Wall clock time and date at job start Tue Mar 31 2020 00:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47469 * 2 1 4 4 C 1.50705 * 112.84909 * 304.39873 * 3 2 1 5 5 O 1.21281 * 120.00323 * 111.86396 * 4 3 2 6 6 N 1.34780 * 119.99676 * 291.86531 * 4 3 2 7 7 C 1.46926 * 120.62906 * 174.95424 * 6 4 3 8 8 C 1.53192 * 108.77542 * 233.58476 * 7 6 4 9 9 C 1.53039 * 109.31371 * 305.36423 * 8 7 6 10 10 C 1.53001 * 109.45992 * 181.38227 * 9 8 7 11 11 C 1.50704 * 109.46812 * 174.99948 * 10 9 8 12 12 H 1.07997 * 120.00308 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99595 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00115 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99684 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47254 * 60.00266 * 15 13 11 17 17 H 1.48501 * 109.46932 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47194 * 300.00100 * 15 13 11 19 19 C 1.53040 * 109.53490 * 61.36475 * 9 8 7 20 20 C 1.46932 * 120.63099 * 354.93143 * 6 4 3 21 21 C 1.53781 * 113.69139 * 75.66136 * 3 2 1 22 22 C 1.53777 * 87.08121 * 89.12894 * 21 3 2 23 23 C 1.53778 * 113.62095 * 173.20007 * 3 2 1 24 24 H 1.09000 * 109.47231 * 295.37285 * 1 2 3 25 25 H 1.08998 * 109.46761 * 55.37469 * 1 2 3 26 26 H 1.09005 * 109.47243 * 175.36863 * 1 2 3 27 27 H 1.09006 * 109.47344 * 239.99898 * 2 1 3 28 28 H 1.08998 * 109.47239 * 120.00028 * 2 1 3 29 29 H 1.09002 * 109.58905 * 113.79876 * 7 6 4 30 30 H 1.08994 * 109.58804 * 353.37464 * 7 6 4 31 31 H 1.08998 * 109.49692 * 65.31874 * 8 7 6 32 32 H 1.09001 * 109.49681 * 185.41531 * 8 7 6 33 33 H 1.09000 * 109.46259 * 301.34436 * 9 8 7 34 34 H 1.08993 * 109.47492 * 295.00199 * 10 9 8 35 35 H 1.08996 * 109.46957 * 55.00823 * 10 9 8 36 36 H 0.97010 * 119.99907 * 180.02562 * 14 13 11 37 37 H 1.09008 * 109.49587 * 178.68273 * 19 9 8 38 38 H 1.09000 * 109.49995 * 58.58708 * 19 9 8 39 39 H 1.09003 * 109.58223 * 246.19992 * 20 6 4 40 40 H 1.08995 * 109.58460 * 6.62435 * 20 6 4 41 41 H 1.08997 * 113.61397 * 203.67914 * 21 3 2 42 42 H 1.09004 * 113.61443 * 334.58181 * 21 3 2 43 43 H 1.09000 * 113.61951 * 270.88996 * 22 21 3 44 44 H 1.08997 * 113.69372 * 139.98741 * 22 21 3 45 45 H 1.09008 * 113.61161 * 25.34312 * 23 3 2 46 46 H 1.08995 * 113.62295 * 156.16550 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4954 2.2557 -1.1459 5 8 0.7191 3.1623 -0.9311 6 7 1.8712 1.9754 -2.4096 7 6 1.2664 2.6850 -3.5452 8 6 0.7201 1.6531 -4.5369 9 6 1.8382 0.6830 -4.9253 10 6 1.3051 -0.3283 -5.9422 11 6 2.4345 -1.2060 -6.4171 12 1 3.4324 -1.0576 -6.0318 13 6 2.1936 -2.1983 -7.3434 14 7 0.9784 -2.3787 -7.8130 15 14 3.5932 -3.2867 -7.9315 16 1 4.1774 -4.0107 -6.7740 17 1 3.0759 -4.2682 -8.9186 18 1 4.6390 -2.4470 -8.5690 19 6 2.3291 -0.0575 -3.6792 20 6 2.8937 0.9549 -2.6777 21 6 1.9173 2.1412 1.3643 22 6 3.3168 1.5903 1.6843 23 6 3.5645 1.5569 0.1668 24 1 -0.3634 0.4404 0.9285 25 1 -0.3633 0.5839 -0.8456 26 1 -0.3634 -1.0243 -0.0830 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.0212 3.2995 -4.0360 30 1 0.4525 3.3168 -3.1897 31 1 -0.0968 1.1000 -4.0734 32 1 0.3550 2.1631 -5.4284 33 1 2.6651 1.2396 -5.3663 34 1 0.5381 -0.9449 -5.4737 35 1 0.8758 0.2026 -6.7918 36 1 0.8089 -3.0772 -8.4645 37 1 3.1092 -0.7651 -3.9601 38 1 1.4970 -0.5945 -3.2237 39 1 3.7811 1.4284 -3.0977 40 1 3.1534 0.4453 -1.7498 41 1 1.8811 3.2285 1.2963 42 1 1.1308 1.7293 1.9967 43 1 3.3025 0.6030 2.1461 44 1 3.9548 2.2967 2.2152 45 1 4.1079 0.6730 -0.1675 46 1 3.9789 2.4837 -0.2298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582548215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:06 Heat of formation + Delta-G solvation = -42.386964 kcal Electronic energy + Delta-G solvation = -23316.077697 eV Core-core repulsion = 20205.142934 eV Total energy + Delta-G solvation = -3110.934762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01584 -38.37812 -36.99272 -33.98277 -32.57620 -32.05598 -30.77173 -28.17782 -26.52887 -25.80103 -24.50080 -22.91639 -22.73436 -21.86516 -20.20028 -19.16344 -18.15648 -16.73104 -16.31482 -16.03234 -15.68765 -14.92148 -14.56791 -14.37311 -14.10506 -13.73673 -13.47938 -13.21917 -12.92063 -12.67582 -12.56810 -12.47157 -12.11886 -11.89066 -11.73061 -11.52891 -11.36053 -11.19352 -11.03311 -10.98420 -10.75515 -10.69365 -10.50718 -10.44392 -10.27280 -10.10156 -9.68810 -9.36799 -9.20018 -8.98692 -8.36851 -8.28974 -6.01133 -4.03344 2.78795 3.22364 3.30549 3.36046 3.37332 4.28350 4.33461 4.43693 4.53392 4.63138 4.80065 5.12277 5.22118 5.24128 5.33813 5.34326 5.44507 5.50742 5.53673 5.56411 5.62055 5.63113 5.70893 5.71675 5.77921 5.82571 5.94088 5.97989 6.02318 6.07761 6.16704 6.22869 6.27932 6.39207 6.41918 6.53661 6.71735 6.96852 6.99683 7.10430 7.64746 7.66264 7.80541 7.98480 8.37280 8.40754 9.02953 9.60470 11.10067 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024305 B = 0.004353 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.737533 B = 6430.295540 C = 6812.321600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.103 4.103 4 C 0.532 3.468 5 O -0.553 6.553 6 N -0.602 5.602 7 C 0.111 3.889 8 C -0.128 4.128 9 C -0.080 4.080 10 C 0.028 3.972 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.119 4.119 20 C 0.096 3.904 21 C -0.111 4.111 22 C -0.141 4.141 23 C -0.129 4.129 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 6.480 16.800 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.106 4.106 4 C 0.320 3.680 5 O -0.431 6.431 6 N -0.334 5.334 7 C -0.011 4.011 8 C -0.167 4.167 9 C -0.099 4.099 10 C -0.009 4.009 11 C -0.555 4.555 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.157 4.157 20 C -0.026 4.026 21 C -0.149 4.149 22 C -0.178 4.178 23 C -0.166 4.166 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.463 6.852 16.770 18.444 hybrid contribution 0.729 -0.745 -0.642 1.224 sum 4.191 6.107 16.128 17.748 Atomic orbital electron populations 1.21736 0.95065 1.01887 1.02168 1.21417 0.96736 0.92431 1.03156 1.22145 0.97146 0.96773 0.94542 1.20333 0.80605 0.83647 0.83441 1.90638 1.36267 1.31864 1.84338 1.48118 1.40517 1.39204 1.05541 1.21653 0.98053 0.94792 0.86585 1.22018 0.99333 0.97303 0.98010 1.21180 0.96370 0.96437 0.95876 1.19116 0.96219 0.92778 0.92774 1.21193 0.94947 1.15691 1.23671 0.92680 1.25014 0.95368 0.97530 0.96477 1.69954 1.19812 1.32973 1.30727 0.86716 0.82576 0.80448 0.78587 1.20288 1.21366 1.20304 1.21912 1.01531 0.97162 0.95106 1.22158 0.90228 0.89768 1.00471 1.22805 0.97132 1.00805 0.94138 1.22842 0.97361 1.01568 0.96055 1.23073 0.93861 1.02798 0.96875 0.92649 0.92557 0.92250 0.90356 0.90847 0.92018 0.89890 0.92168 0.91225 0.92424 0.96669 0.96649 0.92990 0.89824 0.92268 0.91804 0.89586 0.89422 0.90993 0.89880 0.91230 0.90334 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.63 37.16 0.36 -1.43 16 2 C -0.10 -1.08 4.99 -26.74 -0.13 -1.22 16 3 C -0.10 -1.19 0.30 -154.85 -0.05 -1.24 16 4 C 0.53 8.00 5.36 -10.98 -0.06 7.94 16 5 O -0.55 -10.05 15.65 5.56 0.09 -9.97 16 6 N -0.60 -8.90 2.97 -172.76 -0.51 -9.42 16 7 C 0.11 1.71 6.42 -3.71 -0.02 1.69 16 8 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 9 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 10 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 11 C -0.52 -13.85 8.39 -34.44 -0.29 -14.14 16 12 H 0.05 1.41 7.05 -52.49 -0.37 1.04 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 15 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.12 -2.01 5.12 -26.61 -0.14 -2.15 16 20 C 0.10 1.31 5.26 -3.71 -0.02 1.29 16 21 C -0.11 -1.17 6.79 -25.92 -0.18 -1.35 16 22 C -0.14 -1.18 7.73 -25.92 -0.20 -1.38 16 23 C -0.13 -1.23 5.69 -25.92 -0.15 -1.38 16 24 H 0.05 0.61 7.56 -51.93 -0.39 0.22 16 25 H 0.06 0.80 7.12 -51.93 -0.37 0.43 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.89 5.97 -51.93 -0.31 0.58 16 28 H 0.07 0.66 7.31 -51.93 -0.38 0.28 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.32 7.04 -51.93 -0.37 0.96 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 1.50 6.91 -51.92 -0.36 1.14 16 38 H 0.06 1.04 8.02 -51.93 -0.42 0.62 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.00 3.06 -51.93 -0.16 0.84 16 41 H 0.09 1.04 7.77 -51.93 -0.40 0.64 16 42 H 0.07 0.72 7.51 -51.93 -0.39 0.33 16 43 H 0.08 0.61 7.61 -51.93 -0.40 0.21 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.67 7.09 -51.92 -0.37 0.30 16 46 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -30.50 345.52 -8.97 -39.47 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -8.04 Total: -0.30 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.43 Total: -15.34 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.22 Total: -35.11 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.50 -8.97 -39.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582548215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.917 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds