Wall clock time and date at job start Tue Mar 31 2020 00:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47345 * 2 1 4 4 C 1.52997 * 115.54950 * 34.41103 * 3 2 1 5 5 C 1.52999 * 117.51269 * 248.71174 * 3 2 1 6 6 C 1.52994 * 117.49816 * 180.08442 * 3 2 1 7 7 H 1.09000 * 117.49792 * 214.99589 * 6 3 2 8 8 C 1.50704 * 117.50233 * 359.97438 * 6 3 2 9 9 O 1.21281 * 119.99947 * 0.02562 * 8 6 3 10 10 N 1.34777 * 120.00226 * 179.97438 * 8 6 3 11 11 C 1.46927 * 120.63020 * 359.72409 * 10 8 6 12 12 C 1.52760 * 109.00655 * 233.58010 * 11 10 8 13 13 C 1.53036 * 109.38590 * 305.58640 * 12 11 10 14 14 C 1.52991 * 109.46181 * 181.25811 * 13 12 11 15 15 C 1.50704 * 109.46831 * 64.93619 * 14 13 12 16 16 H 1.07997 * 119.99976 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99702 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00155 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99787 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46828 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46827 * 119.99769 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00167 * 19 17 15 23 23 C 1.53046 * 109.53507 * 61.23604 * 13 12 11 24 24 C 1.46918 * 120.63001 * 179.97438 * 10 8 6 25 25 H 1.09003 * 109.46769 * 60.00378 * 1 2 3 26 26 H 1.09005 * 109.47491 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47401 * 300.00352 * 1 2 3 28 28 H 1.08999 * 109.47401 * 239.99648 * 2 1 3 29 29 H 1.09003 * 109.46769 * 119.99622 * 2 1 3 30 30 H 1.09002 * 109.47153 * 205.67229 * 4 3 2 31 31 H 1.09001 * 109.46832 * 85.67420 * 4 3 2 32 32 H 1.09004 * 109.47261 * 325.67402 * 4 3 2 33 33 H 1.08994 * 117.50345 * 0.02562 * 5 3 2 34 34 H 1.09008 * 117.49719 * 145.02779 * 5 3 2 35 35 H 1.09002 * 109.58375 * 353.41467 * 11 10 8 36 36 H 1.08998 * 109.58705 * 113.83585 * 11 10 8 37 37 H 1.09003 * 109.56251 * 185.54829 * 12 11 10 38 38 H 1.09005 * 109.36092 * 65.49951 * 12 11 10 39 39 H 1.08997 * 109.44728 * 301.22834 * 13 12 11 40 40 H 1.09000 * 109.47278 * 184.92950 * 14 13 12 41 41 H 1.08998 * 109.47380 * 304.93536 * 14 13 12 42 42 H 0.97001 * 120.00110 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.49501 * 178.68111 * 23 13 12 44 44 H 1.09004 * 109.52119 * 58.61136 * 23 13 12 45 45 H 1.08997 * 109.59223 * 246.16132 * 24 10 8 46 46 H 1.08998 * 109.59294 * 6.58577 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1863 2.4443 0.7801 5 6 2.7401 1.9446 -1.2644 6 6 3.5550 1.6561 -0.0020 7 1 3.9435 2.5104 0.5524 8 6 4.4307 0.4296 -0.0032 9 8 3.9282 -0.6742 -0.0031 10 7 5.7722 0.5594 -0.0055 11 6 6.3956 1.8898 -0.0129 12 6 7.3817 1.9707 -1.1768 13 6 8.3757 0.8110 -1.0818 14 6 9.3834 0.9082 -2.2289 15 6 10.2099 2.1580 -2.0669 16 1 10.0336 2.8171 -1.2298 17 6 11.1903 2.4603 -2.9881 18 7 11.4045 1.6578 -4.0078 19 14 12.2142 4.0098 -2.7878 20 1 11.7786 4.7367 -1.5682 21 1 13.6476 3.6429 -2.6605 22 1 12.0300 4.8819 -3.9755 23 6 7.6224 -0.5178 -1.1761 24 6 6.6390 -0.6269 -0.0062 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.3357 3.4441 0.3723 31 1 1.4803 2.4324 1.8296 32 1 0.1348 2.1701 0.6941 33 1 2.8370 1.2475 -2.0966 34 1 2.5925 2.9888 -1.5405 35 1 5.6266 2.6529 -0.1336 36 1 6.9275 2.0493 0.9249 37 1 7.9212 2.9169 -1.1330 38 1 6.8359 1.9059 -2.1181 39 1 8.9034 0.8624 -0.1295 40 1 10.0370 0.0360 -2.2133 41 1 8.8502 0.9458 -3.1788 42 1 12.0945 1.8703 -4.6556 43 1 8.3332 -1.3429 -1.1320 44 1 7.0744 -0.5599 -2.1175 45 1 7.1912 -0.6765 0.9322 46 1 6.0308 -1.5239 -0.1223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584352870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:34 Heat of formation + Delta-G solvation = -37.058107 kcal Electronic energy + Delta-G solvation = -22483.777758 eV Core-core repulsion = 19373.074073 eV Total energy + Delta-G solvation = -3110.703686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.46807 -38.35655 -36.74195 -34.00882 -32.48614 -31.94312 -30.78877 -28.50315 -28.01773 -25.21075 -23.85900 -23.68205 -22.72159 -21.50340 -19.88532 -19.01423 -18.22685 -17.15005 -16.30321 -15.67866 -15.14155 -14.77242 -14.58425 -14.37914 -14.27335 -13.67535 -13.45285 -13.36025 -13.04496 -12.89730 -12.74959 -12.28936 -12.22650 -11.93368 -11.84578 -11.79214 -11.25997 -11.18276 -11.00210 -10.97052 -10.78458 -10.71270 -10.46078 -10.18327 -10.09194 -9.85638 -9.63938 -9.34028 -9.23410 -8.96890 -8.37773 -8.30830 -6.01651 -4.03693 2.61136 3.12974 3.28500 3.36535 3.39219 3.71480 4.43505 4.44011 4.53111 4.70045 4.87844 4.97769 5.17518 5.25743 5.33541 5.34866 5.43180 5.47753 5.49904 5.53374 5.58960 5.62704 5.64058 5.70607 5.79217 5.81597 5.88813 5.99678 6.00511 6.08310 6.12012 6.25365 6.37943 6.40677 6.49544 6.53409 6.70757 6.96492 6.99243 7.10250 7.62385 7.65756 7.80246 7.98220 8.35895 8.40535 9.03081 9.60211 11.09647 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030659 B = 0.003492 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.050264 B = 8016.921286 C = 8473.766255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.075 4.075 3 C -0.092 4.092 4 C -0.123 4.123 5 C -0.145 4.145 6 C -0.187 4.187 7 H 0.122 0.878 8 C 0.543 3.457 9 O -0.547 6.547 10 N -0.602 5.602 11 C 0.104 3.896 12 C -0.119 4.119 13 C -0.081 4.081 14 C 0.027 3.973 15 C -0.515 4.515 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.129 4.129 24 C 0.112 3.888 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.489 0.730 8.999 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.093 4.093 4 C -0.179 4.179 5 C -0.182 4.182 6 C -0.208 4.208 7 H 0.139 0.861 8 C 0.332 3.668 9 O -0.426 6.426 10 N -0.334 5.334 11 C -0.019 4.019 12 C -0.157 4.157 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.167 4.167 24 C -0.010 4.010 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.624 0.123 8.854 20.623 hybrid contribution 1.023 1.034 -0.060 1.456 sum -17.601 1.156 8.795 19.710 Atomic orbital electron populations 1.21939 0.96690 1.01225 1.01350 1.21067 0.93857 0.92454 1.03823 1.21588 0.90588 0.97562 0.99548 1.21510 0.99832 0.97112 0.99488 1.23188 1.01435 1.02499 0.91102 1.22377 0.93643 0.99190 1.05559 0.86060 1.19635 0.81965 0.89529 0.75718 1.90651 1.73349 1.27480 1.51110 1.48117 1.05094 1.08038 1.72162 1.21860 0.96807 0.83086 1.00097 1.21818 0.96213 1.01101 0.96536 1.21186 0.95745 0.91576 1.01405 1.19127 0.92672 0.96945 0.92232 1.21274 1.17250 1.07485 1.09368 0.92552 1.25030 0.97372 0.96720 0.95390 1.69973 1.32999 1.37123 1.13363 0.86594 0.80262 0.83498 0.77982 1.19752 1.21087 1.21097 1.22029 0.97579 0.99658 0.97442 1.21660 0.92298 0.88036 0.98974 0.92994 0.92988 0.92661 0.90987 0.90893 0.92418 0.92180 0.90968 0.88321 0.87933 0.90329 0.91748 0.89726 0.92315 0.92392 0.96612 0.96653 0.93096 0.91191 0.92146 0.91939 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.92 37.15 0.33 -1.07 16 2 C -0.07 -0.87 4.36 -26.73 -0.12 -0.99 16 3 C -0.09 -0.97 2.47 -154.51 -0.38 -1.35 16 4 C -0.12 -1.00 9.49 37.16 0.35 -0.65 16 5 C -0.14 -1.54 9.53 -26.73 -0.25 -1.79 16 6 C -0.19 -2.19 4.67 -91.77 -0.43 -2.62 16 7 H 0.12 1.24 6.83 -51.93 -0.35 0.88 16 8 C 0.54 8.11 7.46 -10.98 -0.08 8.03 16 9 O -0.55 -9.43 12.52 5.56 0.07 -9.36 16 10 N -0.60 -8.95 2.98 -173.02 -0.52 -9.46 16 11 C 0.10 1.43 6.27 -3.93 -0.02 1.41 16 12 C -0.12 -2.04 5.17 -26.84 -0.14 -2.18 16 13 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 14 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 15 C -0.52 -13.91 8.39 -34.44 -0.29 -14.19 16 16 H 0.06 1.46 7.05 -52.49 -0.37 1.09 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.13 -2.20 5.36 -26.59 -0.14 -2.34 16 24 C 0.11 1.71 6.44 -3.70 -0.02 1.69 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.44 6.44 -51.93 -0.33 0.11 16 28 H 0.07 0.97 7.01 -51.93 -0.36 0.61 16 29 H 0.07 0.97 7.26 -51.93 -0.38 0.60 16 30 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.53 5.58 -51.93 -0.29 0.24 16 33 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.10 0.90 8.05 -51.92 -0.42 0.48 16 35 H 0.08 0.91 5.68 -51.93 -0.30 0.62 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.54 6.91 -51.93 -0.36 1.18 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.08 1.32 7.00 -51.93 -0.36 0.96 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -30.28 351.84 -9.18 -39.46 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -8.14 Total: -0.48 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.61 Total: -15.79 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.22 Total: -35.27 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.07 Total: -9.36 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.28 -9.18 -39.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584352870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.402 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds