Wall clock time and date at job start Tue Mar 31 2020 01:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47044 * 2 1 4 4 C 1.52995 * 109.47166 * 239.99572 * 2 1 3 5 5 C 1.53005 * 109.47050 * 119.99576 * 2 1 3 6 6 C 1.52994 * 109.46980 * 59.99849 * 5 2 1 7 7 H 1.09009 * 115.55161 * 29.32982 * 6 5 2 8 8 C 1.52998 * 117.52383 * 243.63118 * 6 5 2 9 9 C 1.53000 * 117.50096 * 174.99883 * 6 5 2 10 10 H 1.08992 * 117.49714 * 0.02562 * 9 6 5 11 11 C 1.50705 * 117.50069 * 215.00481 * 9 6 5 12 12 O 1.21280 * 119.99799 * 0.02562 * 11 9 6 13 13 N 1.34773 * 120.00064 * 180.27450 * 11 9 6 14 14 C 1.46496 * 120.00252 * 179.72402 * 13 11 9 15 15 C 1.53004 * 109.47261 * 178.27408 * 14 13 11 16 16 C 1.50695 * 115.54756 * 65.14139 * 15 14 13 17 17 H 1.07998 * 120.00341 * 265.40094 * 16 15 14 18 18 C 1.37880 * 120.00089 * 85.40854 * 16 15 14 19 19 N 1.31524 * 119.99648 * 353.54924 * 18 16 15 20 20 Si 1.86797 * 120.00256 * 173.55181 * 18 16 15 21 21 H 1.48497 * 109.46925 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47220 * 120.00031 * 20 18 16 23 23 H 1.48508 * 109.46810 * 239.99839 * 20 18 16 24 24 C 1.53002 * 117.49610 * 279.47086 * 15 14 13 25 25 C 1.53002 * 117.49907 * 210.81212 * 15 14 13 26 26 H 1.08998 * 109.46947 * 300.00573 * 1 2 3 27 27 H 1.08997 * 109.46781 * 60.00016 * 1 2 3 28 28 H 1.08994 * 109.47029 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46796 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47173 * 299.99307 * 3 2 1 31 31 H 1.08998 * 109.47717 * 59.99898 * 3 2 1 32 32 H 1.08994 * 109.47330 * 300.00041 * 4 2 1 33 33 H 1.08997 * 109.46934 * 60.00505 * 4 2 1 34 34 H 1.09000 * 109.46950 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47009 * 300.00286 * 5 2 1 36 36 H 1.08991 * 109.47095 * 180.02562 * 5 2 1 37 37 H 1.09000 * 117.50555 * 145.02918 * 8 6 5 38 38 H 1.09005 * 117.49403 * 0.02562 * 8 6 5 39 39 H 0.97006 * 120.00028 * 359.72461 * 13 11 9 40 40 H 1.08996 * 109.47159 * 298.27579 * 14 13 11 41 41 H 1.09003 * 109.47134 * 58.27538 * 14 13 11 42 42 H 0.97005 * 119.99483 * 185.05685 * 19 18 16 43 43 H 1.08992 * 117.50058 * 0.02562 * 24 15 14 44 44 H 1.09008 * 117.49432 * 145.01954 * 24 15 14 45 45 H 1.08995 * 117.50280 * 214.98081 * 25 15 14 46 46 H 1.08999 * 117.49632 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1636 1.2494 7 1 1.3624 -2.6031 0.2660 8 6 0.5858 -2.5796 2.3792 9 6 2.0283 -3.0891 2.3612 10 1 2.7192 -2.6703 3.0927 11 6 2.2500 -4.5385 2.0129 12 8 2.0344 -4.9312 0.8858 13 7 2.6831 -5.3994 2.9551 14 6 2.8928 -6.8095 2.6181 15 6 3.4228 -7.5539 3.8453 16 6 2.4744 -7.6393 5.0133 17 1 2.5285 -6.9093 5.8074 18 6 1.5377 -8.6495 5.0683 19 7 1.3859 -9.4619 4.0451 20 14 0.4841 -8.8643 6.5958 21 1 0.8478 -7.8300 7.5973 22 1 -0.9487 -8.7207 6.2331 23 1 0.7162 -10.2135 7.1714 24 6 4.9161 -7.4317 4.1552 25 6 4.3535 -8.7437 3.6025 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2491 33 1 1.6767 -0.2075 -2.1391 34 1 3.1300 -0.7209 -1.2493 35 1 1.6766 -0.2073 2.1393 36 1 3.1299 -0.7208 1.2496 37 1 -0.2029 -3.2927 2.1392 38 1 0.3274 -1.8253 3.1225 39 1 2.8559 -5.0852 3.8564 40 1 1.9476 -7.2526 2.3045 41 1 3.6166 -6.8854 1.8065 42 1 0.6783 -10.1255 4.0536 43 1 5.5209 -6.8208 3.4851 44 1 5.2126 -7.4136 5.2040 45 1 4.2802 -9.5881 4.2877 46 1 4.5880 -8.9964 2.5685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592628571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:20 Heat of formation + Delta-G solvation = -20.234032 kcal Electronic energy + Delta-G solvation = -21945.001045 eV Core-core repulsion = 18835.026906 eV Total energy + Delta-G solvation = -3109.974139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.67115 -38.14680 -36.73018 -35.35004 -33.20909 -31.97681 -27.98565 -27.41284 -27.34981 -26.51833 -25.34216 -23.00378 -21.23775 -21.01093 -19.59974 -19.09740 -18.77073 -16.92635 -16.09812 -15.33556 -14.89009 -14.73247 -14.61899 -14.52589 -14.24117 -13.87706 -13.49723 -13.23701 -12.88049 -12.65910 -12.38941 -12.11370 -11.83016 -11.80232 -11.75899 -11.62158 -11.53309 -11.03162 -11.01394 -10.91901 -10.85415 -10.53163 -10.50914 -10.27930 -10.06389 -9.87027 -9.65032 -9.23442 -8.96810 -8.51172 -8.26684 -8.06113 -6.08905 -4.17528 3.04797 3.24054 3.33130 3.35314 3.76124 4.09941 4.34503 4.57401 4.66790 4.72850 5.01242 5.05103 5.10078 5.19505 5.31441 5.34192 5.44682 5.47863 5.52247 5.56084 5.67188 5.72137 5.76333 5.79968 5.82799 5.94738 5.98406 6.02525 6.12670 6.16139 6.25339 6.27133 6.33294 6.46550 6.48746 6.57210 6.68705 6.89510 7.08622 7.31097 7.43053 7.48307 7.80672 8.32946 8.35648 8.83356 8.94087 9.49368 10.98974 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.003483 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.733377 B = 8037.223317 C = 8569.861278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.079 4.079 6 C -0.120 4.120 7 H 0.120 0.880 8 C -0.150 4.150 9 C -0.186 4.186 10 H 0.118 0.882 11 C 0.532 3.468 12 O -0.560 6.560 13 N -0.699 5.699 14 C 0.163 3.837 15 C 0.028 3.972 16 C -0.500 4.500 17 H 0.061 0.939 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.400 0.600 40 H 0.071 0.929 41 H 0.036 0.964 42 H 0.261 0.739 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 17.929 -4.827 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.116 4.116 6 C -0.139 4.139 7 H 0.138 0.862 8 C -0.187 4.187 9 C -0.207 4.207 10 H 0.136 0.864 11 C 0.317 3.683 12 O -0.440 6.440 13 N -0.346 5.346 14 C 0.040 3.960 15 C 0.027 3.973 16 C -0.538 4.538 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.234 0.766 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.394 17.398 -5.658 18.299 hybrid contribution -0.494 -0.240 1.344 1.452 sum -0.100 17.158 -4.314 17.693 Atomic orbital electron populations 1.21880 0.94498 1.02289 1.01167 1.20506 0.95846 0.94972 0.95356 1.21874 1.00899 0.95535 1.01521 1.21956 1.00988 1.00862 0.96486 1.21271 1.00367 0.92566 0.97403 1.22466 1.01778 0.94290 0.95323 0.86199 1.23055 0.91615 1.02823 1.01235 1.22326 1.00097 0.93662 1.04622 0.86428 1.19568 0.77231 0.86387 0.85081 1.90636 1.52797 1.79106 1.21433 1.45906 1.65693 1.09944 1.13085 1.20987 1.00440 0.78497 0.96043 1.19036 0.87225 0.96599 0.94432 1.20383 1.16923 1.11913 1.04546 0.92129 1.24996 0.96944 0.95117 0.96021 1.69995 1.31275 1.20274 1.29483 0.86573 0.80122 0.78101 0.83428 1.19691 1.21022 1.20949 1.23024 0.99656 1.02273 0.99855 1.22492 1.05064 0.92065 0.99015 0.92877 0.93132 0.92000 0.92754 0.92788 0.92805 0.91790 0.93023 0.92737 0.91722 0.91498 0.88421 0.88248 0.76569 0.91046 0.94564 0.92899 0.91659 0.90349 0.89816 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.23 37.16 0.31 -0.94 16 2 C -0.07 -0.60 0.80 -154.51 -0.12 -0.72 16 3 C -0.14 -1.09 8.47 37.16 0.31 -0.77 16 4 C -0.15 -1.41 8.23 37.16 0.31 -1.10 16 5 C -0.08 -0.77 4.55 -26.73 -0.12 -0.90 16 6 C -0.12 -1.49 3.76 -90.62 -0.34 -1.84 16 7 H 0.12 1.72 5.58 -51.92 -0.29 1.43 16 8 C -0.15 -1.87 9.88 -26.73 -0.26 -2.14 16 9 C -0.19 -2.64 5.91 -91.77 -0.54 -3.18 16 10 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 11 C 0.53 10.14 7.61 -10.98 -0.08 10.06 16 12 O -0.56 -12.66 16.26 5.56 0.09 -12.57 16 13 N -0.70 -13.83 5.47 -60.29 -0.33 -14.16 16 14 C 0.16 3.77 5.50 -4.04 -0.02 3.75 16 15 C 0.03 0.66 1.38 -155.66 -0.21 0.44 16 16 C -0.50 -12.89 8.63 -34.44 -0.30 -13.18 16 17 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 18 C 0.07 1.95 5.39 -17.81 -0.10 1.85 16 19 N -0.87 -24.35 12.91 55.43 0.72 -23.63 16 20 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 25 C -0.15 -3.41 9.42 -26.69 -0.25 -3.66 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.61 7.20 -51.93 -0.37 0.23 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.71 6.14 -51.93 -0.32 0.39 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 39 H 0.40 7.25 8.37 -40.82 -0.34 6.91 16 40 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 41 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 42 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.08 1.60 8.14 -51.92 -0.42 1.18 16 45 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 46 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -29.03 372.80 -9.08 -38.12 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -8.46 Total: 8.08 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.70 Total: -16.99 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.39 Total: -37.79 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.03 -9.08 -38.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592628571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.881 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds