Wall clock time and date at job start Tue Mar 31 2020 00:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46974 * 2 1 4 4 C 1.52994 * 115.54794 * 325.66611 * 3 2 1 5 5 C 1.52998 * 117.51976 * 111.36869 * 3 2 1 6 6 C 1.52999 * 117.49861 * 180.02562 * 3 2 1 7 7 H 1.08994 * 117.50001 * 144.97032 * 6 3 2 8 8 C 1.50701 * 117.49821 * 359.97213 * 6 3 2 9 9 O 1.21280 * 119.99885 * 359.97438 * 8 6 3 10 10 N 1.34773 * 119.99878 * 180.02562 * 8 6 3 11 11 C 1.46933 * 120.62856 * 180.02562 * 10 8 6 12 12 C 1.53189 * 108.77340 * 233.62813 * 11 10 8 13 13 C 1.53041 * 109.31571 * 305.36385 * 12 11 10 14 14 C 1.53002 * 109.46435 * 181.38350 * 13 12 11 15 15 C 1.50696 * 109.46997 * 174.97087 * 14 13 12 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.53041 * 109.52335 * 61.37193 * 13 12 11 24 24 C 1.46924 * 120.63150 * 0.02562 * 10 8 6 25 25 H 1.08998 * 109.47189 * 60.00098 * 1 2 3 26 26 H 1.08999 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47239 * 300.00155 * 1 2 3 28 28 H 1.08995 * 109.47038 * 239.99935 * 2 1 3 29 29 H 1.08998 * 109.46821 * 119.99504 * 2 1 3 30 30 H 1.09000 * 109.47777 * 274.33478 * 4 3 2 31 31 H 1.09003 * 109.47676 * 34.33420 * 4 3 2 32 32 H 1.09002 * 109.46948 * 154.33138 * 4 3 2 33 33 H 1.09000 * 117.49480 * 359.97438 * 5 3 2 34 34 H 1.08995 * 117.49776 * 214.97150 * 5 3 2 35 35 H 1.08999 * 109.58639 * 113.84080 * 11 10 8 36 36 H 1.08993 * 109.70176 * 353.48460 * 11 10 8 37 37 H 1.08997 * 109.49968 * 185.41570 * 12 11 10 38 38 H 1.09000 * 109.52598 * 65.33251 * 12 11 10 39 39 H 1.09002 * 109.46014 * 301.36321 * 13 12 11 40 40 H 1.09005 * 109.46767 * 54.97438 * 14 13 12 41 41 H 1.09002 * 109.47113 * 294.97778 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.49763 * 58.58334 * 23 13 12 44 44 H 1.09005 * 109.50041 * 178.67949 * 23 13 12 45 45 H 1.09004 * 109.58742 * 246.15863 * 24 10 8 46 46 H 1.08990 * 109.58687 * 6.44267 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4445 -0.7785 5 6 2.7417 1.9443 1.2636 6 6 3.5550 1.6562 -0.0006 7 1 3.9425 2.5105 -0.5556 8 6 4.4307 0.4298 -0.0005 9 8 3.9282 -0.6741 0.0005 10 7 5.7721 0.5596 -0.0005 11 6 6.6390 -0.6267 -0.0010 12 6 7.6244 -0.5178 1.1669 13 6 8.3776 0.8111 1.0714 14 6 9.3873 0.9082 2.2168 15 6 10.2138 2.1576 2.0532 16 1 10.0364 2.8167 1.2162 17 6 11.1966 2.4593 2.9721 18 7 11.9176 3.5500 2.8296 19 14 11.5038 1.3189 4.4193 20 1 10.6536 1.7322 5.5645 21 1 11.1684 -0.0747 4.0313 22 1 12.9339 1.3927 4.8126 23 6 7.3834 1.9705 1.1684 24 6 6.3955 1.8901 0.0000 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4776 2.4331 -1.8285 31 1 0.1339 2.1704 -0.6913 32 1 1.3351 3.4441 -0.3705 33 1 2.8398 1.2467 2.0954 34 1 2.5944 2.9882 1.5402 35 1 7.1897 -0.6765 -0.9403 36 1 6.0327 -1.5250 0.1151 37 1 8.3352 -1.3428 1.1213 38 1 7.0784 -0.5596 2.1093 39 1 8.9036 0.8626 0.1181 40 1 10.0405 0.0357 2.2003 41 1 8.8556 0.9461 3.1676 42 1 12.6087 3.7624 3.4762 43 1 6.8393 1.9053 2.1106 44 1 7.9226 2.9168 1.1240 45 1 6.9264 2.0452 -0.9393 46 1 5.6265 2.6538 0.1155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584352871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:37 Heat of formation + Delta-G solvation = -49.478812 kcal Electronic energy + Delta-G solvation = -22522.295017 eV Core-core repulsion = 19411.052729 eV Total energy + Delta-G solvation = -3111.242288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57098 -39.51965 -37.95804 -35.67828 -34.13265 -33.12245 -32.05734 -30.33682 -29.10314 -26.71146 -24.95804 -24.66689 -24.05592 -22.78434 -21.22066 -20.14882 -19.32358 -18.85395 -18.24336 -16.79439 -16.39279 -16.24043 -15.72579 -15.48882 -15.33840 -15.06157 -14.91460 -14.61202 -14.30217 -14.14625 -13.97304 -13.93777 -13.52853 -13.14741 -13.02806 -12.86889 -12.71986 -12.56315 -12.39996 -12.18232 -12.03262 -11.97396 -11.80709 -11.72754 -11.40634 -11.16686 -11.00374 -10.94217 -10.73947 -10.66911 -10.37443 -9.59022 -8.25894 -6.27199 1.34865 1.37042 1.47830 1.50663 2.00547 2.37172 2.81552 3.09778 3.46218 3.67341 3.85060 3.91820 3.99002 4.00238 4.12257 4.17792 4.21557 4.39263 4.47421 4.54444 4.61203 4.64328 4.74606 4.80653 4.80937 4.86538 4.88863 4.95046 4.98528 5.05796 5.09962 5.15040 5.15654 5.22591 5.27054 5.31451 5.36031 5.41549 5.44487 5.61693 5.64512 5.71814 5.73859 6.33886 6.45830 6.80135 7.19816 7.36684 8.90263 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.031108 B = 0.003558 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.885391 B = 7866.678749 C = 8128.200827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.089 4.089 4 C -0.120 4.120 5 C -0.139 4.139 6 C -0.198 4.198 7 H 0.142 0.858 8 C 0.537 3.463 9 O -0.575 6.575 10 N -0.606 5.606 11 C 0.116 3.884 12 C -0.122 4.122 13 C -0.069 4.069 14 C -0.007 4.007 15 C -0.515 4.515 16 H 0.043 0.957 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.251 1.251 22 H -0.287 1.287 23 C -0.114 4.114 24 C 0.113 3.887 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.014 0.986 41 H 0.010 0.990 42 H 0.264 0.736 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.653 -3.814 -6.570 22.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.090 4.090 4 C -0.176 4.176 5 C -0.176 4.176 6 C -0.219 4.219 7 H 0.160 0.840 8 C 0.327 3.673 9 O -0.456 6.456 10 N -0.338 5.338 11 C -0.006 4.006 12 C -0.160 4.160 13 C -0.088 4.088 14 C -0.044 4.044 15 C -0.553 4.553 16 H 0.062 0.938 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.174 1.174 22 H -0.213 1.213 23 C -0.153 4.153 24 C -0.009 4.009 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.763 -4.306 -6.504 23.118 hybrid contribution 1.225 -0.221 0.861 1.514 sum -20.537 -4.528 -5.643 21.774 Atomic orbital electron populations 1.21899 0.94621 1.01661 1.02471 1.20959 0.95655 0.92969 1.01429 1.21705 0.90061 0.97411 0.99799 1.21535 0.99791 0.97002 0.99295 1.23264 1.00596 1.03488 0.90280 1.22462 0.93978 0.98448 1.06990 0.84028 1.20209 0.82054 0.90227 0.74788 1.90645 1.73775 1.28907 1.52262 1.48211 1.05289 1.08127 1.72144 1.21555 0.91954 0.88368 0.98734 1.21931 0.97818 0.98141 0.98083 1.20923 0.95061 0.94096 0.98735 1.19580 0.94473 0.95222 0.95170 1.21449 1.16577 1.07332 1.09907 0.93844 1.25910 0.95741 0.96552 1.00964 1.70054 1.23713 1.27263 1.38199 0.85795 0.77197 0.80729 0.79735 1.19598 1.17436 1.21303 1.21781 0.96257 0.99296 0.97915 1.21908 0.96745 0.83369 0.98863 0.91156 0.93010 0.92153 0.93089 0.93607 0.91871 0.89970 0.90970 0.89891 0.85497 0.90577 0.90008 0.90265 0.92812 0.92270 0.96723 0.97154 0.92739 0.92882 0.91513 0.90552 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.92 71.98 0.64 -1.76 16 2 C -0.07 -1.61 4.36 30.60 0.13 -1.48 16 3 C -0.09 -1.67 2.46 -52.18 -0.13 -1.80 16 4 C -0.12 -1.55 9.49 71.98 0.68 -0.86 16 5 C -0.14 -2.59 9.53 30.61 0.29 -2.29 16 6 C -0.20 -4.15 4.68 -11.52 -0.05 -4.20 16 7 H 0.14 2.38 6.82 -2.39 -0.02 2.37 16 8 C 0.54 15.04 7.46 87.66 0.65 15.69 16 9 O -0.58 -19.29 12.52 -3.03 -0.04 -19.33 16 10 N -0.61 -16.58 2.97 -818.86 -2.43 -19.01 16 11 C 0.12 3.23 6.43 86.36 0.56 3.79 16 12 C -0.12 -3.73 5.36 30.67 0.16 -3.56 16 13 C -0.07 -2.53 2.10 -10.77 -0.02 -2.55 16 14 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 15 C -0.51 -28.41 8.94 25.60 0.23 -28.18 16 16 H 0.04 2.59 7.30 -2.91 -0.02 2.57 16 17 C 0.00 0.27 5.47 84.66 0.46 0.74 16 18 N -0.95 -58.71 13.96 21.45 0.30 -58.42 16 19 Si 0.94 44.19 27.47 68.60 1.88 46.08 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 C -0.11 -3.78 5.19 30.68 0.16 -3.62 16 24 C 0.11 2.86 6.30 86.37 0.54 3.41 16 25 H 0.07 0.93 6.45 -2.39 -0.02 0.91 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.34 7.26 -2.39 -0.02 1.32 16 29 H 0.05 1.23 7.02 -2.39 -0.02 1.21 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.91 5.58 -2.39 -0.01 0.89 16 32 H 0.07 0.75 7.90 -2.39 -0.02 0.73 16 33 H 0.08 1.81 8.05 -2.39 -0.02 1.79 16 34 H 0.13 1.75 8.05 -2.39 -0.02 1.73 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.37 7.01 -2.39 -0.02 2.35 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.01 0.66 7.20 -2.38 -0.02 0.64 16 41 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.51 6.91 -2.38 -0.02 2.50 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.11 2.15 5.67 -2.39 -0.01 2.14 16 Total: -1.00 -66.98 348.27 5.01 -61.97 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.88 Total: 15.61 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 4.42 Total: -26.90 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -2.13 Total: -77.42 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.04 Total: -19.33 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Total: -66.98 5.01 -61.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584352871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.488 kcal (2) G-P(sol) polarization free energy of solvation -66.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds