Wall clock time and date at job start Tue Mar 31 2020 02:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47070 * 2 1 4 4 C 1.50699 * 109.47285 * 120.00189 * 2 1 3 5 5 H 1.08004 * 119.99797 * 125.07067 * 4 2 1 6 6 C 1.37876 * 119.99919 * 305.06883 * 4 2 1 7 7 N 1.31509 * 120.00111 * 351.45094 * 6 4 2 8 8 Si 1.86807 * 119.99850 * 171.44727 * 6 4 2 9 9 H 1.48498 * 109.46903 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47017 * 120.00077 * 8 6 4 11 11 H 1.48500 * 109.46951 * 240.00413 * 8 6 4 12 12 C 1.53001 * 109.47079 * 240.00013 * 2 1 3 13 13 N 1.46501 * 109.46923 * 60.00184 * 12 2 1 14 14 C 1.34778 * 120.00301 * 179.97438 * 13 12 2 15 15 O 1.21288 * 119.99519 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00297 * 179.97438 * 14 13 12 17 17 H 1.08989 * 115.55213 * 35.43190 * 16 14 13 18 18 C 1.53039 * 117.50115 * 181.12795 * 16 14 13 19 19 C 1.52808 * 59.96590 * 107.47241 * 18 16 14 20 20 C 1.53149 * 117.75194 * 107.62856 * 19 18 16 21 21 C 1.53182 * 108.88833 * 199.62112 * 20 19 18 22 22 C 1.52946 * 109.44781 * 303.43664 * 21 20 19 23 23 C 1.52944 * 109.82310 * 62.98182 * 22 21 20 24 24 C 1.53147 * 117.75047 * 252.36888 * 19 18 16 25 25 H 1.08998 * 109.47318 * 292.82541 * 1 2 3 26 26 H 1.09001 * 109.47368 * 52.82690 * 1 2 3 27 27 H 1.09005 * 109.47174 * 172.83141 * 1 2 3 28 28 H 1.09004 * 109.47004 * 187.45892 * 3 2 1 29 29 H 1.08995 * 109.47095 * 307.45785 * 3 2 1 30 30 H 1.08995 * 109.46812 * 67.46296 * 3 2 1 31 31 H 0.96999 * 120.00141 * 5.72052 * 7 6 4 32 32 H 1.09003 * 109.47257 * 179.97438 * 12 2 1 33 33 H 1.09001 * 109.47553 * 300.00014 * 12 2 1 34 34 H 0.97000 * 120.00007 * 359.97438 * 13 12 2 35 35 H 1.09005 * 117.49955 * 214.95122 * 18 16 14 36 36 H 1.08996 * 117.50523 * 359.96712 * 18 16 14 37 37 H 1.09005 * 109.57067 * 319.43939 * 20 19 18 38 38 H 1.08993 * 109.57022 * 79.79709 * 20 19 18 39 39 H 1.08996 * 109.47367 * 183.44042 * 21 20 19 40 40 H 1.09003 * 109.47715 * 63.42988 * 21 20 19 41 41 H 1.08997 * 109.41042 * 302.87010 * 22 21 20 42 42 H 1.09003 * 109.40491 * 183.08928 * 22 21 20 43 43 H 1.08998 * 109.47595 * 177.01363 * 23 22 21 44 44 H 1.08997 * 109.47409 * 57.00481 * 23 22 21 45 45 H 1.09001 * 109.56802 * 280.19556 * 24 19 18 46 46 H 1.08998 * 109.57105 * 40.55385 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.7190 -1.5384 1.1334 6 6 1.6153 -0.3034 2.4800 7 7 0.9169 0.8030 2.6121 8 14 2.0423 -1.3238 3.9854 9 1 2.8286 -2.5132 3.5704 10 1 2.8447 -0.5035 4.9280 11 1 0.7925 -1.7662 4.6543 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0306 -2.4454 14 6 1.8775 -0.4906 -3.6696 15 8 2.5756 -1.4763 -3.7809 16 6 1.3747 0.2195 -4.9000 17 1 1.3050 1.3043 -4.8212 18 6 1.7577 -0.3672 -6.2606 19 6 0.3239 -0.4963 -5.7482 20 6 -0.7532 0.3611 -6.4192 21 6 -1.9613 0.4620 -5.4828 22 6 -2.4587 -0.9431 -5.1401 23 6 -1.3723 -1.7073 -4.3818 24 6 -0.1454 -1.8779 -5.2828 25 1 -0.3634 0.3986 0.9472 26 1 -0.3634 0.6209 -0.8189 27 1 -0.3634 -1.0197 -0.1282 28 1 3.1218 1.4454 -0.1334 29 1 1.5718 1.9934 -0.8157 30 1 1.7897 1.9163 0.9492 31 1 0.6240 1.2886 1.8251 32 1 3.1299 -0.7209 -1.2495 33 1 1.6766 -1.7489 -1.2493 34 1 0.9936 0.7579 -2.3564 35 1 1.9393 0.3318 -7.0770 36 1 2.3736 -1.2664 -6.2657 37 1 -0.3577 1.3581 -6.6135 38 1 -1.0565 -0.1025 -7.3578 39 1 -2.7577 1.0192 -5.9760 40 1 -1.6699 0.9776 -4.5678 41 1 -2.7017 -1.4757 -6.0595 42 1 -3.3511 -0.8698 -4.5185 43 1 -1.7513 -2.6880 -4.0941 44 1 -1.0922 -1.1495 -3.4882 45 1 -0.4100 -2.4844 -6.1489 46 1 0.6532 -2.3655 -4.7237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:40 Heat of formation + Delta-G solvation = -57.011147 kcal Electronic energy + Delta-G solvation = -23164.568950 eV Core-core repulsion = 20053.000035 eV Total energy + Delta-G solvation = -3111.568914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54173 -39.62415 -38.40551 -35.67925 -35.22464 -32.44991 -31.82170 -28.79407 -27.89861 -27.88572 -26.71999 -24.34011 -23.69197 -22.00982 -21.44460 -20.77008 -19.85062 -18.82253 -17.87034 -16.98343 -16.67766 -15.96504 -15.73177 -15.61077 -15.33188 -14.93473 -14.67083 -14.61865 -14.44611 -14.12938 -13.77169 -13.44486 -13.36605 -13.24505 -13.15616 -12.78004 -12.59890 -12.54814 -12.44318 -12.10836 -12.00682 -11.95179 -11.74449 -11.61749 -11.43826 -11.23011 -10.97578 -10.81005 -10.59415 -10.46903 -10.24911 -10.00721 -8.40542 -6.25865 1.52127 1.54909 1.61267 1.78703 2.24395 2.59392 2.81786 3.22872 3.57968 3.69412 3.79109 3.89485 4.01270 4.15238 4.20238 4.27985 4.30794 4.40741 4.43174 4.45084 4.57534 4.75751 4.76612 4.79578 4.80804 4.88212 4.88978 4.94773 4.95297 5.04975 5.10830 5.13277 5.16226 5.18063 5.24492 5.29224 5.36756 5.44036 5.49835 5.55217 5.61880 5.80266 6.15138 6.30357 6.59807 6.75584 7.28261 7.49718 8.87293 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.004363 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.166888 B = 6416.011450 C = 6754.154653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.036 3.964 3 C -0.133 4.133 4 C -0.605 4.605 5 H 0.034 0.966 6 C -0.013 4.013 7 N -0.936 5.936 8 Si 1.107 2.893 9 H -0.283 1.283 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.159 3.841 13 N -0.708 5.708 14 C 0.535 3.465 15 O -0.593 6.593 16 C -0.195 4.195 17 H 0.144 0.856 18 C -0.137 4.137 19 C -0.078 4.078 20 C -0.075 4.075 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.093 4.093 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.280 0.720 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.407 0.593 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 1.909 -19.193 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.035 3.965 3 C -0.191 4.191 4 C -0.643 4.643 5 H 0.053 0.947 6 C -0.213 4.213 7 N -0.577 5.577 8 Si 0.932 3.068 9 H -0.208 1.208 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.035 3.965 13 N -0.358 5.358 14 C 0.324 3.676 15 O -0.474 6.474 16 C -0.216 4.216 17 H 0.161 0.839 18 C -0.174 4.174 19 C -0.079 4.079 20 C -0.112 4.112 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.244 0.756 35 H 0.150 0.850 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.461 1.196 -17.602 18.788 hybrid contribution 0.358 0.071 -0.894 0.966 sum -6.103 1.266 -18.496 19.518 Atomic orbital electron populations 1.21855 0.97172 0.99342 1.00649 1.18520 0.93049 0.93087 0.91820 1.21919 0.98994 0.97752 1.00464 1.22096 1.30382 1.18566 0.93271 0.94740 1.26731 0.94570 0.96668 1.03355 1.70875 1.37372 1.14615 1.34871 0.83032 0.76510 0.74428 0.72871 1.20810 1.20757 1.20576 1.21074 0.96638 0.94782 0.83960 1.46036 1.52670 1.31963 1.05164 1.20305 0.78941 0.83577 0.84821 1.90630 1.40508 1.28821 1.87477 1.22448 1.08367 1.00702 0.90113 0.83864 1.23128 0.97139 1.02953 0.94177 1.21622 0.90748 0.96213 0.99303 1.21234 0.92976 0.98923 0.98101 1.21553 0.97834 0.96591 0.99626 1.21472 0.97062 0.96230 1.00348 1.21502 0.95814 1.00229 0.98047 1.21231 0.97360 0.94789 0.99611 0.93127 0.93237 0.95279 0.95278 0.93227 0.93333 0.90457 0.94783 0.94753 0.75628 0.85022 0.89785 0.89911 0.89523 0.89979 0.92807 0.90823 0.91916 0.92500 0.94037 0.89938 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 7.85 71.98 0.57 -5.26 16 2 C 0.04 1.68 0.50 -52.93 -0.03 1.66 16 3 C -0.13 -5.88 7.91 71.98 0.57 -5.31 16 4 C -0.60 -33.10 8.00 25.60 0.20 -32.89 16 5 H 0.03 1.96 7.76 -2.91 -0.02 1.93 16 6 C -0.01 -0.72 5.06 84.66 0.43 -0.30 16 7 N -0.94 -53.06 12.17 21.45 0.26 -52.80 16 8 Si 1.11 50.02 29.91 68.60 2.05 52.07 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 C 0.16 7.02 4.50 86.38 0.39 7.41 16 13 N -0.71 -24.96 5.04 -463.04 -2.33 -27.30 16 14 C 0.53 18.51 6.49 87.66 0.57 19.08 16 15 O -0.59 -25.44 15.17 -3.06 -0.05 -25.48 16 16 C -0.20 -4.72 5.89 -11.58 -0.07 -4.79 16 17 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 18 C -0.14 -2.87 9.50 30.54 0.29 -2.58 16 19 C -0.08 -1.59 1.97 -52.20 -0.10 -1.69 16 20 C -0.08 -1.05 5.67 30.70 0.17 -0.87 16 21 C -0.12 -1.77 5.93 30.64 0.18 -1.59 16 22 C -0.11 -1.96 5.82 30.56 0.18 -1.78 16 23 C -0.12 -2.78 5.93 30.64 0.18 -2.59 16 24 C -0.09 -2.24 5.29 30.70 0.16 -2.08 16 25 H 0.05 2.47 5.16 -2.39 -0.01 2.46 16 26 H 0.05 1.80 7.04 -2.39 -0.02 1.79 16 27 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.80 7.05 -2.39 -0.02 1.78 16 30 H 0.05 2.38 5.31 -2.39 -0.01 2.36 16 31 H 0.28 15.35 3.59 -92.71 -0.33 15.01 16 32 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.41 12.45 6.29 -92.71 -0.58 11.86 16 35 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.08 2.18 7.67 -2.39 -0.02 2.17 16 37 H 0.08 0.92 8.09 -2.38 -0.02 0.90 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.04 1.25 6.17 -2.39 -0.01 1.24 16 Total: -1.00 -65.46 348.06 4.43 -61.03 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.80 Total: 26.08 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 3.70 Total: -33.59 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -2.07 Total: -80.10 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.07 kcal Total: -65.46 4.43 -61.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.021 kcal (2) G-P(sol) polarization free energy of solvation -65.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds