Wall clock time and date at job start Tue Mar 31 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 120.00247 * 2 1 4 4 C 1.52999 * 109.47584 * 124.99873 * 3 2 1 5 5 C 1.52996 * 109.47078 * 59.99677 * 4 3 2 6 6 C 1.53008 * 109.46893 * 299.99972 * 4 3 2 7 7 C 1.50693 * 109.47211 * 180.02562 * 4 3 2 8 8 O 1.21278 * 120.00221 * 1.64369 * 7 4 3 9 9 N 1.34783 * 119.99890 * 181.64841 * 7 4 3 10 10 C 1.46928 * 120.63104 * 175.04328 * 9 7 4 11 11 C 1.53194 * 108.89212 * 233.68010 * 10 9 7 12 12 C 1.53039 * 109.30880 * 305.29550 * 11 10 9 13 13 C 1.53010 * 109.45848 * 181.38639 * 12 11 10 14 14 C 1.50694 * 109.47066 * 174.99577 * 13 12 11 15 15 H 1.08003 * 120.00249 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99985 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99673 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00061 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47140 * 60.00304 * 18 16 14 20 20 H 1.48501 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47167 * 299.99657 * 18 16 14 22 22 C 1.53038 * 109.54546 * 61.36478 * 12 11 10 23 23 C 1.47204 * 120.81237 * 355.18487 * 9 7 4 24 24 H 1.07992 * 119.99810 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.99534 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99841 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.47024 * 4.99691 * 3 2 1 28 28 H 1.09009 * 109.47113 * 244.99997 * 3 2 1 29 29 H 1.09001 * 109.47336 * 167.11451 * 5 4 3 30 30 H 1.09006 * 109.47417 * 287.11161 * 5 4 3 31 31 H 1.08995 * 109.47079 * 47.11384 * 5 4 3 32 32 H 1.09001 * 109.46924 * 309.87369 * 6 4 3 33 33 H 1.08999 * 109.46929 * 69.87456 * 6 4 3 34 34 H 1.08999 * 109.46692 * 189.87292 * 6 4 3 35 35 H 1.08996 * 109.58913 * 113.81952 * 10 9 7 36 36 H 1.09001 * 109.58679 * 353.53426 * 10 9 7 37 37 H 1.09003 * 109.49811 * 65.24330 * 11 10 9 38 38 H 1.08997 * 109.49460 * 185.30823 * 11 10 9 39 39 H 1.09002 * 109.45808 * 301.35188 * 12 11 10 40 40 H 1.08992 * 109.46788 * 294.99625 * 13 12 11 41 41 H 1.09002 * 109.46536 * 54.99633 * 13 12 11 42 42 H 0.96999 * 119.99950 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.49171 * 58.58067 * 22 12 11 44 44 H 1.08995 * 109.50159 * 178.65180 * 22 12 11 45 45 H 1.08998 * 109.53393 * 6.53090 * 23 9 7 46 46 H 1.09006 * 109.67543 * 246.22525 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 6 4.0245 0.1729 1.0560 6 6 2.2521 1.1963 2.4890 7 6 3.7881 2.6384 1.1819 8 8 3.5482 3.4771 0.3394 9 7 4.7284 2.8737 2.1184 10 6 5.5461 4.0934 2.0684 11 6 7.0262 3.7004 2.1079 12 6 7.2844 2.8239 3.3357 13 6 8.7688 2.4578 3.3975 14 6 9.0464 1.6990 4.6695 15 1 8.2445 1.4983 5.3646 16 6 10.3244 1.2619 4.9465 17 7 11.3011 1.5076 4.1008 18 14 10.6684 0.3207 6.5229 19 1 9.8520 -0.9195 6.5472 20 1 12.1093 -0.0335 6.5835 21 1 10.3178 1.1672 7.6915 22 6 6.4478 1.5462 3.2377 23 6 4.9612 1.9149 3.2108 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6214 1.4025 -0.9315 29 1 4.8472 0.3194 1.7559 30 1 3.5165 -0.7643 1.2837 31 1 4.4149 0.1368 0.0390 32 1 1.4324 1.9147 2.4984 33 1 1.8508 0.1860 2.5681 34 1 2.9154 1.3908 3.3318 35 1 5.3127 4.7252 2.9254 36 1 5.3367 4.6362 1.1466 37 1 7.2794 3.1451 1.2048 38 1 7.6398 4.5993 2.1664 39 1 7.0075 3.3709 4.2370 40 1 9.0255 1.8359 2.5400 41 1 9.3684 3.3679 3.3790 42 1 12.2003 1.2004 4.2958 43 1 6.7065 1.0113 2.3238 44 1 6.6503 0.9117 4.1005 45 1 4.3653 1.0180 3.0417 46 1 4.6796 2.3667 4.1620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582361745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:48 Heat of formation + Delta-G solvation = -46.255363 kcal Electronic energy + Delta-G solvation = -22936.087566 eV Core-core repulsion = 19824.985058 eV Total energy + Delta-G solvation = -3111.102509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.84551 -38.95624 -37.63059 -35.76522 -34.33208 -33.47293 -31.80015 -29.84527 -28.31701 -27.61056 -26.62340 -24.39037 -24.14763 -22.52623 -21.21728 -20.23974 -19.50855 -18.39661 -17.63343 -17.11302 -16.52664 -16.39488 -16.06271 -15.54795 -15.17328 -15.06217 -14.88758 -14.57238 -14.47547 -13.96146 -13.88527 -13.58357 -13.31950 -13.12366 -13.02061 -12.90504 -12.75223 -12.50377 -12.44560 -12.33457 -12.12667 -11.93804 -11.82439 -11.79511 -11.59891 -11.32480 -11.01554 -10.84866 -10.53083 -10.45216 -10.13818 -9.60177 -8.14480 -6.24246 1.43576 1.44482 1.45823 1.53200 1.60465 2.05553 2.44609 3.19362 3.38966 3.75453 3.88890 3.92422 4.01959 4.07517 4.18409 4.23495 4.28876 4.38921 4.40328 4.52494 4.66232 4.68979 4.76106 4.78616 4.82299 4.89567 4.94118 4.94642 5.02159 5.08624 5.09528 5.18334 5.27821 5.29959 5.36425 5.36558 5.43961 5.56039 5.60807 5.80278 5.83571 5.90941 5.96024 6.30302 6.45563 6.92667 7.14861 7.44720 8.97367 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.003928 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.653395 B = 7127.494253 C = 7733.372436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C -0.065 4.065 4 C -0.070 4.070 5 C -0.159 4.159 6 C -0.152 4.152 7 C 0.517 3.483 8 O -0.589 6.589 9 N -0.604 5.604 10 C 0.117 3.883 11 C -0.121 4.121 12 C -0.073 4.073 13 C 0.033 3.967 14 C -0.526 4.526 15 H 0.069 0.931 16 C -0.004 4.004 17 N -0.939 5.939 18 Si 0.960 3.040 19 H -0.263 1.263 20 H -0.291 1.291 21 H -0.268 1.268 22 C -0.115 4.115 23 C 0.090 3.910 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.123 0.877 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.062 0.938 40 H -0.015 1.015 41 H -0.017 1.017 42 H 0.260 0.740 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.528 -3.876 -3.000 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.103 4.103 4 C -0.073 4.073 5 C -0.216 4.216 6 C -0.209 4.209 7 C 0.307 3.693 8 O -0.470 6.470 9 N -0.335 5.335 10 C -0.006 4.006 11 C -0.159 4.159 12 C -0.091 4.091 13 C -0.004 4.004 14 C -0.564 4.564 15 H 0.087 0.913 16 C -0.201 4.201 17 N -0.579 5.579 18 Si 0.785 3.215 19 H -0.187 1.187 20 H -0.217 1.217 21 H -0.193 1.193 22 C -0.153 4.153 23 C -0.031 4.031 24 H 0.110 0.890 25 H 0.131 0.869 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.146 0.854 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.473 -3.452 -3.450 21.047 hybrid contribution 1.178 -0.014 0.352 1.229 sum -19.295 -3.466 -3.098 19.847 Atomic orbital electron populations 1.23993 0.95735 1.02428 1.00554 1.22902 0.96126 0.97688 1.00316 1.20531 0.97056 0.96317 0.96398 1.20703 0.95977 0.91652 0.98935 1.22312 0.98876 0.97524 1.02900 1.22259 1.00097 1.04166 0.94388 1.21221 0.79384 0.89164 0.79538 1.90624 1.67547 1.48963 1.39857 1.48246 1.35508 1.22362 1.27411 1.21538 0.89541 0.86695 1.02791 1.21900 0.95521 1.00104 0.98377 1.21037 0.95754 0.95816 0.96541 1.19007 0.91803 0.94276 0.95272 1.21643 0.94259 1.34674 1.05849 0.91286 1.25976 0.96416 0.97484 1.00198 1.70111 1.01285 1.48248 1.38305 0.85572 0.76839 0.79393 0.79686 1.18724 1.21680 1.19252 1.21837 0.93668 0.97552 1.02243 1.22637 0.96782 0.94041 0.89613 0.88962 0.86889 0.85882 0.92159 0.92190 0.90898 0.88585 0.92820 0.92446 0.89114 0.90259 0.90297 0.90524 0.93599 0.91212 0.91955 0.99705 0.99836 0.93097 0.93181 0.90267 0.85409 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.32 67.78 0.97 -1.64 16 2 C -0.15 -2.36 7.86 25.64 0.20 -2.16 16 3 C -0.07 -1.37 3.96 29.85 0.12 -1.25 16 4 C -0.07 -1.46 0.52 -52.93 -0.03 -1.49 16 5 C -0.16 -3.02 7.49 71.98 0.54 -2.48 16 6 C -0.15 -2.46 7.65 71.98 0.55 -1.91 16 7 C 0.52 14.93 6.49 87.65 0.57 15.50 16 8 O -0.59 -21.28 15.42 -3.02 -0.05 -21.33 16 9 N -0.60 -16.78 2.97 -818.19 -2.43 -19.21 16 10 C 0.12 3.46 6.41 86.36 0.55 4.02 16 11 C -0.12 -4.11 5.36 30.67 0.16 -3.95 16 12 C -0.07 -2.76 2.10 -10.76 -0.02 -2.79 16 13 C 0.03 1.70 4.45 29.85 0.13 1.83 16 14 C -0.53 -28.19 8.39 25.60 0.21 -27.98 16 15 H 0.07 3.43 7.06 -2.91 -0.02 3.41 16 16 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 17 N -0.94 -56.65 13.29 21.45 0.28 -56.37 16 18 Si 0.96 42.79 29.54 68.60 2.03 44.81 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 C -0.11 -3.69 4.87 30.67 0.15 -3.54 16 23 C 0.09 2.17 3.93 86.31 0.34 2.51 16 24 H 0.09 1.30 7.84 -2.91 -0.02 1.28 16 25 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16 26 H 0.12 1.59 7.12 -2.91 -0.02 1.57 16 27 H 0.06 1.39 7.73 -2.38 -0.02 1.37 16 28 H 0.06 1.45 8.12 -2.38 -0.02 1.43 16 29 H 0.07 1.53 3.91 -2.39 -0.01 1.52 16 30 H 0.10 1.30 7.05 -2.38 -0.02 1.29 16 31 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 32 H 0.06 0.97 8.11 -2.39 -0.02 0.95 16 33 H 0.09 1.12 7.44 -2.39 -0.02 1.10 16 34 H 0.08 1.22 4.73 -2.39 -0.01 1.21 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.41 7.03 -2.39 -0.02 2.39 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.05 1.70 7.39 -2.39 -0.02 1.68 16 44 H 0.08 2.65 6.91 -2.39 -0.02 2.64 16 45 H 0.13 2.44 2.89 -2.39 -0.01 2.44 16 46 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -67.24 346.56 5.68 -61.55 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.94 Total: 15.62 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 4.91 Total: -25.08 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -2.15 Total: -75.58 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -67.24 5.68 -61.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582361745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.297 kcal (2) G-P(sol) polarization free energy of solvation -67.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds