Wall clock time and date at job start Tue Mar 31 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52989 * 109.47413 * 2 1 4 4 C 1.50703 * 109.46926 * 120.00588 * 2 1 3 5 5 H 1.07993 * 120.00283 * 119.99934 * 4 2 1 6 6 C 1.37878 * 119.99461 * 299.99350 * 4 2 1 7 7 N 1.31509 * 120.00463 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99729 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46692 * 270.00097 * 8 6 4 10 10 H 1.48501 * 109.47120 * 29.99720 * 8 6 4 11 11 H 1.48497 * 109.47148 * 150.00189 * 8 6 4 12 12 C 1.53001 * 109.46635 * 239.99892 * 2 1 3 13 13 N 1.46495 * 109.47503 * 60.00468 * 12 2 1 14 14 C 1.34778 * 120.00689 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99267 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00233 * 179.97438 * 14 13 12 17 17 H 1.09005 * 115.55532 * 304.36904 * 16 14 13 18 18 C 1.53035 * 117.50541 * 158.62841 * 16 14 13 19 19 C 1.52808 * 59.96374 * 252.52474 * 18 16 14 20 20 C 1.53148 * 117.74786 * 107.62949 * 19 18 16 21 21 C 1.53184 * 108.88532 * 199.61708 * 20 19 18 22 22 C 1.52939 * 109.45103 * 303.44085 * 21 20 19 23 23 C 1.52942 * 109.82376 * 62.97769 * 22 21 20 24 24 C 1.53147 * 117.74845 * 252.36762 * 19 18 16 25 25 H 1.09005 * 109.47109 * 299.99675 * 1 2 3 26 26 H 1.08998 * 109.47263 * 60.00048 * 1 2 3 27 27 H 1.09004 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47735 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47440 * 300.00100 * 3 2 1 30 30 H 1.09005 * 109.47440 * 59.99906 * 3 2 1 31 31 H 0.96996 * 120.00461 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.47093 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47358 * 299.99815 * 12 2 1 34 34 H 0.97003 * 119.99878 * 359.97438 * 13 12 2 35 35 H 1.09007 * 117.50177 * 0.02562 * 18 16 14 36 36 H 1.08996 * 117.50634 * 145.04546 * 18 16 14 37 37 H 1.08998 * 109.57262 * 319.43436 * 20 19 18 38 38 H 1.09006 * 109.57160 * 79.80054 * 20 19 18 39 39 H 1.08997 * 109.47785 * 183.44209 * 21 20 19 40 40 H 1.09002 * 109.47202 * 63.43110 * 21 20 19 41 41 H 1.09007 * 109.41265 * 302.86974 * 22 21 20 42 42 H 1.08997 * 109.41031 * 183.08871 * 22 21 20 43 43 H 1.09006 * 109.47481 * 177.01747 * 23 22 21 44 44 H 1.09002 * 109.47821 * 57.01405 * 23 22 21 45 45 H 1.08997 * 109.56913 * 280.19464 * 24 19 18 46 46 H 1.08996 * 109.57016 * 40.43743 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 1.3445 -2.1617 4.4122 10 1 3.6306 -1.7569 3.7119 11 1 2.4872 -0.1405 5.1120 12 6 2.0399 -0.7213 -1.2493 13 7 1.5516 -0.0307 -2.4454 14 6 1.8775 -0.4909 -3.6696 15 8 2.5747 -1.4770 -3.7808 16 6 1.3747 0.2193 -4.9000 17 1 0.2935 0.3417 -4.9634 18 6 2.1391 -0.0041 -6.2068 19 6 2.2463 1.3342 -5.4772 20 6 3.5618 1.6521 -4.7603 21 6 3.3081 2.7495 -3.7221 22 6 2.7049 3.9738 -4.4123 23 6 1.3472 3.6122 -5.0164 24 6 1.5380 2.5427 -6.0962 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7082 1.1608 3.4844 32 1 3.1299 -0.7217 -1.2491 33 1 1.6765 -1.7489 -1.2492 34 1 0.9937 0.7578 -2.3564 35 1 3.0054 -0.6651 -6.1767 36 1 1.5607 -0.0289 -7.1303 37 1 3.9316 0.7562 -4.2615 38 1 4.2983 1.9987 -5.4854 39 1 4.2500 3.0265 -3.2485 40 1 2.6155 2.3809 -2.9655 41 1 3.3752 4.3109 -5.2031 42 1 2.5756 4.7736 -3.6831 43 1 0.8987 4.5010 -5.4604 44 1 0.6926 3.2268 -4.2347 45 1 2.1452 2.9462 -6.9065 46 1 0.5668 2.2368 -6.4852 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:44 Heat of formation + Delta-G solvation = -61.881156 kcal Electronic energy + Delta-G solvation = -23310.547801 eV Core-core repulsion = 20198.767707 eV Total energy + Delta-G solvation = -3111.780094 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47219 -39.44669 -38.06632 -35.61414 -34.96273 -32.70334 -31.77975 -28.71344 -27.58262 -27.56821 -27.04332 -24.39109 -23.64881 -21.95876 -21.35431 -20.59513 -19.64848 -18.23256 -17.67559 -16.83963 -16.64661 -16.52494 -15.79318 -15.48869 -15.11158 -14.85235 -14.69169 -14.58198 -14.12320 -13.98909 -13.73729 -13.42572 -13.20319 -13.13296 -13.08291 -12.70344 -12.62603 -12.56700 -12.26849 -12.15567 -12.04747 -11.95704 -11.58179 -11.49634 -11.31778 -11.08498 -10.92249 -10.77514 -10.69687 -10.43991 -10.39794 -9.91817 -8.03170 -6.18935 1.41327 1.44190 1.52419 1.62818 2.28935 2.48400 2.79836 3.20297 3.61796 3.72377 3.83365 3.93700 4.09050 4.22744 4.33292 4.44564 4.45800 4.47885 4.50334 4.61895 4.69604 4.78299 4.84189 4.92043 4.97379 5.00674 5.04386 5.08625 5.09261 5.15079 5.17805 5.19811 5.32965 5.34397 5.36710 5.42073 5.52518 5.59966 5.61572 5.65907 5.66379 6.13670 6.20344 6.42527 6.69403 6.84749 7.34844 7.48718 8.95737 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.004648 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.039166 B = 6022.163156 C = 6534.520163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.115 4.115 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.277 1.277 11 H -0.281 1.281 12 C 0.149 3.851 13 N -0.703 5.703 14 C 0.535 3.465 15 O -0.597 6.597 16 C -0.193 4.193 17 H 0.146 0.854 18 C -0.139 4.139 19 C -0.082 4.082 20 C -0.086 4.086 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.075 4.075 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.261 0.739 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.407 0.593 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.031 0.969 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 8.271 -17.399 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.053 3.947 3 C -0.173 4.173 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.353 5.353 14 C 0.323 3.677 15 O -0.479 6.479 16 C -0.214 4.214 17 H 0.164 0.836 18 C -0.176 4.176 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.112 4.112 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.050 0.950 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.103 0.897 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.608 7.701 -17.292 18.939 hybrid contribution 0.270 -0.697 1.580 1.748 sum -0.338 7.004 -15.711 17.205 Atomic orbital electron populations 1.21671 0.97152 0.98610 1.00381 1.18333 0.93186 0.93073 0.90154 1.21624 0.97690 0.97692 1.00259 1.21253 1.31777 1.12124 0.91649 0.94004 1.25427 0.95121 0.95560 1.00872 1.69896 1.36928 1.23211 1.23624 0.85778 0.78622 0.78542 0.79978 1.20471 1.20222 1.20675 1.21234 0.96689 0.94965 0.84563 1.46075 1.52567 1.31570 1.05128 1.20304 0.79016 0.83407 0.84927 1.90632 1.40844 1.28866 1.87580 1.22436 1.00772 1.05490 0.92701 0.83615 1.23107 1.01822 0.98316 0.94331 1.21654 0.95895 0.90561 1.00102 1.21168 0.95502 0.97922 0.97766 1.21547 1.00687 0.95997 0.97624 1.21465 0.97257 0.96413 0.99975 1.21552 0.96831 0.98948 0.98267 1.21218 1.00297 0.92147 0.97517 0.91756 0.94566 0.96401 0.96553 0.94604 0.91873 0.92981 0.94854 0.94725 0.75628 0.90014 0.85150 0.95035 0.89920 0.92677 0.93170 0.90974 0.91967 0.90075 0.92621 0.89653 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.08 71.98 0.58 -4.83 16 2 C 0.05 2.49 0.50 -52.93 -0.03 2.47 16 3 C -0.11 -5.14 8.08 71.98 0.58 -4.56 16 4 C -0.53 -28.41 8.01 25.60 0.21 -28.20 16 5 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 6 C 0.03 1.60 5.15 84.66 0.44 2.03 16 7 N -0.90 -47.98 9.35 21.45 0.20 -47.78 16 8 Si 0.94 42.94 29.54 68.60 2.03 44.96 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.58 4.50 86.38 0.39 6.97 16 13 N -0.70 -25.18 4.69 -463.07 -2.17 -27.35 16 14 C 0.54 18.87 5.91 87.65 0.52 19.38 16 15 O -0.60 -26.25 16.46 -3.04 -0.05 -26.30 16 16 C -0.19 -4.78 5.88 -11.58 -0.07 -4.85 16 17 H 0.15 2.90 8.14 -2.38 -0.02 2.88 16 18 C -0.14 -2.97 9.50 30.54 0.29 -2.68 16 19 C -0.08 -1.66 1.97 -52.20 -0.10 -1.77 16 20 C -0.09 -2.07 5.29 30.71 0.16 -1.91 16 21 C -0.12 -2.86 5.93 30.64 0.18 -2.68 16 22 C -0.11 -2.01 5.82 30.55 0.18 -1.83 16 23 C -0.12 -1.81 5.93 30.63 0.18 -1.62 16 24 C -0.07 -1.06 5.67 30.70 0.17 -0.88 16 25 H 0.06 3.20 6.07 -2.38 -0.01 3.18 16 26 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 27 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.04 1.35 6.55 -2.38 -0.02 1.33 16 30 H 0.06 3.13 6.07 -2.38 -0.01 3.12 16 31 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.41 12.96 6.07 -92.71 -0.56 12.39 16 35 H 0.08 2.15 7.84 -2.38 -0.02 2.13 16 36 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 0.98 6.92 -2.39 -0.02 0.97 16 38 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.38 7.47 -2.39 -0.02 1.36 16 41 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 Total: -1.00 -61.83 351.43 4.06 -57.77 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.38 Total: 23.67 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 3.68 Total: -24.96 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.97 Total: -75.13 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -61.83 4.06 -57.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.116 kcal (2) G-P(sol) polarization free energy of solvation -61.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds