Wall clock time and date at job start Tue Mar 31 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.53006 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.56091 * 29.31044 * 4 3 2 6 6 C 1.52999 * 117.49645 * 243.62358 * 4 3 2 7 7 C 1.53000 * 117.49729 * 174.99887 * 4 3 2 8 8 H 1.08998 * 117.51857 * 0.02562 * 7 4 3 9 9 C 1.50699 * 117.49942 * 214.97623 * 7 4 3 10 10 O 1.21280 * 119.99808 * 359.97438 * 9 7 4 11 11 N 1.34772 * 119.99949 * 179.97438 * 9 7 4 12 12 C 1.46923 * 120.63343 * 0.03442 * 11 9 7 13 13 C 1.53195 * 108.77575 * 233.58368 * 12 11 9 14 14 C 1.53046 * 109.30793 * 305.36150 * 13 12 11 15 15 C 1.53000 * 109.45801 * 181.38429 * 14 13 12 16 16 C 1.50694 * 109.47020 * 174.99945 * 15 14 13 17 17 H 1.08001 * 120.00190 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00137 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99884 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00489 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46947 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47299 * 119.99879 * 20 18 16 23 23 H 1.48493 * 109.47638 * 240.00325 * 20 18 16 24 24 C 1.53043 * 109.53700 * 61.36640 * 14 13 12 25 25 C 1.46931 * 120.62926 * 180.02562 * 11 9 7 26 26 H 1.09002 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47075 * 299.99862 * 1 2 3 28 28 H 1.08999 * 109.46866 * 59.99731 * 1 2 3 29 29 H 1.09001 * 109.46784 * 239.99991 * 2 1 3 30 30 H 1.08999 * 109.46866 * 120.00269 * 2 1 3 31 31 H 1.09001 * 109.47349 * 60.00336 * 3 2 1 32 32 H 1.08999 * 109.47520 * 299.99869 * 3 2 1 33 33 H 1.09002 * 117.49468 * 145.02157 * 6 4 3 34 34 H 1.08995 * 117.52234 * 359.97438 * 6 4 3 35 35 H 1.08996 * 109.59375 * 113.79430 * 12 11 9 36 36 H 1.09006 * 109.58686 * 353.36430 * 12 11 9 37 37 H 1.08990 * 109.49959 * 185.41234 * 13 12 11 38 38 H 1.08999 * 109.49609 * 65.30943 * 13 12 11 39 39 H 1.08997 * 109.46079 * 301.34562 * 14 13 12 40 40 H 1.09002 * 109.47010 * 295.00151 * 15 14 13 41 41 H 1.08995 * 109.47078 * 54.99931 * 15 14 13 42 42 H 0.97000 * 119.99991 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.49738 * 58.58741 * 24 14 13 44 44 H 1.09003 * 109.49316 * 178.68106 * 24 14 13 45 45 H 1.09001 * 109.58511 * 6.62918 * 25 11 9 46 46 H 1.08996 * 109.70113 * 246.27382 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 4.0406 0.5850 -0.4804 6 6 4.2760 2.0456 1.2167 7 6 4.2765 2.7945 -0.1176 8 1 3.6516 3.6841 -0.1954 9 6 5.5697 2.8386 -0.8901 10 8 6.0127 1.8260 -1.3893 11 7 6.2339 4.0034 -1.0262 12 6 5.7103 5.2383 -0.4265 13 6 5.6158 6.3130 -1.5141 14 6 6.9803 6.4714 -2.1889 15 6 6.8987 7.5684 -3.2523 16 6 8.2690 7.8098 -3.8310 17 1 9.1137 7.2384 -3.4756 18 6 8.4446 8.7610 -4.8136 19 7 7.4161 9.4572 -5.2462 20 14 10.1433 9.0609 -5.5305 21 1 11.1226 8.1544 -4.8790 22 1 10.1183 8.7942 -6.9912 23 1 10.5394 10.4720 -5.2917 24 6 7.3814 5.1502 -2.8489 25 6 7.4955 4.0624 -1.7769 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 5.2109 1.5849 1.5357 34 1 3.6507 2.4429 2.0163 35 1 6.3826 5.5751 0.3625 36 1 4.7201 5.0513 -0.0107 37 1 5.3202 7.2608 -1.0643 38 1 4.8753 6.0153 -2.2564 39 1 7.7253 6.7450 -1.4417 40 1 6.2193 7.2558 -4.0453 41 1 6.5289 8.4877 -2.7984 42 1 7.5397 10.1267 -5.9372 43 1 6.6242 4.8635 -3.5787 44 1 8.3423 5.2705 -3.3492 45 1 7.6834 3.0996 -2.2520 46 1 8.3153 4.3018 -1.0996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571564829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:39 Heat of formation + Delta-G solvation = -64.140715 kcal Electronic energy + Delta-G solvation = -21866.868335 eV Core-core repulsion = 18754.990260 eV Total energy + Delta-G solvation = -3111.878076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41718 -39.21341 -37.88642 -35.71663 -34.74337 -33.95287 -32.10730 -29.98542 -28.35301 -26.55604 -25.32941 -23.85285 -23.13308 -22.68105 -21.52821 -20.93953 -19.74515 -18.48735 -18.22181 -17.06296 -16.55330 -16.32644 -16.04775 -15.49027 -15.29807 -15.08528 -14.83655 -14.55600 -14.22066 -14.17977 -13.92651 -13.66666 -13.40575 -13.08608 -13.02342 -12.86461 -12.73441 -12.51789 -12.32919 -12.18555 -12.13550 -11.92221 -11.79656 -11.64101 -11.34968 -11.17154 -11.06277 -11.03193 -10.79975 -10.65814 -10.53200 -9.61840 -8.18293 -6.27141 1.38535 1.39845 1.47241 1.51875 1.99515 2.41078 2.86365 3.15390 3.43057 3.73906 3.81487 3.92470 4.03239 4.10577 4.14817 4.21473 4.22879 4.31403 4.39006 4.41299 4.57269 4.66346 4.68799 4.79701 4.86118 4.87298 4.91113 4.95547 4.98125 5.02693 5.09588 5.10661 5.22980 5.29013 5.32902 5.36884 5.38556 5.42890 5.53556 5.54978 5.60283 5.80080 5.89309 6.28750 6.44895 6.89734 7.15293 7.41390 8.93670 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.032966 B = 0.002972 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.163725 B = 9418.145775 C = 9667.499733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.123 4.123 5 H 0.091 0.909 6 C -0.127 4.127 7 C -0.199 4.199 8 H 0.146 0.854 9 C 0.535 3.465 10 O -0.594 6.594 11 N -0.604 5.604 12 C 0.113 3.887 13 C -0.126 4.126 14 C -0.073 4.073 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.062 0.938 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.958 3.042 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.279 1.279 24 C -0.109 4.109 25 C 0.117 3.883 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.063 0.937 40 H -0.017 1.017 41 H -0.007 1.007 42 H 0.261 0.739 43 H 0.038 0.962 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.017 -14.400 16.098 24.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.122 4.122 4 C -0.141 4.141 5 H 0.109 0.891 6 C -0.164 4.164 7 C -0.220 4.220 8 H 0.163 0.837 9 C 0.325 3.675 10 O -0.476 6.476 11 N -0.335 5.335 12 C -0.009 4.009 13 C -0.164 4.164 14 C -0.092 4.092 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.080 0.920 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.783 3.217 21 H -0.185 1.185 22 H -0.209 1.209 23 H -0.205 1.205 24 C -0.148 4.148 25 C -0.006 4.006 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.153 0.847 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.002 0.998 41 H 0.012 0.988 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.816 -14.779 15.726 24.139 hybrid contribution 1.053 0.662 -1.312 1.808 sum -9.762 -14.117 14.414 22.413 Atomic orbital electron populations 1.21771 0.95043 1.01988 1.02119 1.21495 0.96334 0.96233 1.01945 1.21233 0.90258 0.97743 1.02923 1.22445 0.95834 0.94161 1.01706 0.89104 1.23197 1.02808 1.00367 0.90018 1.22366 0.96344 1.00060 1.03195 0.83662 1.20342 0.85471 0.82179 0.79492 1.90631 1.70203 1.35336 1.51406 1.48196 1.23581 1.08951 1.52794 1.21986 1.01509 0.82338 0.95018 1.21967 0.96972 0.99412 0.98086 1.21044 0.96687 0.94369 0.97103 1.19019 0.95239 0.93065 0.93098 1.21706 0.95498 1.19320 1.20063 0.92005 1.25935 1.00602 0.96020 0.97443 1.70102 1.32069 1.24984 1.30467 0.85499 0.80021 0.78127 0.78027 1.18537 1.20886 1.20464 1.21734 1.01521 0.94492 0.97018 1.21557 0.85781 0.99239 0.94007 0.92415 0.91890 0.92962 0.93051 0.91435 0.89677 0.91838 0.89276 0.84678 0.89586 0.86804 0.89857 0.93141 0.91823 0.99843 0.98821 0.92996 0.94342 0.91496 0.90866 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.65 5.89 30.60 0.18 -1.47 16 3 C -0.08 -1.17 5.50 30.60 0.17 -1.01 16 4 C -0.12 -2.29 5.25 -10.79 -0.06 -2.35 16 5 H 0.09 2.19 7.60 -2.39 -0.02 2.17 16 6 C -0.13 -1.93 9.88 30.60 0.30 -1.63 16 7 C -0.20 -4.01 4.85 -11.54 -0.06 -4.06 16 8 H 0.15 2.30 6.56 -2.39 -0.02 2.28 16 9 C 0.53 15.76 7.48 87.66 0.66 16.42 16 10 O -0.59 -22.30 15.67 -3.03 -0.05 -22.35 16 11 N -0.60 -17.19 2.97 -818.99 -2.43 -19.62 16 12 C 0.11 2.57 6.35 86.36 0.55 3.12 16 13 C -0.13 -3.79 5.36 30.67 0.16 -3.62 16 14 C -0.07 -2.83 2.10 -10.76 -0.02 -2.85 16 15 C 0.03 1.68 4.45 29.85 0.13 1.81 16 16 C -0.53 -29.32 8.39 25.60 0.21 -29.11 16 17 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 18 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 19 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 20 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 C -0.11 -4.12 5.19 30.66 0.16 -3.96 16 25 C 0.12 3.72 6.43 86.35 0.56 4.27 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.87 7.87 -2.39 -0.02 0.85 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.14 1.23 8.03 -2.39 -0.02 1.21 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.11 1.86 5.51 -2.38 -0.01 1.84 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 41 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 2.71 6.91 -2.39 -0.02 2.69 16 45 H 0.07 2.51 7.01 -2.39 -0.02 2.49 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -69.89 362.25 4.87 -65.02 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.92 Total: 12.33 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 4.12 Total: -25.12 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -2.15 Total: -76.28 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.89 4.87 -65.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571564829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.879 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds