Wall clock time and date at job start Tue Mar 31 2020 02:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 109.47413 * 2 1 4 4 C 1.50703 * 109.46926 * 120.00588 * 2 1 3 5 5 H 1.07993 * 120.00283 * 119.99934 * 4 2 1 6 6 C 1.37878 * 119.99461 * 299.99350 * 4 2 1 7 7 N 1.31509 * 120.00463 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99729 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46692 * 270.00097 * 8 6 4 10 10 H 1.48501 * 109.47120 * 29.99720 * 8 6 4 11 11 H 1.48497 * 109.47148 * 150.00189 * 8 6 4 12 12 C 1.53001 * 109.46635 * 239.99892 * 2 1 3 13 13 N 1.46495 * 109.47503 * 60.00468 * 12 2 1 14 14 C 1.34778 * 120.00689 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99267 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00233 * 179.97438 * 14 13 12 17 17 H 1.09005 * 115.55532 * 304.36904 * 16 14 13 18 18 C 1.53035 * 117.50541 * 158.62841 * 16 14 13 19 19 C 1.52808 * 59.96374 * 252.52474 * 18 16 14 20 20 C 1.53148 * 117.74786 * 107.62949 * 19 18 16 21 21 C 1.53184 * 108.88532 * 199.61708 * 20 19 18 22 22 C 1.52939 * 109.45103 * 303.44085 * 21 20 19 23 23 C 1.52942 * 109.82376 * 62.97769 * 22 21 20 24 24 C 1.53147 * 117.74845 * 252.36762 * 19 18 16 25 25 H 1.09005 * 109.47109 * 299.99675 * 1 2 3 26 26 H 1.08998 * 109.47263 * 60.00048 * 1 2 3 27 27 H 1.09004 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47735 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47440 * 300.00100 * 3 2 1 30 30 H 1.09005 * 109.47440 * 59.99906 * 3 2 1 31 31 H 0.96996 * 120.00461 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.47093 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47358 * 299.99815 * 12 2 1 34 34 H 0.97003 * 119.99878 * 359.97438 * 13 12 2 35 35 H 1.09007 * 117.50177 * 0.02562 * 18 16 14 36 36 H 1.08996 * 117.50634 * 145.04546 * 18 16 14 37 37 H 1.08998 * 109.57262 * 319.43436 * 20 19 18 38 38 H 1.09006 * 109.57160 * 79.80054 * 20 19 18 39 39 H 1.08997 * 109.47785 * 183.44209 * 21 20 19 40 40 H 1.09002 * 109.47202 * 63.43110 * 21 20 19 41 41 H 1.09007 * 109.41265 * 302.86974 * 22 21 20 42 42 H 1.08997 * 109.41031 * 183.08871 * 22 21 20 43 43 H 1.09006 * 109.47481 * 177.01747 * 23 22 21 44 44 H 1.09002 * 109.47821 * 57.01405 * 23 22 21 45 45 H 1.08997 * 109.56913 * 280.19464 * 24 19 18 46 46 H 1.08996 * 109.57016 * 40.43743 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 1.3445 -2.1617 4.4122 10 1 3.6306 -1.7569 3.7119 11 1 2.4872 -0.1405 5.1120 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0307 -2.4454 14 6 1.8775 -0.4909 -3.6696 15 8 2.5747 -1.4770 -3.7808 16 6 1.3747 0.2193 -4.9000 17 1 0.2935 0.3417 -4.9634 18 6 2.1391 -0.0041 -6.2068 19 6 2.2463 1.3342 -5.4772 20 6 3.5618 1.6521 -4.7603 21 6 3.3081 2.7495 -3.7221 22 6 2.7049 3.9738 -4.4123 23 6 1.3472 3.6122 -5.0164 24 6 1.5380 2.5427 -6.0962 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7082 1.1608 3.4844 32 1 3.1299 -0.7217 -1.2491 33 1 1.6765 -1.7489 -1.2492 34 1 0.9937 0.7578 -2.3564 35 1 3.0054 -0.6651 -6.1767 36 1 1.5607 -0.0289 -7.1303 37 1 3.9316 0.7562 -4.2615 38 1 4.2983 1.9987 -5.4854 39 1 4.2500 3.0265 -3.2485 40 1 2.6155 2.3809 -2.9655 41 1 3.3752 4.3109 -5.2031 42 1 2.5756 4.7736 -3.6831 43 1 0.8987 4.5010 -5.4604 44 1 0.6926 3.2268 -4.2347 45 1 2.1452 2.9462 -6.9065 46 1 0.5668 2.2368 -6.4852 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:45 Heat of formation + Delta-G solvation = -47.984018 kcal Electronic energy + Delta-G solvation = -23309.945176 eV Core-core repulsion = 20198.767707 eV Total energy + Delta-G solvation = -3111.177469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.27628 -38.16223 -36.34939 -34.63183 -33.20170 -30.96116 -30.79604 -27.72711 -25.92446 -25.72224 -25.17354 -23.06460 -22.76685 -21.10580 -20.05529 -18.81582 -18.49665 -16.86466 -15.80450 -15.75970 -15.05091 -14.83030 -14.52609 -14.33456 -13.90193 -13.72594 -13.36783 -12.93195 -12.83975 -12.61096 -12.31981 -12.26055 -12.16123 -11.66775 -11.41229 -11.20701 -11.15722 -11.11008 -10.88127 -10.69851 -10.64963 -10.37862 -10.22964 -10.16803 -9.96661 -9.69731 -9.62313 -9.43458 -9.15551 -8.77349 -8.42646 -8.27073 -6.01543 -4.11484 2.97604 3.28509 3.35515 3.39346 3.63970 3.88850 4.40515 4.58589 4.65087 4.77557 4.85623 5.07791 5.13106 5.25232 5.28751 5.34608 5.41986 5.47739 5.60783 5.76871 5.77177 5.81860 5.89759 6.00208 6.09213 6.14307 6.17517 6.26628 6.26922 6.34627 6.39749 6.44707 6.54142 6.80406 6.84798 6.95863 7.02986 7.08156 7.36930 7.56597 7.70071 8.01835 8.09892 8.19267 8.39661 8.77744 8.89650 9.54313 10.99788 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.004648 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.039166 B = 6022.163156 C = 6534.520163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.287 1.287 12 C 0.132 3.868 13 N -0.710 5.710 14 C 0.537 3.463 15 O -0.554 6.554 16 C -0.181 4.181 17 H 0.121 0.879 18 C -0.144 4.144 19 C -0.097 4.097 20 C -0.086 4.086 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.080 4.080 25 H 0.085 0.915 26 H 0.006 0.994 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.006 0.994 30 H 0.085 0.915 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 6.690 -15.428 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.186 4.186 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.213 1.213 12 C 0.010 3.990 13 N -0.360 5.360 14 C 0.322 3.678 15 O -0.434 6.434 16 C -0.202 4.202 17 H 0.139 0.861 18 C -0.181 4.181 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.118 4.118 25 H 0.104 0.896 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.025 0.975 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.233 0.767 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.396 6.097 -15.313 16.487 hybrid contribution -0.097 -0.187 0.971 0.993 sum 0.300 5.910 -14.343 15.515 Atomic orbital electron populations 1.21832 0.97837 0.99141 1.00047 1.18341 0.92723 0.92787 0.90550 1.21817 0.98495 0.98289 1.00024 1.20986 1.31427 1.12042 0.89918 0.92511 1.24869 0.94882 0.94900 0.98810 1.69799 1.36723 1.22752 1.23183 0.86587 0.79334 0.79399 0.82647 1.20731 1.19920 1.21275 1.21700 0.98041 0.95748 0.83536 1.46255 1.52462 1.31529 1.05787 1.19531 0.80195 0.84001 0.84057 1.90655 1.38952 1.26781 1.86964 1.22426 0.99297 1.04082 0.94399 0.86122 1.23013 1.02595 0.98624 0.93917 1.21553 0.97069 0.89774 1.01314 1.21191 0.94267 0.99403 0.97445 1.21562 1.01334 0.94950 0.97963 1.21479 0.96490 0.97787 0.99699 1.21530 0.97636 0.98035 0.98367 1.21171 0.99427 0.93712 0.97460 0.89610 0.97534 0.95497 0.95510 0.97461 0.89675 0.93036 0.92863 0.92887 0.76742 0.87799 0.88371 0.91352 0.91522 0.91937 0.91056 0.92351 0.92055 0.92093 0.91665 0.91340 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.31 0.50 -155.67 -0.08 1.23 16 3 C -0.13 -2.86 8.08 37.15 0.30 -2.56 16 4 C -0.51 -13.23 8.01 -34.44 -0.28 -13.50 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.53 9.35 55.43 0.52 -23.02 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 N -0.71 -12.71 4.69 -60.30 -0.28 -13.00 16 14 C 0.54 9.45 5.91 -10.99 -0.06 9.38 16 15 O -0.55 -11.82 16.46 5.55 0.09 -11.73 16 16 C -0.18 -2.41 5.88 -91.84 -0.54 -2.95 16 17 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 18 C -0.14 -1.71 9.50 -26.81 -0.25 -1.97 16 19 C -0.10 -1.11 1.97 -154.54 -0.30 -1.41 16 20 C -0.09 -1.07 5.29 -26.56 -0.14 -1.21 16 21 C -0.12 -1.49 5.93 -26.67 -0.16 -1.64 16 22 C -0.12 -1.19 5.82 -26.79 -0.16 -1.35 16 23 C -0.12 -1.12 5.93 -26.67 -0.16 -1.28 16 24 C -0.08 -0.75 5.67 -26.56 -0.15 -0.90 16 25 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 26 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.01 0.13 6.55 -51.93 -0.34 -0.21 16 30 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 31 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.40 6.55 6.07 -40.82 -0.25 6.31 16 35 H 0.10 1.40 7.84 -51.93 -0.41 0.99 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.04 6.92 -51.93 -0.36 0.68 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.01 7.47 -51.93 -0.39 0.62 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -27.90 351.43 -9.38 -37.27 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.19 Total: 5.81 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -1.79 Total: -16.36 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.24 Total: -36.01 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.90 -9.38 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.709 kcal (2) G-P(sol) polarization free energy of solvation -27.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds