Wall clock time and date at job start Tue Mar 31 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 C 1.50699 * 109.47285 * 120.00189 * 2 1 3 5 5 H 1.08004 * 119.99797 * 125.07067 * 4 2 1 6 6 C 1.37876 * 119.99919 * 305.06883 * 4 2 1 7 7 N 1.31509 * 120.00111 * 351.45094 * 6 4 2 8 8 Si 1.86807 * 119.99850 * 171.44727 * 6 4 2 9 9 H 1.48498 * 109.46903 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47017 * 120.00077 * 8 6 4 11 11 H 1.48500 * 109.46951 * 240.00413 * 8 6 4 12 12 C 1.53001 * 109.47079 * 240.00013 * 2 1 3 13 13 N 1.46501 * 109.46923 * 60.00184 * 12 2 1 14 14 C 1.34778 * 120.00301 * 179.97438 * 13 12 2 15 15 O 1.21288 * 119.99519 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00297 * 179.97438 * 14 13 12 17 17 H 1.08989 * 115.55213 * 35.43190 * 16 14 13 18 18 C 1.53039 * 117.50115 * 181.12795 * 16 14 13 19 19 C 1.52808 * 59.96590 * 107.47241 * 18 16 14 20 20 C 1.53149 * 117.75194 * 107.62856 * 19 18 16 21 21 C 1.53182 * 108.88833 * 199.62112 * 20 19 18 22 22 C 1.52946 * 109.44781 * 303.43664 * 21 20 19 23 23 C 1.52944 * 109.82310 * 62.98182 * 22 21 20 24 24 C 1.53147 * 117.75047 * 252.36888 * 19 18 16 25 25 H 1.08998 * 109.47318 * 292.82541 * 1 2 3 26 26 H 1.09001 * 109.47368 * 52.82690 * 1 2 3 27 27 H 1.09005 * 109.47174 * 172.83141 * 1 2 3 28 28 H 1.09004 * 109.47004 * 187.45892 * 3 2 1 29 29 H 1.08995 * 109.47095 * 307.45785 * 3 2 1 30 30 H 1.08995 * 109.46812 * 67.46296 * 3 2 1 31 31 H 0.96999 * 120.00141 * 5.72052 * 7 6 4 32 32 H 1.09003 * 109.47257 * 179.97438 * 12 2 1 33 33 H 1.09001 * 109.47553 * 300.00014 * 12 2 1 34 34 H 0.97000 * 120.00007 * 359.97438 * 13 12 2 35 35 H 1.09005 * 117.49955 * 214.95122 * 18 16 14 36 36 H 1.08996 * 117.50523 * 359.96712 * 18 16 14 37 37 H 1.09005 * 109.57067 * 319.43939 * 20 19 18 38 38 H 1.08993 * 109.57022 * 79.79709 * 20 19 18 39 39 H 1.08996 * 109.47367 * 183.44042 * 21 20 19 40 40 H 1.09003 * 109.47715 * 63.42988 * 21 20 19 41 41 H 1.08997 * 109.41042 * 302.87010 * 22 21 20 42 42 H 1.09003 * 109.40491 * 183.08928 * 22 21 20 43 43 H 1.08998 * 109.47595 * 177.01363 * 23 22 21 44 44 H 1.08997 * 109.47409 * 57.00481 * 23 22 21 45 45 H 1.09001 * 109.56802 * 280.19556 * 24 19 18 46 46 H 1.08998 * 109.57105 * 40.55385 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.7190 -1.5384 1.1334 6 6 1.6153 -0.3034 2.4800 7 7 0.9169 0.8030 2.6121 8 14 2.0423 -1.3238 3.9854 9 1 2.8286 -2.5132 3.5704 10 1 2.8447 -0.5035 4.9280 11 1 0.7925 -1.7662 4.6543 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4454 14 6 1.8775 -0.4906 -3.6696 15 8 2.5756 -1.4763 -3.7809 16 6 1.3747 0.2195 -4.9000 17 1 1.3050 1.3043 -4.8212 18 6 1.7577 -0.3672 -6.2606 19 6 0.3239 -0.4963 -5.7482 20 6 -0.7532 0.3611 -6.4192 21 6 -1.9613 0.4620 -5.4828 22 6 -2.4587 -0.9431 -5.1401 23 6 -1.3723 -1.7073 -4.3818 24 6 -0.1454 -1.8779 -5.2828 25 1 -0.3634 0.3986 0.9472 26 1 -0.3634 0.6209 -0.8189 27 1 -0.3634 -1.0197 -0.1282 28 1 3.1218 1.4454 -0.1334 29 1 1.5718 1.9934 -0.8157 30 1 1.7897 1.9163 0.9492 31 1 0.6240 1.2886 1.8251 32 1 3.1299 -0.7209 -1.2495 33 1 1.6766 -1.7489 -1.2493 34 1 0.9936 0.7579 -2.3564 35 1 1.9393 0.3318 -7.0770 36 1 2.3736 -1.2664 -6.2657 37 1 -0.3577 1.3581 -6.6135 38 1 -1.0565 -0.1025 -7.3578 39 1 -2.7577 1.0192 -5.9760 40 1 -1.6699 0.9776 -4.5678 41 1 -2.7017 -1.4757 -6.0595 42 1 -3.3511 -0.8698 -4.5185 43 1 -1.7513 -2.6880 -4.0941 44 1 -1.0922 -1.1495 -3.4882 45 1 -0.4100 -2.4844 -6.1489 46 1 0.6532 -2.3655 -4.7237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:41 Heat of formation + Delta-G solvation = -41.781665 kcal Electronic energy + Delta-G solvation = -23163.908550 eV Core-core repulsion = 20053.000035 eV Total energy + Delta-G solvation = -3110.908515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35654 -38.30358 -36.71796 -34.71212 -33.50504 -30.98626 -30.56400 -27.79382 -26.21031 -26.05999 -24.92317 -22.99464 -22.80010 -21.17326 -20.11225 -18.95783 -18.68949 -17.21984 -16.33160 -15.81456 -15.24241 -14.70534 -14.50386 -14.19405 -13.81762 -13.75505 -13.55428 -13.04533 -12.76621 -12.71406 -12.66093 -12.32693 -12.28485 -11.71332 -11.55396 -11.31946 -11.21952 -11.16461 -10.94241 -10.74809 -10.62338 -10.61733 -10.27466 -10.13590 -10.03154 -9.89308 -9.73687 -9.55208 -9.35421 -8.55591 -8.42179 -8.20250 -6.27387 -4.11342 2.82108 3.43346 3.45544 3.59772 3.62728 3.85259 4.49601 4.54550 4.60384 4.73091 4.79499 5.00157 5.05941 5.22055 5.27070 5.31001 5.31475 5.41845 5.55323 5.70261 5.71822 5.75204 5.83534 5.94769 5.99884 6.05466 6.08368 6.11183 6.16986 6.20791 6.25464 6.37517 6.38351 6.55919 6.62327 6.71160 6.78565 6.91033 7.06430 7.10560 7.49376 7.65173 8.03855 8.19264 8.40251 8.68906 8.83661 9.59059 10.98806 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.004363 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.166888 B = 6416.011450 C = 6754.154653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 C -0.144 4.144 4 C -0.586 4.586 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.918 5.918 8 Si 1.069 2.931 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.141 3.859 13 N -0.715 5.715 14 C 0.538 3.462 15 O -0.552 6.552 16 C -0.184 4.184 17 H 0.117 0.883 18 C -0.143 4.143 19 C -0.090 4.090 20 C -0.081 4.081 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.091 4.091 25 H 0.072 0.928 26 H 0.016 0.984 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.015 0.985 30 H 0.070 0.930 31 H 0.281 0.719 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.396 0.604 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 0.568 -17.014 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.041 3.959 3 C -0.202 4.202 4 C -0.624 4.624 5 H 0.071 0.929 6 C -0.178 4.178 7 N -0.558 5.558 8 Si 0.898 3.102 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.214 1.214 12 C 0.019 3.981 13 N -0.364 5.364 14 C 0.324 3.676 15 O -0.432 6.432 16 C -0.205 4.205 17 H 0.135 0.865 18 C -0.181 4.181 19 C -0.091 4.091 20 C -0.118 4.118 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.129 4.129 25 H 0.091 0.909 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.231 0.769 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.149 -0.169 -15.403 16.241 hybrid contribution -0.063 0.554 -1.532 1.630 sum -5.212 0.384 -16.935 17.723 Atomic orbital electron populations 1.22023 0.98216 0.99334 1.00645 1.18521 0.92310 0.92650 0.92469 1.22081 0.99256 0.98433 1.00409 1.21798 1.30512 1.18712 0.91410 0.92940 1.25658 0.94894 0.96361 1.00844 1.70817 1.36429 1.13909 1.34647 0.83542 0.76261 0.75237 0.75147 1.21518 1.21449 1.21378 1.21579 0.98083 0.95657 0.82826 1.46227 1.52464 1.31819 1.05908 1.19524 0.80015 0.84130 0.83980 1.90649 1.38727 1.26873 1.86902 1.22425 1.06524 0.99751 0.91842 0.86494 1.23036 0.97348 1.03311 0.94377 1.21501 0.90105 0.96933 1.00570 1.21185 0.94225 0.98450 0.97971 1.21530 0.97071 0.97201 0.99765 1.21484 0.98064 0.95813 1.00106 1.21519 0.95066 1.00348 0.98681 1.21261 0.98409 0.93757 0.99436 0.90923 0.96505 0.94471 0.94545 0.96647 0.91093 0.90280 0.92721 0.92611 0.76917 0.88337 0.87525 0.91746 0.91224 0.92046 0.91736 0.92240 0.92154 0.91995 0.91606 0.91516 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 7.85 37.15 0.29 -2.89 16 2 C 0.04 0.95 0.50 -155.66 -0.08 0.88 16 3 C -0.14 -3.19 7.91 37.16 0.29 -2.90 16 4 C -0.59 -15.64 8.00 -34.44 -0.28 -15.92 16 5 H 0.05 1.44 7.76 -52.48 -0.41 1.03 16 6 C 0.03 0.72 5.06 -17.82 -0.09 0.63 16 7 N -0.92 -25.80 12.17 55.43 0.67 -25.13 16 8 Si 1.07 24.61 29.91 -169.99 -5.08 19.53 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 C 0.14 3.02 4.50 -4.04 -0.02 3.00 16 13 N -0.71 -12.67 5.04 -60.29 -0.30 -12.97 16 14 C 0.54 9.30 6.49 -10.99 -0.07 9.23 16 15 O -0.55 -11.47 15.17 5.55 0.08 -11.38 16 16 C -0.18 -2.41 5.89 -91.83 -0.54 -2.96 16 17 H 0.12 1.33 8.14 -51.94 -0.42 0.91 16 18 C -0.14 -1.67 9.50 -26.81 -0.25 -1.93 16 19 C -0.09 -1.03 1.97 -154.53 -0.31 -1.34 16 20 C -0.08 -0.74 5.67 -26.56 -0.15 -0.89 16 21 C -0.12 -1.10 5.93 -26.67 -0.16 -1.26 16 22 C -0.12 -1.16 5.82 -26.79 -0.16 -1.32 16 23 C -0.12 -1.43 5.93 -26.67 -0.16 -1.59 16 24 C -0.09 -1.14 5.29 -26.56 -0.14 -1.28 16 25 H 0.07 1.78 5.16 -51.93 -0.27 1.51 16 26 H 0.02 0.31 7.04 -51.93 -0.37 -0.06 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.01 0.28 7.05 -51.93 -0.37 -0.08 16 30 H 0.07 1.74 5.31 -51.93 -0.28 1.47 16 31 H 0.28 7.64 3.59 -40.82 -0.15 7.49 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.40 6.38 6.29 -40.82 -0.26 6.12 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.42 7.67 -51.93 -0.40 1.02 16 37 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.20 6.17 -51.93 -0.32 0.88 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -29.25 348.06 -9.14 -38.38 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.94 Total: 6.87 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -1.81 Total: -20.54 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.37 Total: -38.10 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.25 -9.14 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.398 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds