C -0.071 4.071 13 C -0.009 4.009 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.132 4.132 23 C 0.113 3.887 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 -17.283 -5.375 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.136 4.136 3 C -0.055 4.055 4 C -0.218 4.218 5 C -0.164 4.164 6 C -0.211 4.211 7 C 0.318 3.682 8 O -0.426 6.426 9 N -0.335 5.335 10 C -0.043 4.043 11 C -0.160 4.160 12 C -0.090 4.090 13 C -0.047 4.047 14 C -0.554 4.554 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.170 4.170 23 C -0.010 4.010 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.273 -17.572 -4.967 18.754 hybrid contribution -0.319 0.468 0.959 1.114 sum -4.592 -17.104 -4.008 18.157 Atomic orbital electron populations 1.23961 0.95926 1.02134 1.01564 1.22502 0.95454 0.96709 0.98938 1.19901 0.95558 0.95806 0.94228 1.22313 0.99016 0.97499 1.02964 1.21994 0.98210 1.00222 0.96019 1.21825 0.99591 0.97879 1.01825 1.20332 0.79400 0.81686 0.86806 1.90646 1.66187 1.37155 1.48641 1.48081 1.47410 1.18820 1.19168 1.22703 1.02369 0.87641 0.91569 1.22025 0.99776 0.95323 0.98831 1.20992 0.99096 0.94820 0.94105 1.19619 0.96284 0.92604 0.96169 1.21130 1.42157 0.89526 1.02579 0.90846 1.25018 0.95111 0.96427 0.96880 1.69911 1.48896 0.99394 1.36100 0.86824 0.79749 0.77809 0.85154 1.20383 1.21480 1.19096 1.22057 1.01732 0.94198 0.98993 1.21630 0.95157 0.98747 0.85422 0.87859 0.88450 0.86889 0.91756 0.89873 0.91076 0.90626 0.89485 0.92276 0.92407 0.92724 0.91374 0.87834 0.92202 0.89205 0.91763 0.96703 0.97073 0.92794 0.92139 0.91184 0.89800 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 13.70 29.02 0.40 -1.61 16 2 C -0.12 -1.34 7.12 -36.02 -0.26 -1.60 16 3 C -0.05 -0.60 0.51 -156.81 -0.08 -0.68 16 4 C -0.16 -1.71 6.82 37.16 0.25 -1.46 16 5 C -0.13 -1.23 4.62 -26.73 -0.12 -1.36 16 6 C -0.15 -1.50 9.35 37.16 0.35 -1.15 16 7 C 0.53 7.77 5.50 -10.98 -0.06 7.71 16 8 O -0.55 -9.79 15.47 5.56 0.09 -9.70 16 9 N -0.60 -8.51 2.96 -172.50 -0.51 -9.02 16 10 C 0.08 1.03 4.17 -3.49 -0.01 1.01 16 11 C -0.12 -1.97 4.88 -26.39 -0.13 -2.10 16 12 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 13 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 14 C -0.52 -13.85 8.94 -34.44 -0.31 -14.16 16 15 H 0.07 2.09 7.30 -52.49 -0.38 1.71 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 18 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 22 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 23 C 0.11 1.63 6.41 -3.71 -0.02 1.61 16 24 H 0.10 0.97 5.68 -52.48 -0.30 0.67 16 25 H 0.10 0.85 8.06 -52.48 -0.42 0.42 16 26 H 0.11 1.31 6.88 -52.49 -0.36 0.95 16 27 H 0.06 0.74 7.74 -51.93 -0.40 0.34 16 28 H 0.08 0.90 4.29 -51.93 -0.22 0.67 16 29 H 0.07 0.62 7.23 -51.93 -0.38 0.25 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.83 4.62 -51.93 -0.24 0.59 16 32 H 0.06 0.55 6.46 -51.93 -0.34 0.21 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.63 7.41 -51.93 -0.38 0.24 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.14 2.47 -51.93 -0.13 1.01 16 37 H 0.06 0.98 7.79 -51.93 -0.40 0.58 16 38 H 0.09 1.61 6.91 -51.93 -0.36 1.25 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 41 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.27 7.04 -51.93 -0.37 0.90 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -30.95 339.05 -7.31 -38.26 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.58 Total: 1.00 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -0.52 Total: -16.00 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.26 Total: -35.34 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.95 -7.31 -38.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565424305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.464 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds