Wall clock time and date at job start Tue Mar 31 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.52994 * 109.47344 * 239.99599 * 2 1 3 5 5 C 1.50699 * 109.47364 * 60.00442 * 4 2 1 6 6 H 1.08003 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00241 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99999 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46864 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47217 * 119.99791 * 9 7 5 12 12 H 1.48498 * 109.46894 * 239.99744 * 9 7 5 13 13 C 1.53003 * 109.46810 * 119.99542 * 2 1 3 14 14 N 1.46500 * 109.47426 * 299.99945 * 13 2 1 15 15 C 1.34770 * 120.00170 * 179.97438 * 14 13 2 16 16 O 1.21281 * 120.00141 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00151 * 180.02562 * 15 14 13 18 18 C 1.53950 * 113.57771 * 80.75936 * 17 15 14 19 19 C 1.53159 * 86.69660 * 139.37686 * 18 17 15 20 20 C 1.52906 * 121.13989 * 100.81522 * 19 18 17 21 21 C 1.53949 * 86.78398 * 100.82555 * 20 19 18 22 22 C 1.52908 * 121.14128 * 209.38149 * 19 18 17 23 23 C 1.52914 * 88.03442 * 335.09777 * 19 18 17 24 24 H 1.09000 * 109.47454 * 300.00149 * 1 2 3 25 25 H 1.08999 * 109.47121 * 60.00685 * 1 2 3 26 26 H 1.09006 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47338 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47064 * 299.99719 * 3 2 1 29 29 H 1.08995 * 109.47790 * 59.99508 * 3 2 1 30 30 H 1.09001 * 109.47305 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47182 * 299.99963 * 4 2 1 32 32 H 0.97003 * 119.99532 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46825 * 180.02562 * 13 2 1 34 34 H 1.09004 * 109.47231 * 60.00333 * 13 2 1 35 35 H 0.96996 * 119.99481 * 0.02562 * 14 13 2 36 36 H 1.09002 * 112.82235 * 309.66867 * 17 15 14 37 37 H 1.09004 * 113.66202 * 253.88712 * 18 17 15 38 38 H 1.08998 * 113.66740 * 24.93903 * 18 17 15 39 39 H 1.08998 * 113.66290 * 215.29885 * 20 19 18 40 40 H 1.08999 * 113.66439 * 346.35096 * 20 19 18 41 41 H 1.09000 * 113.57955 * 270.13047 * 21 20 19 42 42 H 1.08999 * 113.65113 * 139.34661 * 21 20 19 43 43 H 1.09002 * 113.66204 * 13.64659 * 22 19 18 44 44 H 1.09003 * 113.66133 * 144.69680 * 22 19 18 45 45 H 1.08995 * 113.66233 * 270.42754 * 23 19 18 46 46 H 1.08998 * 113.74404 * 139.37723 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3807 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8524 9 14 1.2474 0.3978 -5.2572 10 1 0.4220 1.5642 -4.8531 11 1 2.4021 0.8643 -6.0660 12 1 0.4222 -0.5359 -6.0650 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0305 2.4455 15 6 1.8766 -0.4912 3.6696 16 8 2.5739 -1.4773 3.7810 17 6 1.3738 0.2190 4.9000 18 6 -0.0755 -0.1438 5.2713 19 6 0.3944 -0.1545 6.7290 20 6 0.1231 1.0310 7.6559 21 6 -1.0360 0.2006 8.2362 22 6 -0.2750 -1.0535 7.7691 23 6 1.8044 -0.4516 6.2172 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7217 -1.2489 31 1 1.6767 -1.7490 -1.2491 32 1 2.8609 -1.8831 -4.7335 33 1 3.1299 -0.7208 1.2496 34 1 1.6765 -1.7489 1.2494 35 1 0.9936 0.7579 2.3564 36 1 1.5620 1.2923 4.8752 37 1 -0.7947 0.6442 5.0480 38 1 -0.3892 -1.1215 4.9056 39 1 0.9251 1.2210 8.3692 40 1 -0.2020 1.9301 7.1326 41 1 -1.9834 0.3534 7.7193 42 1 -1.1285 0.2761 9.3197 43 1 -0.9182 -1.8196 7.3361 44 1 0.4152 -1.4494 8.5142 45 1 2.0182 -1.5156 6.1170 46 1 2.5872 0.0900 6.7482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592631249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:40 Heat of formation + Delta-G solvation = -24.334961 kcal Electronic energy + Delta-G solvation = -22069.190268 eV Core-core repulsion = 18959.038299 eV Total energy + Delta-G solvation = -3110.151969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.95492 -39.05791 -37.07697 -34.72042 -33.54353 -32.04809 -27.39114 -26.80667 -26.51390 -26.02262 -25.93135 -24.93456 -22.92318 -21.63946 -19.83713 -18.22790 -18.17199 -16.96861 -16.34144 -15.83577 -15.66080 -15.29276 -14.78458 -14.50364 -14.36722 -13.59125 -13.17155 -13.14362 -12.98202 -12.74681 -12.60331 -12.35500 -12.28038 -12.06965 -11.96460 -11.24631 -11.17476 -11.07309 -11.02085 -10.83948 -10.64798 -10.50335 -10.40224 -10.32117 -10.24238 -10.19551 -9.87871 -9.57666 -9.12161 -8.90786 -8.67919 -8.36647 -6.00424 -4.01680 2.84206 3.29623 3.37636 3.39809 3.49849 4.13226 4.24171 4.36170 4.44809 4.52884 4.53450 4.59293 5.13820 5.16664 5.22098 5.35179 5.39485 5.46367 5.51366 5.55267 5.62354 5.63337 5.64554 5.71503 5.73662 5.75524 5.82376 6.08287 6.17307 6.18655 6.22973 6.28057 6.32225 6.39977 6.59082 6.62790 6.79376 7.06406 7.07183 7.13276 7.64098 7.76235 7.81139 7.98573 8.40015 8.50049 9.03424 9.61536 11.11105 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.041428 B = 0.002966 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.705602 B = 9439.571583 C = 9691.203255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.720 5.720 15 C 0.515 3.485 16 O -0.547 6.547 17 C -0.135 4.135 18 C -0.097 4.097 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.128 4.128 23 C -0.102 4.102 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.398 0.602 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 5.971 21.853 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.371 5.371 15 C 0.301 3.699 16 O -0.424 6.424 17 C -0.157 4.157 18 C -0.134 4.134 19 C -0.108 4.108 20 C -0.154 4.154 21 C -0.178 4.178 22 C -0.165 4.165 23 C -0.140 4.140 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.233 0.767 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.115 0.885 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.942 5.144 21.776 23.151 hybrid contribution -0.481 0.796 -1.132 1.465 sum -6.423 5.941 20.644 22.422 Atomic orbital electron populations 1.21755 0.95302 1.01115 1.00207 1.20893 0.95447 0.95831 0.95091 1.21757 1.00518 0.95920 1.00202 1.19097 0.96358 0.95228 0.89535 1.21220 1.31069 1.12033 0.90510 0.92209 1.25021 0.95339 0.95087 0.99108 1.69979 1.37025 1.23068 1.23326 0.86594 0.78608 0.79673 0.83454 1.19801 1.21128 1.21134 1.21618 0.98842 0.95999 0.83121 1.46231 1.53066 1.31906 1.05922 1.20446 0.80213 0.84682 0.84560 1.90677 1.38208 1.26692 1.86872 1.22730 0.98345 1.01046 0.93548 1.22628 0.94418 1.02562 0.93815 1.22475 0.96787 0.97911 0.93603 1.22656 0.98468 0.96280 0.97981 1.22823 0.97707 0.96781 1.00460 1.22745 0.99066 0.96484 0.98193 1.22677 0.95682 1.02150 0.93451 0.95241 0.91460 0.93414 0.93399 0.91449 0.95262 0.96360 0.96366 0.93095 0.91935 0.91959 0.76724 0.87273 0.90603 0.89294 0.89823 0.91311 0.90260 0.91630 0.91369 0.89944 0.88533 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 2 C -0.07 -1.37 0.54 -154.52 -0.08 -1.45 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.54 7.65 -34.44 -0.26 -13.81 16 6 H 0.06 1.53 5.68 -52.48 -0.30 1.23 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 N -0.72 -10.49 4.96 -60.29 -0.30 -10.79 16 15 C 0.52 7.68 7.35 -10.99 -0.08 7.60 16 16 O -0.55 -10.41 15.90 5.56 0.09 -10.32 16 17 C -0.14 -1.45 4.14 -90.79 -0.38 -1.83 16 18 C -0.10 -0.90 7.41 -26.15 -0.19 -1.09 16 19 C -0.11 -0.92 1.11 -154.58 -0.17 -1.09 16 20 C -0.12 -0.83 7.84 -26.28 -0.21 -1.03 16 21 C -0.14 -0.95 8.08 -25.75 -0.21 -1.16 16 22 C -0.13 -1.00 7.84 -26.28 -0.21 -1.21 16 23 C -0.10 -1.06 7.16 -26.28 -0.19 -1.25 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 25 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 4.89 6.16 -40.82 -0.25 4.64 16 36 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.10 1.19 7.44 -51.93 -0.39 0.81 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -30.59 359.07 -8.93 -39.52 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.23 Total: 1.46 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.61 Total: -15.69 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.44 Total: -36.55 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.59 -8.93 -39.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592631249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.183 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds