Wall clock time and date at job start Tue Mar 31 2020 01:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00002 * 2 1 4 4 N 1.46505 * 109.47064 * 125.00219 * 3 2 1 5 5 C 1.46493 * 119.99899 * 270.00279 * 4 3 2 6 6 C 1.50695 * 109.47443 * 90.00099 * 5 4 3 7 7 H 1.08001 * 120.00056 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00480 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00487 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46990 * 59.99741 * 10 8 6 12 12 H 1.48497 * 109.47011 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47086 * 300.00255 * 10 8 6 14 14 C 1.34773 * 119.99455 * 90.00114 * 4 3 2 15 15 O 1.21287 * 119.99667 * 179.97438 * 14 4 3 16 16 C 1.50702 * 120.00755 * 0.02562 * 14 4 3 17 17 H 1.08999 * 115.54954 * 34.27458 * 16 14 4 18 18 C 1.52997 * 117.49837 * 248.61008 * 16 14 4 19 19 C 1.52993 * 60.00070 * 252.50490 * 18 16 14 20 20 H 1.09007 * 117.49830 * 107.48351 * 19 18 16 21 21 C 1.52994 * 117.50051 * 252.50851 * 19 18 16 22 22 C 1.52997 * 109.47436 * 243.61932 * 21 19 18 23 23 C 1.53003 * 109.46902 * 59.99986 * 22 21 19 24 24 C 1.53003 * 109.47346 * 180.02562 * 22 21 19 25 25 C 1.53001 * 109.47226 * 300.00378 * 22 21 19 26 26 H 1.07996 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99862 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00097 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47152 * 5.00302 * 3 2 1 30 30 H 1.09001 * 109.46980 * 245.00403 * 3 2 1 31 31 H 1.09006 * 109.46911 * 209.99921 * 5 4 3 32 32 H 1.08996 * 109.47170 * 329.99434 * 5 4 3 33 33 H 0.97003 * 119.99687 * 180.02562 * 9 8 6 34 34 H 1.09002 * 117.49908 * 359.97438 * 18 16 14 35 35 H 1.09004 * 117.49746 * 144.99084 * 18 16 14 36 36 H 1.08997 * 109.47324 * 3.62801 * 21 19 18 37 37 H 1.09008 * 109.47179 * 123.62039 * 21 19 18 38 38 H 1.08999 * 109.46780 * 60.00403 * 23 22 21 39 39 H 1.08996 * 109.46896 * 179.97438 * 23 22 21 40 40 H 1.08994 * 109.47033 * 300.00312 * 23 22 21 41 41 H 1.09003 * 109.46847 * 60.00174 * 24 22 21 42 42 H 1.08995 * 109.47144 * 180.02562 * 24 22 21 43 43 H 1.08996 * 109.46969 * 300.00117 * 24 22 21 44 44 H 1.08994 * 109.47180 * 59.99400 * 25 22 21 45 45 H 1.08995 * 109.47104 * 179.97438 * 25 22 21 46 46 H 1.09003 * 109.47093 * 299.99903 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4248 6 6 1.9754 0.7517 3.2563 7 1 1.9323 -0.2523 2.8607 8 6 1.4964 1.0149 4.5221 9 7 1.5493 2.2374 5.0041 10 14 0.7723 -0.3648 5.5525 11 1 1.8015 -1.4132 5.7691 12 1 0.3328 0.1753 6.8641 13 1 -0.3922 -0.9533 4.8434 14 6 4.2497 0.8662 0.9822 15 8 5.0201 0.8887 1.9188 16 6 4.6973 0.3184 -0.3485 17 1 4.2712 0.8064 -1.2251 18 6 4.9683 -1.1847 -0.4386 19 6 6.1347 -0.1948 -0.4539 20 1 6.7568 -0.1362 0.4394 21 6 6.8647 0.0164 -1.7817 22 6 8.3159 -0.4488 -1.6457 23 6 8.3430 -1.9342 -1.2795 24 6 9.0460 -0.2370 -2.9735 25 6 9.0099 0.3598 -0.5479 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 3.4134 2.2975 2.9453 32 1 1.8032 2.6339 2.2654 33 1 1.2126 2.4225 5.8948 34 1 4.8232 -1.7773 0.4646 35 1 4.7204 -1.6855 -1.3746 36 1 6.3702 -0.5596 -2.5639 37 1 6.8454 1.0746 -2.0427 38 1 7.8485 -2.5102 -2.0616 39 1 9.3768 -2.2657 -1.1830 40 1 7.8229 -2.0846 -0.3335 41 1 9.0267 0.8213 -3.2339 42 1 10.0797 -0.5689 -2.8767 43 1 8.5517 -0.8128 -3.7558 44 1 8.4899 0.2093 0.3981 45 1 10.0436 0.0280 -0.4506 46 1 8.9906 1.4180 -0.8087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592800909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:23 Heat of formation + Delta-G solvation = -29.193558 kcal Electronic energy + Delta-G solvation = -22430.048451 eV Core-core repulsion = 19319.685798 eV Total energy + Delta-G solvation = -3110.362653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10953 -39.18193 -37.26813 -36.42112 -34.99644 -33.63013 -29.99125 -28.46738 -28.10444 -28.03299 -26.85540 -25.83899 -23.52204 -21.98117 -21.03780 -19.75775 -19.43374 -18.64413 -18.03313 -17.35337 -16.49323 -16.09339 -15.64163 -15.46135 -15.35483 -15.28985 -14.67059 -14.37629 -14.22186 -13.99416 -13.84275 -13.35626 -13.11359 -13.08591 -12.95694 -12.87708 -12.63158 -12.54299 -12.51742 -12.33735 -12.22993 -12.22132 -11.83948 -11.64064 -11.57821 -11.28999 -10.99428 -10.81163 -10.64773 -10.53319 -10.16966 -9.46303 -8.21665 -6.34387 1.33549 1.37750 1.41284 1.45743 1.73475 2.31907 2.48084 2.97726 3.07988 3.58592 3.78782 3.86361 4.02047 4.09436 4.13274 4.16512 4.23192 4.32991 4.50623 4.54986 4.73415 4.75436 4.81144 4.81783 4.88380 4.94092 4.99783 5.00742 5.03539 5.09192 5.13246 5.16318 5.20554 5.23170 5.30322 5.40198 5.50898 5.55769 5.58487 5.63157 5.77254 5.80453 6.02488 6.08649 6.70821 6.79398 7.29568 7.49688 8.85794 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.020921 B = 0.004166 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.059829 B = 6720.244118 C = 7234.302179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.168 4.168 3 C 0.137 3.863 4 N -0.596 5.596 5 C 0.262 3.738 6 C -0.528 4.528 7 H 0.052 0.948 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.280 1.280 12 H -0.278 1.278 13 H -0.260 1.260 14 C 0.523 3.477 15 O -0.602 6.602 16 C -0.190 4.190 17 H 0.150 0.850 18 C -0.134 4.134 19 C -0.114 4.114 20 H 0.088 0.912 21 C -0.070 4.070 22 C -0.066 4.066 23 C -0.140 4.140 24 C -0.136 4.136 25 C -0.147 4.147 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.112 0.888 31 H -0.005 1.005 32 H 0.021 0.979 33 H 0.266 0.734 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.059 0.941 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -6.742 -20.073 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.187 4.187 3 C 0.016 3.984 4 N -0.325 5.325 5 C 0.140 3.860 6 C -0.567 4.567 7 H 0.070 0.930 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.205 1.205 12 H -0.203 1.203 13 H -0.184 1.184 14 C 0.313 3.687 15 O -0.484 6.484 16 C -0.211 4.211 17 H 0.168 0.832 18 C -0.171 4.171 19 C -0.133 4.133 20 H 0.106 0.894 21 C -0.108 4.108 22 C -0.066 4.066 23 C -0.197 4.197 24 C -0.193 4.193 25 C -0.205 4.205 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.013 0.987 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.920 -6.579 -19.432 21.991 hybrid contribution -0.535 -0.207 1.593 1.693 sum 7.384 -6.787 -17.839 20.465 Atomic orbital electron populations 1.23886 0.95648 1.02375 0.99570 1.23180 0.96557 0.98353 1.00647 1.20862 0.92347 0.96233 0.89007 1.48162 1.11314 1.60317 1.12719 1.18744 0.93262 0.93673 0.80298 1.21585 1.39405 0.95244 1.00477 0.92972 1.25814 0.96456 0.98138 0.98744 1.70048 1.47752 1.21148 1.18127 0.85554 0.78875 0.78960 0.77972 1.20535 1.20318 1.18423 1.20489 0.81325 0.77115 0.89790 1.90617 1.54959 1.58349 1.44432 1.22356 1.03027 1.00287 0.95422 0.83236 1.23116 1.01129 0.88904 1.03980 1.22470 0.88684 1.01501 1.00655 0.89397 1.21275 0.94182 1.01846 0.93451 1.20508 0.94485 0.95635 0.95934 1.21866 1.01562 0.94891 1.01386 1.21826 1.00102 1.01918 0.95503 1.21971 1.00259 0.99952 0.98281 0.88265 0.87521 0.87816 0.90367 0.87021 0.98719 0.96067 0.92525 0.91002 0.84429 0.89393 0.91262 0.91517 0.92619 0.93884 0.92528 0.92359 0.91583 0.94308 0.92181 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.01 14.32 67.78 0.97 -4.04 16 2 C -0.17 -5.17 9.85 25.65 0.25 -4.92 16 3 C 0.14 4.40 5.72 85.63 0.49 4.89 16 4 N -0.60 -26.18 2.44 -830.50 -2.03 -28.21 16 5 C 0.26 14.55 5.20 85.63 0.45 15.00 16 6 C -0.53 -31.08 9.39 25.60 0.24 -30.84 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.41 5.46 84.65 0.46 0.87 16 9 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 10 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 14 C 0.52 22.80 7.45 87.66 0.65 23.46 16 15 O -0.60 -32.84 15.84 -3.05 -0.05 -32.89 16 16 C -0.19 -5.57 5.01 -11.54 -0.06 -5.63 16 17 H 0.15 3.32 6.44 -2.39 -0.02 3.31 16 18 C -0.13 -3.33 9.88 30.59 0.30 -3.03 16 19 C -0.11 -3.00 3.77 -10.80 -0.04 -3.04 16 20 H 0.09 2.94 5.58 -2.38 -0.01 2.92 16 21 C -0.07 -1.29 4.55 30.59 0.14 -1.15 16 22 C -0.07 -1.14 0.80 -52.18 -0.04 -1.19 16 23 C -0.14 -2.41 8.23 71.98 0.59 -1.82 16 24 C -0.14 -1.82 8.47 71.98 0.61 -1.21 16 25 C -0.15 -3.11 8.23 71.98 0.59 -2.52 16 26 H 0.10 2.69 7.84 -2.91 -0.02 2.67 16 27 H 0.11 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.10 3.17 8.06 -2.91 -0.02 3.14 16 29 H 0.08 2.47 7.54 -2.39 -0.02 2.45 16 30 H 0.11 2.66 5.99 -2.39 -0.01 2.64 16 31 H -0.01 -0.34 7.42 -2.38 -0.02 -0.36 16 32 H 0.02 1.20 7.89 -2.39 -0.02 1.18 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.14 2.33 8.03 -2.39 -0.02 2.31 16 36 H 0.09 1.23 7.88 -2.39 -0.02 1.21 16 37 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 0.90 7.20 -2.39 -0.02 0.88 16 41 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.04 1.01 6.14 -2.39 -0.01 1.00 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -74.73 372.23 6.76 -67.96 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.92 Total: 17.51 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 5.61 Total: -15.16 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -1.74 Total: -85.44 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.05 Total: -32.89 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -74.73 6.76 -67.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592800909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.769 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds