Wall clock time and date at job start Tue Mar 31 2020 00:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47345 * 2 1 4 4 C 1.52997 * 115.54950 * 34.41103 * 3 2 1 5 5 C 1.52999 * 117.51269 * 248.71174 * 3 2 1 6 6 C 1.52994 * 117.49816 * 180.08442 * 3 2 1 7 7 H 1.09000 * 117.49792 * 214.99589 * 6 3 2 8 8 C 1.50704 * 117.50233 * 359.97438 * 6 3 2 9 9 O 1.21281 * 119.99947 * 0.02562 * 8 6 3 10 10 N 1.34777 * 120.00226 * 179.97438 * 8 6 3 11 11 C 1.46927 * 120.63020 * 359.72409 * 10 8 6 12 12 C 1.52760 * 109.00655 * 233.58010 * 11 10 8 13 13 C 1.53036 * 109.38590 * 305.58640 * 12 11 10 14 14 C 1.52991 * 109.46181 * 181.25811 * 13 12 11 15 15 C 1.50704 * 109.46831 * 64.93619 * 14 13 12 16 16 H 1.07997 * 119.99976 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99702 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00155 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99787 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46828 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46827 * 119.99769 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00167 * 19 17 15 23 23 C 1.53046 * 109.53507 * 61.23604 * 13 12 11 24 24 C 1.46918 * 120.63001 * 179.97438 * 10 8 6 25 25 H 1.09003 * 109.46769 * 60.00378 * 1 2 3 26 26 H 1.09005 * 109.47491 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47401 * 300.00352 * 1 2 3 28 28 H 1.08999 * 109.47401 * 239.99648 * 2 1 3 29 29 H 1.09003 * 109.46769 * 119.99622 * 2 1 3 30 30 H 1.09002 * 109.47153 * 205.67229 * 4 3 2 31 31 H 1.09001 * 109.46832 * 85.67420 * 4 3 2 32 32 H 1.09004 * 109.47261 * 325.67402 * 4 3 2 33 33 H 1.08994 * 117.50345 * 0.02562 * 5 3 2 34 34 H 1.09008 * 117.49719 * 145.02779 * 5 3 2 35 35 H 1.09002 * 109.58375 * 353.41467 * 11 10 8 36 36 H 1.08998 * 109.58705 * 113.83585 * 11 10 8 37 37 H 1.09003 * 109.56251 * 185.54829 * 12 11 10 38 38 H 1.09005 * 109.36092 * 65.49951 * 12 11 10 39 39 H 1.08997 * 109.44728 * 301.22834 * 13 12 11 40 40 H 1.09000 * 109.47278 * 184.92950 * 14 13 12 41 41 H 1.08998 * 109.47380 * 304.93536 * 14 13 12 42 42 H 0.97001 * 120.00110 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.49501 * 178.68111 * 23 13 12 44 44 H 1.09004 * 109.52119 * 58.61136 * 23 13 12 45 45 H 1.08997 * 109.59223 * 246.16132 * 24 10 8 46 46 H 1.08998 * 109.59294 * 6.58577 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1863 2.4443 0.7801 5 6 2.7401 1.9446 -1.2644 6 6 3.5550 1.6561 -0.0020 7 1 3.9435 2.5104 0.5524 8 6 4.4307 0.4296 -0.0032 9 8 3.9282 -0.6742 -0.0031 10 7 5.7722 0.5594 -0.0055 11 6 6.3956 1.8898 -0.0129 12 6 7.3817 1.9707 -1.1768 13 6 8.3757 0.8110 -1.0818 14 6 9.3834 0.9082 -2.2289 15 6 10.2099 2.1580 -2.0669 16 1 10.0336 2.8171 -1.2298 17 6 11.1903 2.4603 -2.9881 18 7 11.4045 1.6578 -4.0078 19 14 12.2142 4.0098 -2.7878 20 1 11.7786 4.7367 -1.5682 21 1 13.6476 3.6429 -2.6605 22 1 12.0300 4.8819 -3.9755 23 6 7.6224 -0.5178 -1.1761 24 6 6.6390 -0.6269 -0.0062 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.3357 3.4441 0.3723 31 1 1.4803 2.4324 1.8296 32 1 0.1348 2.1701 0.6941 33 1 2.8370 1.2475 -2.0966 34 1 2.5925 2.9888 -1.5405 35 1 5.6266 2.6529 -0.1336 36 1 6.9275 2.0493 0.9249 37 1 7.9212 2.9169 -1.1330 38 1 6.8359 1.9059 -2.1181 39 1 8.9034 0.8624 -0.1295 40 1 10.0370 0.0360 -2.2133 41 1 8.8502 0.9458 -3.1788 42 1 12.0945 1.8703 -4.6556 43 1 8.3332 -1.3429 -1.1320 44 1 7.0744 -0.5599 -2.1175 45 1 7.1912 -0.6765 0.9322 46 1 6.0308 -1.5239 -0.1223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584352870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:33 Heat of formation + Delta-G solvation = -52.469365 kcal Electronic energy + Delta-G solvation = -22484.446041 eV Core-core repulsion = 19373.074073 eV Total energy + Delta-G solvation = -3111.371968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56840 -39.50918 -37.94798 -35.68909 -34.06465 -33.09558 -32.07129 -29.89739 -29.07559 -26.72714 -25.05774 -24.66602 -24.07599 -22.99248 -21.25189 -20.11958 -19.30464 -18.43494 -18.24169 -16.78970 -16.52811 -16.25219 -15.72173 -15.45105 -15.31772 -15.00737 -14.85983 -14.43026 -14.28041 -14.14804 -13.96046 -13.82745 -13.38806 -13.10068 -12.97697 -12.77288 -12.67781 -12.56748 -12.50246 -12.29595 -12.14475 -12.01875 -11.80351 -11.73891 -11.36504 -11.11287 -10.99078 -10.85249 -10.68593 -10.52327 -10.37281 -9.57924 -8.16300 -6.26020 1.41543 1.42337 1.51045 1.54753 2.01213 2.43058 2.82174 3.17600 3.47053 3.68012 3.85585 3.92935 4.01052 4.03463 4.14017 4.19576 4.22181 4.40303 4.47805 4.55983 4.62241 4.66867 4.74651 4.81264 4.81948 4.88423 4.89740 4.97237 4.99576 5.06476 5.10912 5.15911 5.27205 5.30289 5.32079 5.32553 5.40219 5.43705 5.54667 5.61788 5.65010 5.81379 5.89241 6.28682 6.47354 6.91096 7.20344 7.42955 8.96013 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030659 B = 0.003492 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.050264 B = 8016.921286 C = 8473.766255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.089 4.089 4 C -0.119 4.119 5 C -0.141 4.141 6 C -0.196 4.196 7 H 0.146 0.854 8 C 0.535 3.465 9 O -0.577 6.577 10 N -0.606 5.606 11 C 0.113 3.887 12 C -0.113 4.113 13 C -0.073 4.073 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.069 0.931 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.256 1.256 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.121 4.121 24 C 0.119 3.881 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.063 0.937 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.261 0.739 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.791 3.252 10.885 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.090 4.090 4 C -0.175 4.175 5 C -0.178 4.178 6 C -0.216 4.216 7 H 0.163 0.837 8 C 0.326 3.674 9 O -0.458 6.458 10 N -0.338 5.338 11 C -0.009 4.009 12 C -0.151 4.151 13 C -0.092 4.092 14 C -0.005 4.005 15 C -0.563 4.563 16 H 0.087 0.913 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.786 3.214 20 H -0.179 1.179 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.159 4.159 24 C -0.003 4.003 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.938 2.656 10.758 22.810 hybrid contribution 1.436 0.147 -0.704 1.606 sum -18.502 2.803 10.053 21.243 Atomic orbital electron populations 1.21896 0.94570 1.01644 1.02501 1.20962 0.95700 0.93075 1.01358 1.21709 0.90132 0.97366 0.99758 1.21532 0.99730 0.96973 0.99297 1.23258 1.00731 1.03505 0.90290 1.22453 0.93878 0.98388 1.06929 0.83675 1.20269 0.82073 0.90305 0.74781 1.90645 1.73815 1.29033 1.52299 1.48223 1.05284 1.08209 1.72096 1.21867 0.96804 0.83219 0.99017 1.21700 0.96245 0.99457 0.97673 1.21037 0.95295 0.93858 0.98969 1.19021 0.93136 0.95250 0.93066 1.21695 1.17130 1.08000 1.09426 0.91327 1.25994 0.98916 1.00222 0.95068 1.70123 1.33964 1.39378 1.14502 0.85450 0.78159 0.79251 0.78507 1.17911 1.20966 1.20823 1.21907 0.97721 0.98544 0.97751 1.21529 0.91847 0.88417 0.98534 0.92176 0.93071 0.91037 0.93821 0.93076 0.90860 0.91764 0.90019 0.90206 0.85315 0.87396 0.89963 0.90432 0.93796 0.91863 0.99716 0.99837 0.93071 0.91175 0.93835 0.90216 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.92 71.98 0.64 -1.83 16 2 C -0.07 -1.68 4.36 30.59 0.13 -1.55 16 3 C -0.09 -1.69 2.47 -52.18 -0.13 -1.82 16 4 C -0.12 -1.52 9.49 71.98 0.68 -0.83 16 5 C -0.14 -2.69 9.53 30.59 0.29 -2.40 16 6 C -0.20 -4.14 4.67 -11.54 -0.05 -4.20 16 7 H 0.15 2.36 6.83 -2.39 -0.02 2.35 16 8 C 0.54 15.49 7.46 87.66 0.65 16.15 16 9 O -0.58 -20.14 12.52 -3.03 -0.04 -20.18 16 10 N -0.61 -17.19 2.98 -819.69 -2.44 -19.63 16 11 C 0.11 2.81 6.27 86.22 0.54 3.35 16 12 C -0.11 -3.77 5.17 30.53 0.16 -3.61 16 13 C -0.07 -2.83 2.10 -10.77 -0.02 -2.86 16 14 C 0.03 1.67 4.45 29.85 0.13 1.80 16 15 C -0.52 -28.51 8.39 25.60 0.21 -28.30 16 16 H 0.07 3.49 7.05 -2.91 -0.02 3.47 16 17 C -0.01 -0.29 5.46 84.66 0.46 0.18 16 18 N -0.94 -57.12 13.29 21.45 0.28 -56.84 16 19 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 C -0.12 -4.21 5.36 30.69 0.16 -4.04 16 24 C 0.12 3.56 6.44 86.38 0.56 4.12 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.07 0.96 6.44 -2.39 -0.02 0.95 16 28 H 0.04 1.22 7.01 -2.39 -0.02 1.21 16 29 H 0.05 1.38 7.26 -2.39 -0.02 1.36 16 30 H 0.07 0.74 7.90 -2.39 -0.02 0.72 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.90 5.58 -2.38 -0.01 0.89 16 33 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 34 H 0.13 1.79 8.05 -2.38 -0.02 1.77 16 35 H 0.11 2.10 5.68 -2.39 -0.01 2.08 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.71 6.91 -2.39 -0.02 2.69 16 38 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 40 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.08 2.47 7.00 -2.39 -0.02 2.45 16 Total: -1.00 -67.74 351.84 5.19 -62.55 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.93 Total: 14.63 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 4.43 Total: -25.85 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -2.16 Total: -76.47 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.04 Total: -20.18 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -67.74 5.19 -62.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584352870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.078 kcal (2) G-P(sol) polarization free energy of solvation -67.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds