Wall clock time and date at job start Tue Mar 31 2020 00:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 C 1.52997 * 115.55025 * 325.57564 * 3 2 1 5 5 C 1.52998 * 117.50037 * 111.25177 * 3 2 1 6 6 C 1.53001 * 60.00347 * 107.50977 * 5 3 2 7 7 H 1.09000 * 117.49758 * 252.51389 * 6 5 3 8 8 C 1.50692 * 117.50071 * 107.48771 * 6 5 3 9 9 O 1.21288 * 120.00011 * 291.38153 * 8 6 5 10 10 N 1.34777 * 120.00194 * 111.37615 * 8 6 5 11 11 C 1.46935 * 120.62729 * 359.72626 * 10 8 6 12 12 C 1.52761 * 109.00550 * 233.58145 * 11 10 8 13 13 C 1.53046 * 109.38166 * 305.58699 * 12 11 10 14 14 C 1.53002 * 109.45789 * 181.26123 * 13 12 11 15 15 C 1.50698 * 109.46955 * 64.93235 * 14 13 12 16 16 H 1.08008 * 120.00392 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00008 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47012 * 59.99901 * 19 17 15 21 21 H 1.48506 * 109.47133 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47376 * 299.99873 * 19 17 15 23 23 C 1.53039 * 109.53843 * 61.24320 * 13 12 11 24 24 C 1.46921 * 120.63434 * 179.97438 * 10 8 6 25 25 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47609 * 300.00256 * 1 2 3 27 27 H 1.09000 * 109.46406 * 60.00597 * 1 2 3 28 28 H 1.09000 * 109.47397 * 239.99407 * 2 1 3 29 29 H 1.09001 * 109.46916 * 119.99498 * 2 1 3 30 30 H 1.09002 * 109.47153 * 154.28077 * 4 3 2 31 31 H 1.09001 * 109.46832 * 34.28267 * 4 3 2 32 32 H 1.09004 * 109.47261 * 274.28249 * 4 3 2 33 33 H 1.08998 * 117.50041 * 215.00042 * 5 3 2 34 34 H 1.09003 * 117.49853 * 359.97438 * 5 3 2 35 35 H 1.08996 * 109.58279 * 353.41453 * 11 10 8 36 36 H 1.08998 * 109.58491 * 113.84039 * 11 10 8 37 37 H 1.08995 * 109.56306 * 185.55317 * 12 11 10 38 38 H 1.09002 * 109.36257 * 65.49800 * 12 11 10 39 39 H 1.09000 * 109.46069 * 301.21963 * 13 12 11 40 40 H 1.08997 * 109.46664 * 184.93157 * 14 13 12 41 41 H 1.09000 * 109.47436 * 304.93453 * 14 13 12 42 42 H 0.96995 * 120.00296 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.49735 * 178.68028 * 23 13 12 44 44 H 1.09000 * 109.52368 * 58.60072 * 23 13 12 45 45 H 1.08996 * 109.59152 * 246.15856 * 24 10 8 46 46 H 1.09003 * 109.58707 * 6.58469 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1864 2.4442 -0.7803 5 6 2.7392 1.9446 1.2648 6 6 3.5550 1.6567 0.0029 7 1 4.1886 0.7698 0.0047 8 6 4.0921 2.8380 -0.7631 9 8 3.3307 3.5763 -1.3515 10 7 5.4187 3.0743 -0.7943 11 6 6.3531 2.1924 -0.0815 12 6 7.2313 3.0380 0.8390 13 6 7.9071 4.1422 0.0227 14 6 8.8117 4.9709 0.9370 15 6 9.9352 4.1069 1.4491 16 1 9.9977 3.0703 1.1524 17 6 10.8829 4.6395 2.2972 18 7 10.8067 5.9016 2.6588 19 14 12.2752 3.5684 2.9324 20 1 13.0675 3.0551 1.7861 21 1 13.1533 4.3728 3.8198 22 1 11.7122 2.4260 3.6960 23 6 6.8397 5.0480 -0.5954 24 6 5.9575 4.2216 -1.5372 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3350 3.4438 -0.3720 31 1 0.1350 2.1695 -0.6952 32 1 1.4811 2.4328 -1.8297 33 1 2.5911 2.9886 1.5411 34 1 2.8356 1.2474 2.0971 35 1 5.7929 1.4702 0.5123 36 1 6.9816 1.6679 -0.8012 37 1 7.9924 2.4072 1.2980 38 1 6.6129 3.4869 1.6163 39 1 8.5057 3.6932 -0.7699 40 1 9.2246 5.8094 0.3763 41 1 8.2305 5.3476 1.7787 42 1 11.4736 6.2765 3.2551 43 1 7.3221 5.8478 -1.1572 44 1 6.2249 5.4784 0.1951 45 1 6.5532 3.8657 -2.3777 46 1 5.1364 4.8379 -1.9036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584352869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:30 Heat of formation + Delta-G solvation = -37.013127 kcal Electronic energy + Delta-G solvation = -22433.918357 eV Core-core repulsion = 19323.216621 eV Total energy + Delta-G solvation = -3110.701735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45769 -38.36288 -36.78635 -33.99445 -32.53608 -32.03271 -30.76131 -28.39031 -27.85294 -25.30317 -24.08025 -23.65286 -22.72197 -21.49374 -19.85399 -18.97140 -18.24011 -17.20568 -16.29753 -15.55980 -15.28426 -14.91340 -14.77810 -14.53967 -13.97861 -13.66430 -13.41748 -13.34537 -12.92191 -12.70317 -12.58216 -12.41114 -12.30750 -12.19246 -11.82891 -11.77622 -11.28583 -11.17957 -11.00811 -10.97382 -10.79061 -10.68871 -10.46814 -10.20796 -10.11288 -9.87284 -9.63717 -9.33593 -9.23222 -8.98663 -8.37006 -8.30579 -6.01172 -4.03423 2.61502 3.12683 3.30656 3.36012 3.37374 3.71502 4.39570 4.43692 4.54182 4.68248 4.85284 4.94273 5.09108 5.20389 5.23534 5.33806 5.40204 5.44901 5.50134 5.53367 5.62974 5.69804 5.70763 5.73097 5.80390 5.84559 5.88581 5.97800 6.00482 6.06149 6.09413 6.12645 6.37897 6.40725 6.49436 6.53584 6.71089 6.96647 6.99442 7.10326 7.62643 7.65497 7.80464 7.98475 8.36510 8.40706 9.02912 9.60333 11.10088 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.003485 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.649243 B = 8032.968345 C = 8590.812232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.092 4.092 4 C -0.107 4.107 5 C -0.145 4.145 6 C -0.187 4.187 7 H 0.121 0.879 8 C 0.543 3.457 9 O -0.547 6.547 10 N -0.602 5.602 11 C 0.104 3.896 12 C -0.119 4.119 13 C -0.080 4.080 14 C 0.028 3.972 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.129 4.129 24 C 0.112 3.888 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.261 0.739 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.903 -10.775 -5.308 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.093 4.093 4 C -0.163 4.163 5 C -0.182 4.182 6 C -0.208 4.208 7 H 0.139 0.861 8 C 0.332 3.668 9 O -0.426 6.426 10 N -0.334 5.334 11 C -0.018 4.018 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.167 4.167 24 C -0.010 4.010 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.196 -10.238 -5.520 20.760 hybrid contribution 1.254 -0.547 0.547 1.473 sum -15.942 -10.786 -4.973 19.880 Atomic orbital electron populations 1.21824 0.95338 1.01342 1.02297 1.21089 0.96200 0.93163 1.02017 1.21593 0.91014 0.96874 0.99810 1.21443 0.97201 0.97333 1.00356 1.23187 1.01519 1.02882 0.90637 1.22365 0.95582 0.99499 1.03307 0.86081 1.19623 0.81727 0.85127 0.80363 1.90655 1.56434 1.49352 1.46112 1.48122 1.05746 1.28691 1.50877 1.21860 0.91883 0.92689 0.95416 1.21818 0.98274 0.98134 0.97442 1.21189 0.95102 0.95540 0.98080 1.19115 0.93298 0.94702 0.93771 1.21201 1.09581 0.96828 1.27936 0.92661 1.25025 0.97994 0.94934 0.96507 1.69951 1.35668 1.12647 1.35219 0.86705 0.82284 0.80445 0.78830 1.20299 1.21362 1.20270 1.22028 0.97567 0.98341 0.98766 1.21662 0.97781 0.87419 0.94104 0.92877 0.92512 0.92002 0.91558 0.91686 0.91827 0.92748 0.91609 0.88313 0.87951 0.90334 0.91749 0.89733 0.92316 0.92393 0.96627 0.96670 0.92974 0.91191 0.92147 0.91939 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.92 37.16 0.33 -0.78 16 2 C -0.09 -0.73 6.12 -26.73 -0.16 -0.89 16 3 C -0.09 -0.98 2.47 -154.51 -0.38 -1.36 16 4 C -0.11 -1.24 7.74 37.16 0.29 -0.96 16 5 C -0.14 -1.54 9.52 -26.73 -0.25 -1.80 16 6 C -0.19 -2.20 4.68 -91.77 -0.43 -2.63 16 7 H 0.12 1.24 6.83 -51.93 -0.35 0.88 16 8 C 0.54 8.15 7.46 -10.99 -0.08 8.07 16 9 O -0.55 -9.49 12.52 5.55 0.07 -9.42 16 10 N -0.60 -8.98 2.98 -173.00 -0.52 -9.50 16 11 C 0.10 1.43 6.27 -3.93 -0.02 1.41 16 12 C -0.12 -2.04 5.17 -26.83 -0.14 -2.18 16 13 C -0.08 -1.56 2.10 -90.57 -0.19 -1.75 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 15 C -0.52 -13.97 8.39 -34.44 -0.29 -14.26 16 16 H 0.06 1.43 7.06 -52.48 -0.37 1.06 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.13 -2.20 5.36 -26.59 -0.14 -2.34 16 24 C 0.11 1.72 6.44 -3.69 -0.02 1.69 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.46 6.44 -51.93 -0.33 0.13 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 30 H 0.06 0.85 7.02 -51.93 -0.36 0.49 16 31 H 0.05 0.52 5.58 -51.93 -0.29 0.23 16 32 H 0.06 0.87 7.26 -51.93 -0.38 0.49 16 33 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.08 0.91 5.68 -51.93 -0.30 0.62 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.54 6.91 -51.93 -0.36 1.18 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.08 1.33 7.01 -51.93 -0.36 0.96 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -30.33 351.83 -9.29 -39.62 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.14 Total: -0.61 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.72 Total: -15.71 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.22 Total: -35.34 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.33 -9.29 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584352869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.605 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds