Wall clock time and date at job start Tue Mar 31 2020 01:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.52994 * 109.47344 * 239.99599 * 2 1 3 5 5 C 1.50699 * 109.47364 * 60.00442 * 4 2 1 6 6 H 1.08003 * 119.99841 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00241 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99999 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46864 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47217 * 119.99791 * 9 7 5 12 12 H 1.48498 * 109.46894 * 239.99744 * 9 7 5 13 13 C 1.53003 * 109.46810 * 119.99542 * 2 1 3 14 14 N 1.46500 * 109.47426 * 299.99945 * 13 2 1 15 15 C 1.34770 * 120.00170 * 179.97438 * 14 13 2 16 16 O 1.21281 * 120.00141 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00151 * 180.02562 * 15 14 13 18 18 C 1.53950 * 113.57771 * 80.75936 * 17 15 14 19 19 C 1.53159 * 86.69660 * 139.37686 * 18 17 15 20 20 C 1.52906 * 121.13989 * 100.81522 * 19 18 17 21 21 C 1.53949 * 86.78398 * 100.82555 * 20 19 18 22 22 C 1.52908 * 121.14128 * 209.38149 * 19 18 17 23 23 C 1.52914 * 88.03442 * 335.09777 * 19 18 17 24 24 H 1.09000 * 109.47454 * 300.00149 * 1 2 3 25 25 H 1.08999 * 109.47121 * 60.00685 * 1 2 3 26 26 H 1.09006 * 109.47416 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47338 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47064 * 299.99719 * 3 2 1 29 29 H 1.08995 * 109.47790 * 59.99508 * 3 2 1 30 30 H 1.09001 * 109.47305 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47182 * 299.99963 * 4 2 1 32 32 H 0.97003 * 119.99532 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46825 * 180.02562 * 13 2 1 34 34 H 1.09004 * 109.47231 * 60.00333 * 13 2 1 35 35 H 0.96996 * 119.99481 * 0.02562 * 14 13 2 36 36 H 1.09002 * 112.82235 * 309.66867 * 17 15 14 37 37 H 1.09004 * 113.66202 * 253.88712 * 18 17 15 38 38 H 1.08998 * 113.66740 * 24.93903 * 18 17 15 39 39 H 1.08998 * 113.66290 * 215.29885 * 20 19 18 40 40 H 1.08999 * 113.66439 * 346.35096 * 20 19 18 41 41 H 1.09000 * 113.57955 * 270.13047 * 21 20 19 42 42 H 1.08999 * 113.65113 * 139.34661 * 21 20 19 43 43 H 1.09002 * 113.66204 * 13.64659 * 22 19 18 44 44 H 1.09003 * 113.66133 * 144.69680 * 22 19 18 45 45 H 1.08995 * 113.66233 * 270.42754 * 23 19 18 46 46 H 1.08998 * 113.74404 * 139.37723 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9166 0.8669 -2.3807 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8524 9 14 1.2474 0.3978 -5.2572 10 1 0.4220 1.5642 -4.8531 11 1 2.4021 0.8643 -6.0660 12 1 0.4222 -0.5359 -6.0650 13 6 2.0399 -0.7212 1.2493 14 7 1.5515 -0.0305 2.4455 15 6 1.8766 -0.4912 3.6696 16 8 2.5739 -1.4773 3.7810 17 6 1.3738 0.2190 4.9000 18 6 -0.0755 -0.1438 5.2713 19 6 0.3944 -0.1545 6.7290 20 6 0.1231 1.0310 7.6559 21 6 -1.0360 0.2006 8.2362 22 6 -0.2750 -1.0535 7.7691 23 6 1.8044 -0.4516 6.2172 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7217 -1.2489 31 1 1.6767 -1.7490 -1.2491 32 1 2.8609 -1.8831 -4.7335 33 1 3.1299 -0.7208 1.2496 34 1 1.6765 -1.7489 1.2494 35 1 0.9936 0.7579 2.3564 36 1 1.5620 1.2923 4.8752 37 1 -0.7947 0.6442 5.0480 38 1 -0.3892 -1.1215 4.9056 39 1 0.9251 1.2210 8.3692 40 1 -0.2020 1.9301 7.1326 41 1 -1.9834 0.3534 7.7193 42 1 -1.1285 0.2761 9.3197 43 1 -0.9182 -1.8196 7.3361 44 1 0.4152 -1.4494 8.5142 45 1 2.0182 -1.5156 6.1170 46 1 2.5872 0.0900 6.7482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592631249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:39 Heat of formation + Delta-G solvation = -41.374730 kcal Electronic energy + Delta-G solvation = -22069.929168 eV Core-core repulsion = 18959.038299 eV Total energy + Delta-G solvation = -3110.890869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81145 -40.21169 -38.58097 -35.50508 -35.22508 -33.87562 -29.22381 -28.20785 -27.96175 -26.73071 -26.60167 -26.09432 -24.61811 -22.58305 -21.00420 -19.72485 -18.85848 -18.38255 -18.10080 -16.88244 -16.67107 -16.43455 -16.06105 -15.95328 -15.56885 -15.01814 -14.75323 -14.45138 -13.95273 -13.92752 -13.82371 -13.64796 -13.44503 -12.98500 -12.93186 -12.83192 -12.69798 -12.58386 -12.34725 -12.23459 -11.96100 -11.89300 -11.77169 -11.54302 -11.24223 -11.09000 -10.96690 -10.93094 -10.86793 -10.53010 -10.45987 -10.04497 -8.14683 -6.22664 1.41588 1.42491 1.54407 1.65674 2.27520 2.45087 3.19917 3.44160 3.52815 3.62423 3.72467 3.88245 3.96994 4.01668 4.07725 4.22427 4.26665 4.44757 4.61742 4.69206 4.71577 4.75919 4.79456 4.83705 4.91014 4.95652 4.96456 5.03239 5.08635 5.10787 5.12388 5.13736 5.16849 5.36867 5.41387 5.48308 5.49568 5.53430 5.56275 5.58789 5.64963 5.79763 5.89479 6.29635 6.63788 6.92977 7.31461 7.45348 8.98207 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.041428 B = 0.002966 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.705602 B = 9439.571583 C = 9691.203255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.255 1.255 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.140 3.860 14 N -0.707 5.707 15 C 0.512 3.488 16 O -0.594 6.594 17 C -0.128 4.128 18 C -0.092 4.092 19 C -0.104 4.104 20 C -0.110 4.110 21 C -0.135 4.135 22 C -0.135 4.135 23 C -0.109 4.109 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.071 0.929 30 H -0.016 1.016 31 H -0.016 1.016 32 H 0.259 0.741 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.414 0.586 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 9.058 23.316 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.016 3.984 14 N -0.359 5.359 15 C 0.300 3.700 16 O -0.475 6.475 17 C -0.149 4.149 18 C -0.130 4.130 19 C -0.104 4.104 20 C -0.147 4.147 21 C -0.172 4.172 22 C -0.172 4.172 23 C -0.147 4.147 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.003 0.997 31 H 0.002 0.998 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.252 0.748 36 H 0.157 0.843 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.028 8.274 23.257 25.958 hybrid contribution 0.205 -0.245 -1.534 1.567 sum -7.822 8.029 21.723 24.444 Atomic orbital electron populations 1.21688 0.93478 1.00896 1.01745 1.20695 0.96775 0.96316 0.92639 1.21691 0.99840 0.94559 1.01754 1.18987 0.94209 0.94178 0.92532 1.21622 1.30289 1.12041 0.90989 0.90790 1.25976 0.95691 0.95877 1.02822 1.70138 1.38895 1.25066 1.24036 0.85473 0.78049 0.78838 0.79147 1.17881 1.21071 1.21084 1.21188 0.97561 0.95299 0.84360 1.46023 1.53029 1.32064 1.04802 1.21291 0.79081 0.84086 0.85518 1.90664 1.40365 1.28987 1.87522 1.22849 0.99230 1.01990 0.90784 1.22618 0.93778 1.02509 0.94087 1.22475 0.94963 0.99333 0.93604 1.22671 0.98604 0.95936 0.97484 1.22813 0.97715 0.95554 1.01136 1.22809 0.99287 0.96951 0.98167 1.22676 0.97477 1.00607 0.93934 0.90993 0.92500 0.94600 0.94566 0.92488 0.90993 0.99736 0.99754 0.93190 0.93971 0.94037 0.74819 0.84283 0.88158 0.90944 0.89206 0.90114 0.89782 0.90745 0.92020 0.89882 0.91356 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 2 C -0.06 -2.41 0.54 -52.19 -0.03 -2.44 16 3 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.44 7.65 25.60 0.20 -27.24 16 6 H 0.07 3.70 5.68 -2.91 -0.02 3.68 16 7 C -0.01 -0.40 5.46 84.65 0.46 0.07 16 8 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 9 Si 0.96 43.61 29.54 68.60 2.03 45.63 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 C 0.14 5.12 4.56 86.38 0.39 5.51 16 14 N -0.71 -19.47 4.96 -463.06 -2.30 -21.77 16 15 C 0.51 14.84 7.35 87.66 0.64 15.48 16 16 O -0.59 -23.26 15.90 -3.03 -0.05 -23.30 16 17 C -0.13 -2.42 4.14 -10.90 -0.05 -2.47 16 18 C -0.09 -1.47 7.41 30.97 0.23 -1.24 16 19 C -0.10 -1.53 1.11 -52.23 -0.06 -1.59 16 20 C -0.11 -1.16 7.84 30.88 0.24 -0.92 16 21 C -0.13 -1.43 8.08 31.23 0.25 -1.18 16 22 C -0.13 -1.89 7.84 30.88 0.24 -1.65 16 23 C -0.11 -2.14 7.16 30.89 0.22 -1.92 16 24 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 25 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 26 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 29 H 0.07 1.77 6.86 -2.39 -0.02 1.75 16 30 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.41 8.62 6.16 -92.71 -0.57 8.05 16 36 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.74 7.44 -2.39 -0.02 1.72 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -69.81 359.07 4.37 -65.44 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.37 Total: 15.68 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.03 Total: -24.38 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -2.01 Total: -79.07 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -69.81 4.37 -65.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592631249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.069 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds