Wall clock time and date at job start Tue Mar 31 2020 01:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47044 * 2 1 4 4 C 1.52995 * 109.47166 * 239.99572 * 2 1 3 5 5 C 1.53005 * 109.47050 * 119.99576 * 2 1 3 6 6 C 1.52994 * 109.46980 * 59.99849 * 5 2 1 7 7 H 1.09009 * 115.55161 * 29.32982 * 6 5 2 8 8 C 1.52998 * 117.52383 * 243.63118 * 6 5 2 9 9 C 1.53000 * 117.50096 * 174.99883 * 6 5 2 10 10 H 1.08992 * 117.49714 * 0.02562 * 9 6 5 11 11 C 1.50705 * 117.50069 * 215.00481 * 9 6 5 12 12 O 1.21280 * 119.99799 * 0.02562 * 11 9 6 13 13 N 1.34773 * 120.00064 * 180.27450 * 11 9 6 14 14 C 1.46496 * 120.00252 * 179.72402 * 13 11 9 15 15 C 1.53004 * 109.47261 * 178.27408 * 14 13 11 16 16 C 1.50695 * 115.54756 * 65.14139 * 15 14 13 17 17 H 1.07998 * 120.00341 * 265.40094 * 16 15 14 18 18 C 1.37880 * 120.00089 * 85.40854 * 16 15 14 19 19 N 1.31524 * 119.99648 * 353.54924 * 18 16 15 20 20 Si 1.86797 * 120.00256 * 173.55181 * 18 16 15 21 21 H 1.48497 * 109.46925 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47220 * 120.00031 * 20 18 16 23 23 H 1.48508 * 109.46810 * 239.99839 * 20 18 16 24 24 C 1.53002 * 117.49610 * 279.47086 * 15 14 13 25 25 C 1.53002 * 117.49907 * 210.81212 * 15 14 13 26 26 H 1.08998 * 109.46947 * 300.00573 * 1 2 3 27 27 H 1.08997 * 109.46781 * 60.00016 * 1 2 3 28 28 H 1.08994 * 109.47029 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46796 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47173 * 299.99307 * 3 2 1 31 31 H 1.08998 * 109.47717 * 59.99898 * 3 2 1 32 32 H 1.08994 * 109.47330 * 300.00041 * 4 2 1 33 33 H 1.08997 * 109.46934 * 60.00505 * 4 2 1 34 34 H 1.09000 * 109.46950 * 179.97438 * 4 2 1 35 35 H 1.08999 * 109.47009 * 300.00286 * 5 2 1 36 36 H 1.08991 * 109.47095 * 180.02562 * 5 2 1 37 37 H 1.09000 * 117.50555 * 145.02918 * 8 6 5 38 38 H 1.09005 * 117.49403 * 0.02562 * 8 6 5 39 39 H 0.97006 * 120.00028 * 359.72461 * 13 11 9 40 40 H 1.08996 * 109.47159 * 298.27579 * 14 13 11 41 41 H 1.09003 * 109.47134 * 58.27538 * 14 13 11 42 42 H 0.97005 * 119.99483 * 185.05685 * 19 18 16 43 43 H 1.08992 * 117.50058 * 0.02562 * 24 15 14 44 44 H 1.09008 * 117.49432 * 145.01954 * 24 15 14 45 45 H 1.08995 * 117.50280 * 214.98081 * 25 15 14 46 46 H 1.08999 * 117.49632 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7212 1.2493 6 6 1.5300 -2.1636 1.2494 7 1 1.3624 -2.6031 0.2660 8 6 0.5858 -2.5796 2.3792 9 6 2.0283 -3.0891 2.3612 10 1 2.7192 -2.6703 3.0927 11 6 2.2500 -4.5385 2.0129 12 8 2.0344 -4.9312 0.8858 13 7 2.6831 -5.3994 2.9551 14 6 2.8928 -6.8095 2.6181 15 6 3.4228 -7.5539 3.8453 16 6 2.4744 -7.6393 5.0133 17 1 2.5285 -6.9093 5.8074 18 6 1.5377 -8.6495 5.0683 19 7 1.3859 -9.4619 4.0451 20 14 0.4841 -8.8643 6.5958 21 1 0.8478 -7.8300 7.5973 22 1 -0.9487 -8.7207 6.2331 23 1 0.7162 -10.2135 7.1714 24 6 4.9161 -7.4317 4.1552 25 6 4.3535 -8.7437 3.6025 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2491 33 1 1.6767 -0.2075 -2.1391 34 1 3.1300 -0.7209 -1.2493 35 1 1.6766 -0.2073 2.1393 36 1 3.1299 -0.7208 1.2496 37 1 -0.2029 -3.2927 2.1392 38 1 0.3274 -1.8253 3.1225 39 1 2.8559 -5.0852 3.8564 40 1 1.9476 -7.2526 2.3045 41 1 3.6166 -6.8854 1.8065 42 1 0.6783 -10.1255 4.0536 43 1 5.5209 -6.8208 3.4851 44 1 5.2126 -7.4136 5.2040 45 1 4.2802 -9.5881 4.2877 46 1 4.5880 -8.9964 2.5685 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592628571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:18 Heat of formation + Delta-G solvation = -35.247896 kcal Electronic energy + Delta-G solvation = -21945.652095 eV Core-core repulsion = 18835.026906 eV Total energy + Delta-G solvation = -3110.625189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02753 -39.28727 -38.40150 -36.41605 -34.92301 -33.97726 -29.07790 -28.15894 -28.05077 -27.99388 -27.23713 -24.35337 -22.97149 -22.03622 -21.35449 -20.66562 -19.57116 -18.42940 -17.82933 -16.80839 -16.67236 -16.15080 -15.84371 -15.55661 -15.40075 -15.22374 -14.83308 -14.47562 -14.13994 -13.87976 -13.64970 -13.49933 -13.16577 -13.06012 -12.94408 -12.85089 -12.56991 -12.53210 -12.34227 -12.32951 -12.06299 -11.86268 -11.59271 -11.50185 -11.29583 -11.06728 -10.91739 -10.86717 -10.74046 -10.47477 -10.05724 -9.83686 -8.11144 -6.24570 1.40575 1.44156 1.53784 1.60717 2.31984 2.42479 2.94592 3.17097 3.46094 3.69769 3.78960 3.91944 4.05932 4.09621 4.17571 4.23951 4.32045 4.50706 4.53541 4.62848 4.70731 4.73837 4.76732 4.81653 4.88417 4.95150 4.97619 5.00364 5.02341 5.03087 5.09626 5.15832 5.20190 5.24944 5.30027 5.39339 5.49982 5.56253 5.57846 5.58725 5.62130 5.68075 5.77055 6.35249 6.77855 6.84268 7.39642 7.45350 8.96653 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.003483 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.733377 B = 8037.223317 C = 8569.861278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.146 4.146 5 C -0.073 4.073 6 C -0.110 4.110 7 H 0.095 0.905 8 C -0.140 4.140 9 C -0.194 4.194 10 H 0.148 0.852 11 C 0.526 3.474 12 O -0.603 6.603 13 N -0.695 5.695 14 C 0.179 3.821 15 C 0.006 3.994 16 C -0.504 4.504 17 H 0.065 0.935 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.951 3.049 21 H -0.260 1.260 22 H -0.287 1.287 23 H -0.285 1.285 24 C -0.175 4.175 25 C -0.161 4.161 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.411 0.589 40 H 0.026 0.974 41 H 0.032 0.968 42 H 0.258 0.742 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 20.752 -3.289 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.066 4.066 3 C -0.195 4.195 4 C -0.204 4.204 5 C -0.110 4.110 6 C -0.128 4.128 7 H 0.113 0.887 8 C -0.177 4.177 9 C -0.215 4.215 10 H 0.166 0.834 11 C 0.314 3.686 12 O -0.485 6.485 13 N -0.343 5.343 14 C 0.055 3.945 15 C 0.005 3.995 16 C -0.542 4.542 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.547 5.547 20 Si 0.777 3.223 21 H -0.183 1.183 22 H -0.214 1.214 23 H -0.211 1.211 24 C -0.212 4.212 25 C -0.199 4.199 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.247 0.753 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.884 20.250 -4.091 20.678 hybrid contribution -0.639 -1.130 0.793 1.521 sum 0.245 19.120 -3.298 19.404 Atomic orbital electron populations 1.21872 0.94406 1.01467 1.02015 1.20512 0.95911 0.95761 0.94434 1.21835 1.01048 0.94298 1.02275 1.21961 1.00924 0.99865 0.97619 1.21289 1.00538 0.90592 0.98605 1.22472 1.01156 0.95381 0.93836 0.88727 1.23163 0.89951 1.02687 1.01901 1.22338 1.02134 0.90361 1.06675 0.83389 1.20457 0.75679 0.88290 0.84143 1.90614 1.54346 1.80330 1.23258 1.45815 1.65943 1.08703 1.13865 1.20543 0.97891 0.80252 0.95814 1.19052 0.88647 0.97611 0.94185 1.20700 1.16925 1.11538 1.04996 0.91681 1.25738 0.98448 0.95143 0.98423 1.70126 1.32058 1.21100 1.31389 0.85611 0.78206 0.78047 0.80406 1.18337 1.21363 1.21116 1.23013 0.97376 1.00099 1.00759 1.22434 1.06164 0.92219 0.99060 0.91789 0.92580 0.93628 0.92520 0.92319 0.91817 0.93936 0.92207 0.92800 0.89769 0.91162 0.90458 0.84873 0.75348 0.95560 0.94933 0.93253 0.89369 0.89355 0.91733 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.23 71.98 0.59 -1.63 16 2 C -0.07 -1.05 0.80 -52.18 -0.04 -1.10 16 3 C -0.14 -1.72 8.47 71.98 0.61 -1.11 16 4 C -0.15 -2.74 8.23 71.98 0.59 -2.14 16 5 C -0.07 -1.24 4.55 30.59 0.14 -1.10 16 6 C -0.11 -2.60 3.76 -10.80 -0.04 -2.64 16 7 H 0.09 2.79 5.58 -2.38 -0.01 2.77 16 8 C -0.14 -3.24 9.88 30.59 0.30 -2.94 16 9 C -0.19 -5.19 5.91 -11.54 -0.07 -5.26 16 10 H 0.15 3.06 8.14 -2.39 -0.02 3.04 16 11 C 0.53 20.16 7.61 87.66 0.67 20.83 16 12 O -0.60 -28.26 16.26 -3.03 -0.05 -28.31 16 13 N -0.70 -27.43 5.47 -463.06 -2.54 -29.96 16 14 C 0.18 8.46 5.50 86.38 0.48 8.94 16 15 C 0.01 0.27 1.38 -52.93 -0.07 0.20 16 16 C -0.50 -25.81 8.63 25.60 0.22 -25.59 16 17 H 0.07 3.21 7.82 -2.91 -0.02 3.18 16 18 C 0.02 1.23 5.39 84.65 0.46 1.68 16 19 N -0.91 -51.93 12.91 21.45 0.28 -51.65 16 20 Si 0.95 42.26 29.55 68.60 2.03 44.28 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 22 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 C -0.18 -7.00 9.96 30.62 0.30 -6.69 16 25 C -0.16 -7.40 9.42 30.62 0.29 -7.11 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.04 0.86 7.20 -2.39 -0.02 0.85 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.97 6.14 -2.39 -0.01 0.95 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.14 7.88 -2.39 -0.02 1.12 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.13 2.21 8.03 -2.38 -0.02 2.19 16 39 H 0.41 14.36 8.37 -92.70 -0.78 13.58 16 40 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.03 1.53 8.09 -2.39 -0.02 1.51 16 42 H 0.26 14.23 8.32 -92.70 -0.77 13.46 16 43 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 45 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -64.19 372.80 4.30 -59.89 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.16 Total: 31.40 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 4.43 Total: -25.65 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -2.26 Total: -81.62 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -64.19 4.30 -59.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592628571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.641 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds