Wall clock time and date at job start Tue Mar 31 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 N 1.46505 * 109.47064 * 125.00219 * 3 2 1 5 5 C 1.46493 * 119.99899 * 270.00279 * 4 3 2 6 6 C 1.50695 * 109.47443 * 90.00099 * 5 4 3 7 7 H 1.08001 * 120.00056 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00480 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00487 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46990 * 59.99741 * 10 8 6 12 12 H 1.48497 * 109.47011 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47086 * 300.00255 * 10 8 6 14 14 C 1.34773 * 119.99455 * 90.00114 * 4 3 2 15 15 O 1.21287 * 119.99667 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00755 * 0.02562 * 14 4 3 17 17 H 1.08999 * 115.54954 * 34.27458 * 16 14 4 18 18 C 1.52997 * 117.49837 * 248.61008 * 16 14 4 19 19 C 1.52993 * 60.00070 * 252.50490 * 18 16 14 20 20 H 1.09007 * 117.49830 * 107.48351 * 19 18 16 21 21 C 1.52994 * 117.50051 * 252.50851 * 19 18 16 22 22 C 1.52997 * 109.47436 * 243.61932 * 21 19 18 23 23 C 1.53003 * 109.46902 * 59.99986 * 22 21 19 24 24 C 1.53003 * 109.47346 * 180.02562 * 22 21 19 25 25 C 1.53001 * 109.47226 * 300.00378 * 22 21 19 26 26 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 30 30 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 31 31 H 1.09006 * 109.46911 * 209.99921 * 5 4 3 32 32 H 1.08996 * 109.47170 * 329.99434 * 5 4 3 33 33 H 0.97003 * 119.99687 * 180.02562 * 9 8 6 34 34 H 1.09002 * 117.49908 * 359.97438 * 18 16 14 35 35 H 1.09004 * 117.49746 * 144.99084 * 18 16 14 36 36 H 1.08997 * 109.47324 * 3.62801 * 21 19 18 37 37 H 1.09008 * 109.47179 * 123.62039 * 21 19 18 38 38 H 1.08999 * 109.46780 * 60.00403 * 23 22 21 39 39 H 1.08996 * 109.46896 * 179.97438 * 23 22 21 40 40 H 1.08994 * 109.47033 * 300.00312 * 23 22 21 41 41 H 1.09003 * 109.46847 * 60.00174 * 24 22 21 42 42 H 1.08995 * 109.47144 * 180.02562 * 24 22 21 43 43 H 1.08996 * 109.46969 * 300.00117 * 24 22 21 44 44 H 1.08994 * 109.47180 * 59.99400 * 25 22 21 45 45 H 1.08995 * 109.47104 * 179.97438 * 25 22 21 46 46 H 1.09003 * 109.47093 * 299.99903 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4248 6 6 1.9754 0.7517 3.2563 7 1 1.9323 -0.2523 2.8607 8 6 1.4964 1.0149 4.5221 9 7 1.5493 2.2374 5.0041 10 14 0.7723 -0.3648 5.5525 11 1 1.8015 -1.4132 5.7691 12 1 0.3328 0.1753 6.8641 13 1 -0.3922 -0.9533 4.8434 14 6 4.2497 0.8662 0.9822 15 8 5.0201 0.8887 1.9188 16 6 4.6973 0.3184 -0.3485 17 1 4.2712 0.8064 -1.2251 18 6 4.9683 -1.1847 -0.4386 19 6 6.1347 -0.1948 -0.4539 20 1 6.7568 -0.1362 0.4394 21 6 6.8647 0.0164 -1.7817 22 6 8.3159 -0.4488 -1.6457 23 6 8.3430 -1.9342 -1.2795 24 6 9.0460 -0.2370 -2.9735 25 6 9.0099 0.3598 -0.5479 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 3.4134 2.2975 2.9453 32 1 1.8032 2.6339 2.2654 33 1 1.2126 2.4225 5.8948 34 1 4.8232 -1.7773 0.4646 35 1 4.7204 -1.6855 -1.3746 36 1 6.3702 -0.5596 -2.5639 37 1 6.8454 1.0746 -2.0427 38 1 7.8485 -2.5102 -2.0616 39 1 9.3768 -2.2657 -1.1830 40 1 7.8229 -2.0846 -0.3335 41 1 9.0267 0.8213 -3.2339 42 1 10.0797 -0.5689 -2.8767 43 1 8.5517 -0.8128 -3.7558 44 1 8.4899 0.2093 0.3981 45 1 10.0436 0.0280 -0.4506 46 1 8.9906 1.4180 -0.8087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592800909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:24 Heat of formation + Delta-G solvation = -11.747167 kcal Electronic energy + Delta-G solvation = -22429.291919 eV Core-core repulsion = 19319.685798 eV Total energy + Delta-G solvation = -3109.606121 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.65455 -38.06671 -35.79578 -35.15699 -33.00046 -31.96464 -28.21238 -27.43101 -27.32454 -27.19615 -25.39505 -24.04449 -21.91098 -20.85035 -19.73289 -18.77038 -18.09376 -16.66243 -16.35617 -15.77210 -14.82110 -14.67338 -14.65059 -14.38012 -14.09979 -13.89519 -13.41293 -13.25967 -12.75193 -12.69122 -12.33182 -12.14158 -11.92076 -11.76020 -11.68870 -11.56702 -11.47496 -11.22796 -11.07120 -10.92620 -10.80553 -10.78010 -10.55458 -10.42945 -10.17288 -9.94199 -9.72352 -9.57689 -8.92282 -8.83133 -8.37726 -7.63898 -5.99501 -4.02631 2.70503 3.25274 3.34382 3.38319 3.41819 3.91570 4.23401 4.47713 4.63254 4.73346 4.78889 5.07037 5.09667 5.14878 5.32509 5.36694 5.40734 5.44421 5.51151 5.54222 5.59646 5.60874 5.72823 5.77187 5.79527 5.83357 5.85098 5.87528 6.01952 6.04286 6.07509 6.20427 6.23460 6.33017 6.33377 6.33616 6.58653 7.02321 7.07820 7.19489 7.47315 7.61340 7.97304 8.29064 8.46298 8.95944 9.15725 9.61566 11.08929 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.004166 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.059829 B = 6720.244118 C = 7234.302179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.152 4.152 3 C 0.142 3.858 4 N -0.591 5.591 5 C 0.247 3.753 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.534 3.466 15 O -0.542 6.542 16 C -0.185 4.185 17 H 0.116 0.884 18 C -0.150 4.150 19 C -0.122 4.122 20 H 0.120 0.880 21 C -0.077 4.077 22 C -0.066 4.066 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 -5.029 -17.297 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.171 4.171 3 C 0.018 3.982 4 N -0.322 5.322 5 C 0.128 3.872 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.321 3.679 15 O -0.419 6.419 16 C -0.206 4.206 17 H 0.134 0.866 18 C -0.188 4.188 19 C -0.141 4.141 20 H 0.138 0.862 21 C -0.115 4.115 22 C -0.066 4.066 23 C -0.198 4.198 24 C -0.198 4.198 25 C -0.203 4.203 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.572 -4.862 -16.604 19.309 hybrid contribution -0.750 -0.779 0.701 1.289 sum 7.822 -5.641 -15.904 18.599 Atomic orbital electron populations 1.23655 0.95842 1.01322 1.01405 1.23212 0.96152 0.98738 0.99030 1.20560 0.92558 0.95663 0.89441 1.48162 1.10057 1.60742 1.13193 1.19290 0.95754 0.94215 0.77965 1.21368 1.39304 0.95171 0.99731 0.92489 1.24914 0.96104 0.95618 0.97493 1.69925 1.47007 1.19122 1.17625 0.86604 0.79397 0.82308 0.79398 1.20283 1.21225 1.20277 1.19422 0.82186 0.78227 0.88055 1.90655 1.53452 1.56079 1.41756 1.22422 1.01292 0.98702 0.98215 0.86635 1.23016 1.02182 0.90401 1.03190 1.22461 0.89505 1.02129 0.99966 0.86216 1.21256 0.94044 1.01124 0.95040 1.20501 0.94812 0.95880 0.95451 1.21877 1.01224 0.94783 1.01926 1.21872 0.99958 1.01460 0.96506 1.21961 0.99839 0.99631 0.98905 0.88734 0.89098 0.87898 0.90448 0.90945 0.93887 0.95177 0.92779 0.88538 0.88506 0.91855 0.91581 0.92949 0.93174 0.91953 0.92767 0.92822 0.92865 0.91700 0.93060 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 14.32 29.01 0.42 -2.40 16 2 C -0.15 -2.48 9.85 -36.02 -0.35 -2.83 16 3 C 0.14 2.36 5.72 -5.19 -0.03 2.33 16 4 N -0.59 -12.73 2.44 -176.43 -0.43 -13.16 16 5 C 0.25 6.55 5.20 -5.20 -0.03 6.53 16 6 C -0.52 -14.81 9.39 -34.44 -0.32 -15.13 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 10 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 C 0.53 11.33 7.45 -10.99 -0.08 11.25 16 15 O -0.54 -13.88 15.84 5.55 0.09 -13.79 16 16 C -0.19 -2.83 5.01 -91.77 -0.46 -3.29 16 17 H 0.12 1.50 6.44 -51.93 -0.33 1.16 16 18 C -0.15 -2.01 9.88 -26.74 -0.26 -2.28 16 19 C -0.12 -1.65 3.77 -90.63 -0.34 -1.99 16 20 H 0.12 1.90 5.58 -51.93 -0.29 1.61 16 21 C -0.08 -0.81 4.55 -26.74 -0.12 -0.93 16 22 C -0.07 -0.64 0.80 -154.51 -0.12 -0.77 16 23 C -0.14 -1.34 8.23 37.16 0.31 -1.04 16 24 C -0.14 -1.15 8.47 37.16 0.31 -0.84 16 25 C -0.15 -1.55 8.23 37.16 0.31 -1.24 16 26 H 0.09 1.38 7.84 -52.49 -0.41 0.97 16 27 H 0.09 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.08 1.26 7.54 -51.93 -0.39 0.87 16 30 H 0.07 0.97 5.99 -51.93 -0.31 0.66 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 36 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 37 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.67 7.20 -51.93 -0.37 0.29 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.79 6.14 -51.93 -0.32 0.48 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -32.48 372.23 -8.15 -40.63 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.25 Total: 0.74 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.88 Total: -10.99 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.31 Total: -39.46 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.48 -8.15 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592800909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.880 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds