Wall clock time and date at job start Tue Mar 31 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46938 * 2 1 4 4 N 1.46494 * 109.47000 * 119.99465 * 2 1 3 5 5 C 1.46502 * 119.99767 * 120.21666 * 4 2 1 6 6 C 1.50702 * 109.46858 * 250.54441 * 5 4 2 7 7 H 1.07993 * 120.00213 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99683 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00241 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99803 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.47117 * 59.99988 * 10 8 6 12 12 H 1.48500 * 109.47499 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47151 * 300.00215 * 10 8 6 14 14 C 1.34783 * 120.00562 * 300.21317 * 4 2 1 15 15 O 1.21614 * 119.99284 * 3.51429 * 14 4 2 16 16 C 1.47094 * 120.00119 * 183.50911 * 14 4 2 17 17 C 1.31554 * 118.10250 * 212.40802 * 16 14 4 18 18 C 1.50095 * 123.79166 * 180.44189 * 17 16 14 19 19 C 1.53012 * 110.13541 * 342.83868 * 18 17 16 20 20 C 1.53000 * 109.62725 * 169.44993 * 19 18 17 21 21 C 1.52994 * 109.62720 * 289.84144 * 19 18 17 22 22 C 1.53358 * 108.50475 * 49.74533 * 19 18 17 23 23 C 1.50093 * 118.10883 * 32.43506 * 16 14 4 24 24 H 1.08996 * 109.47769 * 306.99037 * 1 2 3 25 25 H 1.09002 * 109.46981 * 66.99256 * 1 2 3 26 26 H 1.08998 * 109.47105 * 186.98885 * 1 2 3 27 27 H 1.08997 * 109.47279 * 240.00163 * 2 1 3 28 28 H 1.08996 * 109.47418 * 184.59579 * 3 2 1 29 29 H 1.09008 * 109.47083 * 304.59462 * 3 2 1 30 30 H 1.08999 * 109.46992 * 64.59181 * 3 2 1 31 31 H 1.08997 * 109.47494 * 10.54329 * 5 4 2 32 32 H 1.09004 * 109.47334 * 130.54876 * 5 4 2 33 33 H 0.96999 * 119.99897 * 179.97438 * 9 8 6 34 34 H 1.08001 * 118.10582 * 0.43208 * 17 16 14 35 35 H 1.08998 * 109.36206 * 222.63316 * 18 17 16 36 36 H 1.09003 * 109.24834 * 102.97161 * 18 17 16 37 37 H 1.09000 * 109.46873 * 60.00315 * 20 19 18 38 38 H 1.08997 * 109.47213 * 299.99811 * 20 19 18 39 39 H 1.09009 * 109.46586 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47615 * 299.60652 * 21 19 18 41 41 H 1.08994 * 109.47250 * 59.60917 * 21 19 18 42 42 H 1.09005 * 109.46705 * 179.60854 * 21 19 18 43 43 H 1.09001 * 109.63310 * 51.67464 * 22 19 18 44 44 H 1.09004 * 109.62902 * 172.26014 * 22 19 18 45 45 H 1.08999 * 109.35783 * 283.01265 * 23 16 14 46 46 H 1.09006 * 109.35913 * 42.73674 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8645 -1.8788 1.0618 6 6 2.0874 -3.0991 1.4842 7 1 1.0654 -2.9994 1.8187 8 6 2.6810 -4.3429 1.4424 9 7 3.9254 -4.4644 1.0345 10 14 1.7181 -5.8553 1.9666 11 1 0.5178 -6.0014 1.1043 12 1 2.5752 -7.0602 1.8291 13 1 1.2953 -5.7069 3.3823 14 6 1.6892 -0.2325 2.4204 15 8 0.9353 0.7152 2.5325 16 6 2.2418 -0.8789 3.6205 17 6 1.5001 -0.9063 4.7067 18 6 1.9400 -1.5229 6.0026 19 6 3.1310 -2.4538 5.7655 20 6 3.7345 -2.8686 7.1089 21 6 2.6677 -3.6973 5.0041 22 6 4.1809 -1.7003 4.9397 23 6 3.6195 -1.4684 3.5354 24 1 -0.3634 0.6183 0.8208 25 1 -0.3633 0.4017 -0.9459 26 1 -0.3633 -1.0200 0.1250 27 1 1.8934 -0.5138 -0.8900 28 1 3.1268 1.4438 -0.0823 29 1 1.6109 1.9796 -0.8460 30 1 1.7454 1.9321 0.9283 31 1 3.1756 -1.9879 0.0229 32 1 3.7449 -1.7715 1.6955 33 1 4.3430 -5.3393 1.0055 34 1 0.5179 -0.4593 4.6636 35 1 1.1152 -2.0930 6.4299 36 1 2.2308 -0.7334 6.6957 37 1 2.9810 -3.3884 7.7006 38 1 4.0699 -1.9814 7.6460 39 1 4.5822 -3.5319 6.9369 40 1 1.9156 -4.2239 5.5916 41 1 2.2383 -3.3988 4.0478 42 1 3.5193 -4.3553 4.8306 43 1 4.3978 -0.7413 5.4103 44 1 5.0924 -2.2947 4.8761 45 1 3.5736 -2.4185 3.0031 46 1 4.2731 -0.7831 2.9956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581650327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:04 Heat of formation + Delta-G solvation = -39.518132 kcal Electronic energy + Delta-G solvation = -24249.097687 eV Core-core repulsion = 21138.287327 eV Total energy + Delta-G solvation = -3110.810360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53415 -39.67233 -37.09745 -35.42874 -34.20276 -32.73496 -31.51996 -28.91281 -28.13318 -28.04384 -27.72949 -25.03660 -24.31991 -23.17278 -21.35342 -19.90137 -18.63902 -18.25340 -17.23575 -16.81408 -16.37710 -16.00671 -15.71949 -15.57972 -15.02779 -14.91270 -14.59974 -14.33230 -14.09991 -14.00933 -13.73525 -13.40483 -13.32728 -13.02938 -12.84837 -12.76274 -12.69106 -12.63075 -12.57997 -12.41140 -12.19077 -12.13331 -12.04339 -11.69504 -11.58937 -11.26315 -11.09245 -10.84785 -10.53535 -10.21640 -9.66875 -9.29544 -8.13871 -6.23055 0.81398 1.40459 1.43448 1.48440 2.20487 2.45464 2.59531 3.17534 3.69855 3.78201 3.99842 4.01971 4.24664 4.28154 4.35034 4.38523 4.44621 4.61645 4.67759 4.72562 4.76662 4.81933 4.89782 4.92743 4.96199 4.97974 5.01918 5.05989 5.08850 5.14445 5.18367 5.27428 5.31193 5.33460 5.40985 5.41172 5.48045 5.61580 5.71423 5.75532 5.82848 5.94094 6.03429 6.20529 6.62655 6.92390 7.39475 7.51094 8.90981 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.009432 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.600038 B = 2967.788855 C = 4351.618529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 C -0.153 4.153 4 N -0.593 5.593 5 C 0.220 3.780 6 C -0.520 4.520 7 H 0.040 0.960 8 C 0.045 3.955 9 N -0.911 5.911 10 Si 0.920 3.080 11 H -0.285 1.285 12 H -0.284 1.284 13 H -0.256 1.256 14 C 0.545 3.455 15 O -0.592 6.592 16 C -0.142 4.142 17 C -0.104 4.104 18 C -0.071 4.071 19 C -0.061 4.061 20 C -0.133 4.133 21 C -0.153 4.153 22 C -0.102 4.102 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.266 0.734 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.119 0.881 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 4.386 7.167 8.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 C -0.211 4.211 4 N -0.322 5.322 5 C 0.100 3.900 6 C -0.558 4.558 7 H 0.059 0.941 8 C -0.156 4.156 9 N -0.550 5.550 10 Si 0.746 3.254 11 H -0.211 1.211 12 H -0.210 1.210 13 H -0.181 1.181 14 C 0.337 3.663 15 O -0.477 6.477 16 C -0.145 4.145 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.061 4.061 20 C -0.190 4.190 21 C -0.210 4.210 22 C -0.139 4.139 23 C -0.134 4.134 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.054 0.946 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.136 0.864 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.136 4.719 7.135 8.555 hybrid contribution -0.566 -1.142 -0.460 1.355 sum -0.702 3.577 6.674 7.605 Atomic orbital electron populations 1.22060 0.95141 1.01071 1.02796 1.21173 0.94833 0.93614 0.87563 1.22066 1.00696 0.95382 1.02988 1.48294 1.50133 1.28788 1.04984 1.20056 0.91261 0.81116 0.97531 1.21297 0.98434 0.92028 1.44078 0.94134 1.25236 0.95279 1.00173 0.94940 1.69962 1.12756 1.24951 1.47320 0.86216 0.78897 0.80196 0.80065 1.21069 1.20957 1.18051 1.18917 0.80010 0.82703 0.84712 1.90586 1.38777 1.30755 1.87592 1.20665 0.98690 1.02066 0.93089 1.22666 0.98408 0.96589 0.94674 1.20602 0.98033 0.98501 0.93662 1.20566 0.94967 0.94508 0.96051 1.21799 1.00637 1.01684 0.94854 1.22085 1.00405 0.97161 1.01345 1.21663 0.97804 1.00157 0.94276 1.21013 0.91162 1.02715 0.98496 0.92414 0.89917 0.94569 0.89777 0.92933 0.89677 0.92856 0.96722 0.91977 0.92466 0.88371 0.89738 0.88432 0.91927 0.91283 0.92715 0.93275 0.91834 0.94023 0.91263 0.91620 0.86393 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 8.99 71.98 0.65 -4.82 16 2 C 0.13 4.92 3.29 44.99 0.15 5.07 16 3 C -0.15 -5.01 9.18 71.98 0.66 -4.35 16 4 N -0.59 -25.64 2.51 -806.39 -2.02 -27.66 16 5 C 0.22 10.40 4.84 85.63 0.41 10.81 16 6 C -0.52 -26.12 5.85 25.60 0.15 -25.97 16 7 H 0.04 2.16 7.81 -2.91 -0.02 2.14 16 8 C 0.04 2.26 4.93 84.66 0.42 2.67 16 9 N -0.91 -47.73 13.29 21.45 0.28 -47.44 16 10 Si 0.92 40.80 29.35 68.60 2.01 42.81 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 14 C 0.55 23.99 6.50 86.57 0.56 24.55 16 15 O -0.59 -27.37 12.70 -4.07 -0.05 -27.43 16 16 C -0.14 -5.67 4.21 -18.29 -0.08 -5.75 16 17 C -0.10 -3.66 8.95 24.93 0.22 -3.44 16 18 C -0.07 -1.95 4.87 29.66 0.14 -1.81 16 19 C -0.06 -1.74 0.78 -52.06 -0.04 -1.78 16 20 C -0.13 -2.90 8.48 71.98 0.61 -2.29 16 21 C -0.15 -5.31 7.81 71.98 0.56 -4.75 16 22 C -0.10 -3.13 4.94 30.72 0.15 -2.98 16 23 C -0.10 -3.75 3.09 29.66 0.09 -3.66 16 24 H 0.06 2.26 6.27 -2.39 -0.01 2.24 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 3.05 7.58 -2.39 -0.02 3.03 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.05 1.97 6.19 -2.39 -0.01 1.96 16 31 H 0.01 0.74 7.60 -2.39 -0.02 0.72 16 32 H 0.06 2.98 3.73 -2.38 -0.01 2.97 16 33 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 34 H 0.10 3.61 7.56 -2.91 -0.02 3.59 16 35 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 36 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 2.62 4.03 -2.39 -0.01 2.62 16 42 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 44 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.12 5.26 3.17 -2.39 -0.01 5.25 16 46 H 0.05 1.94 7.41 -2.38 -0.02 1.93 16 Total: -1.00 -56.59 341.33 5.84 -50.75 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.94 Total: 27.44 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 4.67 Total: -18.48 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -1.74 Total: -75.11 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.01 Total: 42.81 kcal Total: -56.59 5.84 -50.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581650327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.236 kcal (2) G-P(sol) polarization free energy of solvation -56.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds