Wall clock time and date at job start Tue Mar 31 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99785 * 2 1 4 4 C 1.52995 * 109.47160 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.47398 * 239.99687 * 3 2 1 6 6 C 1.52997 * 109.46900 * 305.89720 * 5 3 2 7 7 C 1.50707 * 109.47187 * 119.99793 * 3 2 1 8 8 O 1.21280 * 119.99538 * 1.73948 * 7 3 2 9 9 N 1.34771 * 119.99777 * 181.73509 * 7 3 2 10 10 C 1.46924 * 120.63465 * 354.16046 * 9 7 3 11 11 C 1.53616 * 108.54457 * 126.37006 * 10 9 7 12 12 C 1.53041 * 109.24329 * 54.85647 * 11 10 9 13 13 C 1.53000 * 109.45991 * 178.49291 * 12 11 10 14 14 C 1.50699 * 109.47038 * 295.06582 * 13 12 11 15 15 H 1.08000 * 120.00552 * 0.02562 * 14 13 12 16 16 C 1.37889 * 120.00050 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99535 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 119.99733 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46957 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.47086 * 209.99714 * 18 16 14 21 21 H 1.48496 * 109.47437 * 330.00091 * 18 16 14 22 22 C 1.53038 * 109.53820 * 298.50775 * 12 11 10 23 23 C 1.46928 * 120.62822 * 174.44024 * 9 7 3 24 24 H 1.08003 * 120.00617 * 0.02562 * 1 2 3 25 25 H 1.08008 * 120.00171 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00321 * 180.27432 * 2 1 3 27 27 H 1.09000 * 109.47232 * 64.23310 * 4 3 2 28 28 H 1.09001 * 109.47327 * 184.23379 * 4 3 2 29 29 H 1.09003 * 109.47247 * 304.23195 * 4 3 2 30 30 H 1.09002 * 109.46544 * 65.89018 * 5 3 2 31 31 H 1.08998 * 109.47027 * 185.89101 * 5 3 2 32 32 H 1.09000 * 109.47271 * 59.99893 * 6 5 3 33 33 H 1.09000 * 109.47158 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47269 * 299.99478 * 6 5 3 35 35 H 1.09002 * 109.58329 * 246.20412 * 10 9 7 36 36 H 1.08995 * 109.58511 * 6.62372 * 10 9 7 37 37 H 1.08998 * 109.63427 * 294.86244 * 11 10 9 38 38 H 1.09003 * 109.46094 * 174.73907 * 11 10 9 39 39 H 1.08993 * 109.44668 * 58.52562 * 12 11 10 40 40 H 1.08997 * 109.47746 * 55.06539 * 13 12 11 41 41 H 1.09004 * 109.47287 * 175.07063 * 13 12 11 42 42 H 0.97009 * 119.99770 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.50139 * 301.41536 * 22 12 11 44 44 H 1.08999 * 109.52597 * 181.33333 * 22 12 11 45 45 H 1.09005 * 109.58724 * 353.36902 * 23 9 7 46 46 H 1.09003 * 109.58786 * 113.65095 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4680 -0.0006 5 6 2.9431 1.3863 -1.2492 6 6 3.8361 0.1463 -1.3254 7 6 2.9298 1.3850 1.2305 8 8 2.9589 0.4587 2.0128 9 7 3.6722 2.4859 1.4616 10 6 3.7474 3.5612 0.4633 11 6 3.3717 4.8864 1.1435 12 6 4.2696 5.0989 2.3645 13 6 3.9249 6.4357 3.0241 14 6 4.2591 7.5623 2.0807 15 1 4.6753 7.3465 1.1077 16 6 4.0336 8.8688 2.4596 17 7 4.3248 9.8518 1.6360 18 14 3.3131 9.2421 4.1420 19 1 4.4131 9.4079 5.1258 20 1 2.5177 10.4943 4.0732 21 1 2.4358 8.1210 4.5647 22 6 4.0477 3.9638 3.3667 23 6 4.4266 2.6306 2.7140 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5401 -0.9354 -0.0004 26 1 1.8500 -0.9353 -0.0045 27 1 0.4931 2.4541 0.9246 28 1 1.6120 3.4102 -0.0765 29 1 0.3939 2.3683 -0.8505 30 1 2.3111 1.4339 -2.1361 31 1 3.5654 2.2797 -1.1980 32 1 3.2138 -0.7471 -1.3767 33 1 4.4625 0.2038 -2.2156 34 1 4.4680 0.0985 -0.4386 35 1 4.7619 3.6241 0.0697 36 1 3.0503 3.3552 -0.3489 37 1 2.3292 4.8530 1.4598 38 1 3.5126 5.7079 0.4410 39 1 5.3132 5.1073 2.0504 40 1 2.8607 6.4617 3.2584 41 1 4.5019 6.5474 3.9421 42 1 4.1665 10.7710 1.9027 43 1 2.9988 3.9391 3.6621 44 1 4.6697 4.1279 4.2466 45 1 4.1777 1.8104 3.3875 46 1 5.4954 2.6166 2.5005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565424305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:44 Heat of formation + Delta-G solvation = -36.085701 kcal Electronic energy + Delta-G solvation = -23266.896457 eV Core-core repulsion = 20156.234938 eV Total energy + Delta-G solvation = -3110.661519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95518 -38.99983 -37.70959 -35.70306 -34.11404 -33.01706 -32.15045 -30.45207 -30.07079 -26.80181 -25.47563 -24.47885 -23.71474 -22.85692 -21.63575 -20.47195 -19.20500 -18.80720 -17.52515 -17.38954 -16.53165 -16.36184 -15.96018 -15.69103 -15.17305 -15.10905 -14.94823 -14.78874 -14.31771 -14.21931 -13.91379 -13.66576 -13.46707 -13.23399 -13.13686 -12.93755 -12.78191 -12.44694 -12.33236 -12.14952 -12.06877 -11.96130 -11.82349 -11.67906 -11.43021 -11.32399 -11.06276 -10.92947 -10.71685 -10.53272 -10.22785 -9.59874 -8.24185 -6.25205 1.32129 1.35961 1.38353 1.48711 1.63251 2.12261 2.38520 3.11790 3.44630 3.66230 3.87460 3.89713 3.95264 4.02558 4.10211 4.18758 4.32584 4.37732 4.43173 4.47726 4.59956 4.64681 4.64844 4.72433 4.82467 4.87210 4.93964 4.95726 5.03218 5.07277 5.07489 5.15391 5.18269 5.23596 5.29108 5.37783 5.39731 5.42743 5.62061 5.71784 5.74561 5.75400 5.85594 6.35713 6.45317 6.82176 7.16137 7.38711 8.91891 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026403 B = 0.004239 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.234669 B = 6603.849716 C = 6726.995308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 C -0.048 4.048 4 C -0.160 4.160 5 C -0.126 4.126 6 C -0.152 4.152 7 C 0.526 3.474 8 O -0.584 6.584 9 N -0.603 5.603 10 C 0.088 3.912 11 C -0.116 4.116 12 C -0.069 4.069 13 C -0.007 4.007 14 C -0.514 4.514 15 H 0.044 0.956 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.252 1.252 22 C -0.121 4.121 23 C 0.115 3.885 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.263 0.737 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 -18.450 -5.440 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.157 4.157 3 C -0.051 4.051 4 C -0.216 4.216 5 C -0.163 4.163 6 C -0.209 4.209 7 C 0.315 3.685 8 O -0.465 6.465 9 N -0.335 5.335 10 C -0.033 4.033 11 C -0.155 4.155 12 C -0.088 4.088 13 C -0.045 4.045 14 C -0.552 4.552 15 H 0.063 0.937 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.214 1.214 21 H -0.176 1.176 22 C -0.160 4.160 23 C -0.008 4.008 24 H 0.130 0.870 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.273 -18.748 -5.037 20.116 hybrid contribution 0.007 0.806 0.935 1.234 sum -5.266 -17.942 -4.102 19.144 Atomic orbital electron populations 1.24167 0.95531 1.03214 0.99548 1.22504 0.95989 0.96374 1.00813 1.19928 0.95459 0.96381 0.93333 1.22322 0.99047 0.96799 1.03480 1.22028 0.98242 1.00107 0.95901 1.21804 0.99529 0.98141 1.01432 1.20956 0.79117 0.81002 0.87380 1.90623 1.67323 1.38385 1.50137 1.48153 1.47193 1.18979 1.19154 1.22714 1.03639 0.85496 0.91486 1.21909 0.99272 0.96492 0.97788 1.20912 0.99131 0.93503 0.95244 1.19584 0.95946 0.93468 0.95484 1.21447 1.40703 0.90867 1.02148 0.93740 1.25874 0.95912 0.96444 1.00742 1.70051 1.50944 0.99861 1.38325 0.85823 0.79307 0.77928 0.80549 1.19647 1.21359 1.17550 1.21934 1.01614 0.93754 0.98658 1.21576 0.95931 0.97608 0.85652 0.87009 0.87160 0.87617 0.92814 0.90160 0.88713 0.88445 0.89367 0.92051 0.90871 0.94960 0.90423 0.85413 0.92385 0.91299 0.92322 0.96904 0.96970 0.92780 0.92687 0.90255 0.90290 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.34 13.70 67.79 0.93 -2.41 16 2 C -0.14 -2.92 7.12 25.65 0.18 -2.74 16 3 C -0.05 -1.01 0.51 -53.67 -0.03 -1.04 16 4 C -0.16 -3.01 6.82 71.98 0.49 -2.52 16 5 C -0.13 -2.12 4.62 30.59 0.14 -1.98 16 6 C -0.15 -2.69 9.35 71.98 0.67 -2.02 16 7 C 0.53 14.83 5.50 87.66 0.48 15.31 16 8 O -0.58 -20.60 15.47 -3.03 -0.05 -20.65 16 9 N -0.60 -16.25 2.96 -818.07 -2.42 -18.67 16 10 C 0.09 2.15 4.17 86.51 0.36 2.51 16 11 C -0.12 -3.69 4.88 30.82 0.15 -3.54 16 12 C -0.07 -2.46 2.10 -10.77 -0.02 -2.48 16 13 C -0.01 -0.33 3.52 29.85 0.10 -0.23 16 14 C -0.51 -27.89 8.94 25.60 0.23 -27.66 16 15 H 0.04 2.61 7.30 -2.91 -0.02 2.59 16 16 C 0.01 0.39 5.47 84.66 0.46 0.85 16 17 N -0.95 -58.06 13.96 21.45 0.30 -57.76 16 18 Si 0.94 43.73 27.47 68.60 1.88 45.61 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 22 C -0.12 -3.65 5.36 30.67 0.16 -3.49 16 23 C 0.11 3.18 6.41 86.36 0.55 3.74 16 24 H 0.11 1.78 5.68 -2.91 -0.02 1.76 16 25 H 0.11 1.65 8.06 -2.91 -0.02 1.62 16 26 H 0.11 2.36 6.88 -2.91 -0.02 2.34 16 27 H 0.05 1.13 7.74 -2.39 -0.02 1.12 16 28 H 0.08 1.55 4.29 -2.39 -0.01 1.54 16 29 H 0.09 1.34 7.23 -2.39 -0.02 1.32 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.45 4.62 -2.39 -0.01 1.44 16 32 H 0.06 1.05 6.46 -2.39 -0.02 1.03 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.03 0.71 7.41 -2.39 -0.02 0.69 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.13 2.54 2.47 -2.39 -0.01 2.53 16 37 H 0.06 1.85 7.79 -2.39 -0.02 1.83 16 38 H 0.07 2.48 6.91 -2.39 -0.02 2.47 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 41 H 0.01 0.53 7.57 -2.38 -0.02 0.51 16 42 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.08 2.31 7.04 -2.38 -0.02 2.30 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.09 339.05 5.49 -61.61 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.89 Total: 17.56 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 4.88 Total: -27.71 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -2.12 Total: -76.43 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.05 Total: -20.65 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -67.09 5.49 -61.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565424305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.520 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds