Wall clock time and date at job start Tue Mar 31 2020 00:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46959 * 2 1 4 4 C 1.52997 * 115.55025 * 325.57564 * 3 2 1 5 5 C 1.52998 * 117.50037 * 111.25177 * 3 2 1 6 6 C 1.53001 * 60.00347 * 107.50977 * 5 3 2 7 7 H 1.09000 * 117.49758 * 252.51389 * 6 5 3 8 8 C 1.50692 * 117.50071 * 107.48771 * 6 5 3 9 9 O 1.21288 * 120.00011 * 291.38153 * 8 6 5 10 10 N 1.34777 * 120.00194 * 111.37615 * 8 6 5 11 11 C 1.46935 * 120.62729 * 359.72626 * 10 8 6 12 12 C 1.52761 * 109.00550 * 233.58145 * 11 10 8 13 13 C 1.53046 * 109.38166 * 305.58699 * 12 11 10 14 14 C 1.53002 * 109.45789 * 181.26123 * 13 12 11 15 15 C 1.50698 * 109.46955 * 64.93235 * 14 13 12 16 16 H 1.08008 * 120.00392 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00008 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99930 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47012 * 59.99901 * 19 17 15 21 21 H 1.48506 * 109.47133 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47376 * 299.99873 * 19 17 15 23 23 C 1.53039 * 109.53843 * 61.24320 * 13 12 11 24 24 C 1.46921 * 120.63434 * 179.97438 * 10 8 6 25 25 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47609 * 300.00256 * 1 2 3 27 27 H 1.09000 * 109.46406 * 60.00597 * 1 2 3 28 28 H 1.09000 * 109.47397 * 239.99407 * 2 1 3 29 29 H 1.09001 * 109.46916 * 119.99498 * 2 1 3 30 30 H 1.09002 * 109.47153 * 154.28077 * 4 3 2 31 31 H 1.09001 * 109.46832 * 34.28267 * 4 3 2 32 32 H 1.09004 * 109.47261 * 274.28249 * 4 3 2 33 33 H 1.08998 * 117.50041 * 215.00042 * 5 3 2 34 34 H 1.09003 * 117.49853 * 359.97438 * 5 3 2 35 35 H 1.08996 * 109.58279 * 353.41453 * 11 10 8 36 36 H 1.08998 * 109.58491 * 113.84039 * 11 10 8 37 37 H 1.08995 * 109.56306 * 185.55317 * 12 11 10 38 38 H 1.09002 * 109.36257 * 65.49800 * 12 11 10 39 39 H 1.09000 * 109.46069 * 301.21963 * 13 12 11 40 40 H 1.08997 * 109.46664 * 184.93157 * 14 13 12 41 41 H 1.09000 * 109.47436 * 304.93453 * 14 13 12 42 42 H 0.96995 * 120.00296 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.49735 * 178.68028 * 23 13 12 44 44 H 1.09000 * 109.52368 * 58.60072 * 23 13 12 45 45 H 1.08996 * 109.59152 * 246.15856 * 24 10 8 46 46 H 1.09003 * 109.58707 * 6.58469 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1864 2.4442 -0.7803 5 6 2.7392 1.9446 1.2648 6 6 3.5550 1.6567 0.0029 7 1 4.1886 0.7698 0.0047 8 6 4.0921 2.8380 -0.7631 9 8 3.3307 3.5763 -1.3515 10 7 5.4187 3.0743 -0.7943 11 6 6.3531 2.1924 -0.0815 12 6 7.2313 3.0380 0.8390 13 6 7.9071 4.1422 0.0227 14 6 8.8117 4.9709 0.9370 15 6 9.9352 4.1069 1.4491 16 1 9.9977 3.0703 1.1524 17 6 10.8829 4.6395 2.2972 18 7 10.8067 5.9016 2.6588 19 14 12.2752 3.5684 2.9324 20 1 13.0675 3.0551 1.7861 21 1 13.1533 4.3728 3.8198 22 1 11.7122 2.4260 3.6960 23 6 6.8397 5.0480 -0.5954 24 6 5.9575 4.2216 -1.5372 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3350 3.4438 -0.3720 31 1 0.1350 2.1695 -0.6952 32 1 1.4811 2.4328 -1.8297 33 1 2.5911 2.9886 1.5411 34 1 2.8356 1.2474 2.0971 35 1 5.7929 1.4702 0.5123 36 1 6.9816 1.6679 -0.8012 37 1 7.9924 2.4072 1.2980 38 1 6.6129 3.4869 1.6163 39 1 8.5057 3.6932 -0.7699 40 1 9.2246 5.8094 0.3763 41 1 8.2305 5.3476 1.7787 42 1 11.4736 6.2765 3.2551 43 1 7.3221 5.8478 -1.1572 44 1 6.2249 5.4784 0.1951 45 1 6.5532 3.8657 -2.3777 46 1 5.1364 4.8379 -1.9036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584352869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:29 Heat of formation + Delta-G solvation = -52.375662 kcal Electronic energy + Delta-G solvation = -22434.584526 eV Core-core repulsion = 19323.216621 eV Total energy + Delta-G solvation = -3111.367905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56095 -39.50508 -37.98635 -35.68443 -34.03876 -33.11625 -32.03510 -29.93378 -28.97195 -26.78086 -25.20088 -24.60653 -24.07343 -22.99342 -21.23077 -20.02856 -19.32273 -18.42935 -18.28047 -16.71884 -16.53780 -16.27584 -15.96409 -15.46119 -15.29924 -14.99094 -14.73185 -14.49169 -14.38321 -14.06921 -13.79457 -13.56241 -13.33139 -13.26098 -13.00793 -12.96726 -12.74232 -12.62963 -12.46972 -12.31022 -12.13427 -11.99569 -11.78031 -11.63993 -11.35905 -11.11872 -11.00437 -10.86249 -10.69932 -10.50829 -10.38265 -9.57871 -8.15901 -6.25887 1.42246 1.44738 1.51063 1.52222 2.00878 2.43380 2.81745 3.17737 3.45396 3.69394 3.83451 3.92277 4.01529 4.03639 4.13586 4.18410 4.22088 4.40734 4.47622 4.55924 4.57824 4.67382 4.77833 4.80714 4.86326 4.88619 4.90947 4.97616 5.00028 5.04906 5.10571 5.15146 5.23496 5.30852 5.32586 5.33797 5.40403 5.44408 5.54354 5.59606 5.64118 5.81513 5.89265 6.28742 6.47463 6.90888 7.20604 7.43046 8.96044 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.003485 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.649243 B = 8032.968345 C = 8590.812232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.102 4.102 5 C -0.140 4.140 6 C -0.195 4.195 7 H 0.146 0.854 8 C 0.536 3.464 9 O -0.577 6.577 10 N -0.606 5.606 11 C 0.113 3.887 12 C -0.113 4.113 13 C -0.073 4.073 14 C 0.033 3.967 15 C -0.527 4.527 16 H 0.069 0.931 17 C -0.004 4.004 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.263 1.263 23 C -0.121 4.121 24 C 0.119 3.881 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.063 0.937 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.261 0.739 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.238 -14.098 -5.305 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C -0.090 4.090 4 C -0.159 4.159 5 C -0.178 4.178 6 C -0.216 4.216 7 H 0.163 0.837 8 C 0.326 3.674 9 O -0.458 6.458 10 N -0.338 5.338 11 C -0.009 4.009 12 C -0.151 4.151 13 C -0.091 4.091 14 C -0.004 4.004 15 C -0.565 4.565 16 H 0.087 0.913 17 C -0.201 4.201 18 N -0.580 5.580 19 Si 0.786 3.214 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.188 1.188 23 C -0.159 4.159 24 C -0.003 4.003 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.003 0.997 41 H 0.001 0.999 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.537 -13.585 -5.524 22.861 hybrid contribution 1.322 0.589 0.535 1.543 sum -16.215 -12.995 -4.989 21.371 Atomic orbital electron populations 1.21824 0.94743 1.02205 1.02055 1.21116 0.96689 0.91315 1.02943 1.21700 0.90024 0.97988 0.99266 1.21359 0.98780 0.96601 0.99191 1.23258 1.00767 1.02592 0.91135 1.22437 0.96637 0.98836 1.03642 0.83660 1.20253 0.81374 0.85721 0.80061 1.90649 1.57054 1.50676 1.47402 1.48227 1.06155 1.28602 1.50834 1.21870 0.91623 0.92081 0.95338 1.21701 0.98319 0.97571 0.97492 1.21038 0.94928 0.95822 0.97355 1.19010 0.93639 0.94412 0.93327 1.21644 1.09803 0.97562 1.27510 0.91329 1.25993 1.00998 0.96217 0.96935 1.70110 1.36874 1.14758 1.36226 0.85554 0.78743 0.78680 0.78404 1.19171 1.21565 1.18799 1.21907 0.97041 0.98334 0.98641 1.21533 0.97269 0.87561 0.93964 0.91497 0.92512 0.92509 0.91195 0.90145 0.94292 0.90828 0.93478 0.90116 0.85361 0.87391 0.89941 0.90436 0.93802 0.91867 0.99749 0.99865 0.93052 0.91179 0.93826 0.90211 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.92 71.98 0.64 -1.17 16 2 C -0.08 -1.12 6.12 30.60 0.19 -0.94 16 3 C -0.09 -1.70 2.47 -52.18 -0.13 -1.83 16 4 C -0.10 -2.35 7.74 71.98 0.56 -1.79 16 5 C -0.14 -2.68 9.52 30.59 0.29 -2.39 16 6 C -0.19 -4.12 4.68 -11.54 -0.05 -4.17 16 7 H 0.15 2.35 6.83 -2.39 -0.02 2.33 16 8 C 0.54 15.47 7.46 87.65 0.65 16.13 16 9 O -0.58 -20.11 12.52 -3.05 -0.04 -20.15 16 10 N -0.61 -17.16 2.98 -819.65 -2.44 -19.60 16 11 C 0.11 2.80 6.27 86.22 0.54 3.34 16 12 C -0.11 -3.76 5.17 30.53 0.16 -3.61 16 13 C -0.07 -2.83 2.10 -10.76 -0.02 -2.85 16 14 C 0.03 1.71 4.45 29.85 0.13 1.84 16 15 C -0.53 -28.68 8.39 25.60 0.21 -28.46 16 16 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -57.19 13.29 21.45 0.28 -56.91 16 19 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 C -0.12 -4.20 5.36 30.69 0.16 -4.04 16 24 C 0.12 3.56 6.44 86.38 0.56 4.11 16 25 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.73 6.44 -2.39 -0.02 0.72 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.87 7.90 -2.39 -0.02 0.85 16 30 H 0.04 1.06 7.02 -2.39 -0.02 1.05 16 31 H 0.07 1.35 5.58 -2.39 -0.01 1.34 16 32 H 0.05 1.24 7.26 -2.38 -0.02 1.23 16 33 H 0.08 1.85 8.05 -2.39 -0.02 1.83 16 34 H 0.13 1.80 8.05 -2.39 -0.02 1.78 16 35 H 0.11 2.09 5.68 -2.39 -0.01 2.08 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.71 6.91 -2.39 -0.02 2.69 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.08 2.47 7.01 -2.39 -0.02 2.45 16 Total: -1.00 -67.54 351.83 5.12 -62.42 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.93 Total: 14.58 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: 4.36 Total: -25.60 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.16 Total: -76.51 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.04 Total: -20.15 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -67.54 5.12 -62.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584352869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.041 kcal (2) G-P(sol) polarization free energy of solvation -67.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds