Wall clock time and date at job start Tue Mar 31 2020 00:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.93806 * 2 1 4 4 C 1.56086 * 111.06611 * 124.03850 * 2 1 3 5 5 N 1.49319 * 106.55509 * 141.79144 * 4 2 1 6 6 C 1.34773 * 127.11849 * 187.24135 * 5 4 2 7 7 O 1.21278 * 120.00678 * 179.97438 * 6 5 4 8 8 C 1.50702 * 119.99700 * 359.97217 * 6 5 4 9 9 C 1.53003 * 109.47287 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47202 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47164 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99987 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00264 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00159 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00160 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47303 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47297 * 120.00912 * 15 13 11 18 18 H 1.48503 * 109.47183 * 240.00400 * 15 13 11 19 19 C 1.41775 * 105.77172 * 7.22122 * 5 4 2 20 20 H 1.09000 * 105.75076 * 73.30783 * 19 5 4 21 21 C 1.49035 * 131.53113 * 201.37027 * 19 5 4 22 22 C 1.55880 * 104.21279 * 157.02671 * 21 19 5 23 23 C 1.56023 * 105.89379 * 354.83743 * 22 21 19 24 24 C 1.52560 * 102.47080 * 334.54309 * 23 22 21 25 25 H 1.09001 * 112.91231 * 284.00180 * 24 23 22 26 26 H 1.08993 * 109.46718 * 297.41618 * 1 2 3 27 27 H 1.09002 * 109.46728 * 57.41311 * 1 2 3 28 28 H 1.08998 * 109.47140 * 177.41500 * 1 2 3 29 29 H 1.08998 * 109.46908 * 182.58463 * 3 2 1 30 30 H 1.09001 * 109.47341 * 302.58631 * 3 2 1 31 31 H 1.09000 * 109.46809 * 62.58239 * 3 2 1 32 32 H 1.09003 * 110.03518 * 22.51816 * 4 2 1 33 33 H 1.09000 * 110.08204 * 261.08974 * 4 2 1 34 34 H 1.08998 * 109.47317 * 300.00441 * 8 6 5 35 35 H 1.09001 * 109.46824 * 60.00483 * 8 6 5 36 36 H 1.08998 * 109.47038 * 300.00288 * 9 8 6 37 37 H 1.09003 * 109.46753 * 59.99874 * 9 8 6 38 38 H 1.09008 * 109.46792 * 299.99373 * 10 9 8 39 39 H 1.08991 * 109.47940 * 59.99754 * 10 9 8 40 40 H 0.97000 * 120.00392 * 179.97438 * 14 13 11 41 41 H 1.08997 * 110.48351 * 275.71308 * 21 19 5 42 42 H 1.08999 * 110.48357 * 38.34066 * 21 19 5 43 43 H 1.08999 * 110.16588 * 235.72556 * 22 21 19 44 44 H 1.09007 * 110.22875 * 113.97910 * 22 21 19 45 45 H 1.09002 * 110.80415 * 216.29889 * 23 22 21 46 46 H 1.08997 * 110.97901 * 92.86328 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0768 1.4290 0.0000 4 6 2.0911 -0.8153 1.2070 5 7 3.2935 -1.5449 0.7055 6 6 4.0148 -2.4734 1.3641 7 8 4.9744 -2.9875 0.8296 8 6 3.6291 -2.8729 2.7651 9 6 4.6035 -3.9344 3.2794 10 6 4.2115 -4.3404 4.7015 11 6 5.1709 -5.3865 5.2078 12 1 5.9796 -5.7273 4.5784 13 6 5.0169 -5.9076 6.4749 14 7 4.0323 -5.4923 7.2416 15 14 6.2065 -7.2037 7.1028 16 1 7.2169 -7.4974 6.0549 17 1 6.8888 -6.7004 8.3219 18 1 5.4591 -8.4444 7.4305 19 6 3.5192 -1.0591 -0.6072 20 1 3.9203 -0.0529 -0.4855 21 6 4.2595 -1.6410 -1.7625 22 6 3.6395 -0.9377 -3.0078 23 6 2.4610 -0.0705 -2.4660 24 6 2.0793 -0.7991 -1.1812 25 1 1.5151 -1.7137 -1.3636 26 1 -0.3632 0.4732 0.9122 27 1 -0.3633 0.5535 -0.8659 28 1 -0.3633 -1.0266 -0.0463 29 1 3.1655 1.4014 -0.0463 30 1 1.6897 1.9662 -0.8659 31 1 1.7647 1.9374 0.9122 32 1 1.3426 -1.5257 1.5580 33 1 2.3736 -0.1408 2.0153 34 1 3.6676 -1.9992 3.4157 35 1 2.6175 -3.2790 2.7616 36 1 4.5654 -4.8082 2.6289 37 1 5.6149 -3.5279 3.2829 38 1 4.2494 -3.4667 5.3522 39 1 3.2002 -4.7469 4.6977 40 1 3.9237 -5.8592 8.1330 41 1 5.3231 -1.4149 -1.6869 42 1 4.1004 -2.7181 -1.8140 43 1 3.2662 -1.6811 -3.7121 44 1 4.3823 -0.3027 -3.4908 45 1 1.6288 -0.0651 -3.1700 46 1 2.7910 0.9459 -2.2513 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594365515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:58 Heat of formation + Delta-G solvation = -67.862441 kcal Electronic energy + Delta-G solvation = -22483.479089 eV Core-core repulsion = 19371.439627 eV Total energy + Delta-G solvation = -3112.039462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.31801 -39.84666 -36.34701 -36.13742 -34.83230 -34.01644 -30.23432 -29.04799 -28.44967 -28.09708 -27.26793 -25.65610 -22.95840 -22.02776 -21.52203 -20.00348 -19.38646 -18.48512 -17.75420 -17.53922 -16.90038 -16.50204 -16.10558 -15.67488 -15.32732 -14.81635 -14.66643 -14.51613 -14.37918 -13.95621 -13.82803 -13.56919 -13.35471 -13.12938 -12.84227 -12.69606 -12.66637 -12.54024 -12.40637 -12.38299 -12.26211 -12.12903 -11.60962 -11.51240 -11.49578 -11.34811 -11.32285 -11.23462 -11.20444 -10.65811 -10.56401 -9.49857 -8.21879 -6.32055 1.38365 1.38407 1.52629 1.57040 1.92511 2.40450 3.07037 3.10838 3.41595 3.67779 3.74220 3.92755 4.05638 4.06294 4.14370 4.19289 4.35206 4.40485 4.46123 4.50130 4.57765 4.67987 4.71649 4.75025 4.82727 4.89423 4.92106 5.00762 5.03605 5.04739 5.09703 5.14332 5.14964 5.17953 5.20629 5.29490 5.40957 5.42741 5.50823 5.55487 5.60624 5.71582 5.83626 6.25244 6.51349 6.82781 7.17738 7.36613 8.89943 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.003305 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.996774 B = 8470.905191 C = 9146.599424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C -0.139 4.139 4 C 0.101 3.899 5 N -0.603 5.603 6 C 0.523 3.477 7 O -0.581 6.581 8 C -0.123 4.123 9 C -0.081 4.081 10 C 0.028 3.972 11 C -0.548 4.548 12 H 0.050 0.950 13 C 0.003 3.997 14 N -0.928 5.928 15 Si 0.963 3.037 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.093 3.907 20 H 0.056 0.944 21 C -0.108 4.108 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.100 4.100 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.052 0.948 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 17.184 -19.902 28.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 C -0.196 4.196 4 C -0.019 4.019 5 N -0.335 5.335 6 C 0.314 3.686 7 O -0.461 6.461 8 C -0.162 4.162 9 C -0.119 4.119 10 C -0.009 4.009 11 C -0.586 4.586 12 H 0.068 0.932 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.013 4.013 20 H 0.074 0.926 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.142 4.142 24 C -0.120 4.120 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.423 16.852 -19.952 27.764 hybrid contribution 0.899 -1.110 0.828 1.651 sum -8.524 15.742 -19.124 26.196 Atomic orbital electron populations 1.21742 0.91506 1.02397 1.03299 1.21346 0.96990 0.95157 0.92337 1.21913 1.00438 0.93802 1.03450 1.23361 0.85333 0.95346 0.97894 1.47590 1.30896 1.39988 1.15009 1.20837 0.81688 0.77560 0.88494 1.90652 1.29866 1.55260 1.70338 1.21622 1.01777 1.01011 0.91828 1.21158 0.97452 0.96575 0.96698 1.19004 0.95498 0.95058 0.91382 1.21696 1.13585 1.23134 1.00163 0.93179 1.25912 0.97423 0.99126 0.96999 1.70073 1.32370 1.44670 1.09752 0.85428 0.78848 0.78706 0.78257 1.19330 1.19931 1.19941 1.20911 0.98841 0.97311 0.84200 0.92631 1.21318 0.99005 0.99773 0.94550 1.22812 0.97807 0.98887 0.95416 1.22097 0.98025 0.98876 0.95197 1.23041 0.94291 0.99548 0.95076 0.89957 0.91369 0.90625 0.92672 0.93247 0.90167 0.91316 0.89858 0.89797 0.87861 0.87879 0.94238 0.94202 0.98029 0.98038 0.92599 0.92867 0.93825 0.90668 0.90189 0.89286 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.61 71.98 0.62 -0.69 16 2 C -0.06 -0.78 0.93 -51.17 -0.05 -0.83 16 3 C -0.14 -1.54 7.28 71.98 0.52 -1.02 16 4 C 0.10 1.93 5.90 86.90 0.51 2.44 16 5 N -0.60 -16.56 3.22 -793.85 -2.56 -19.12 16 6 C 0.52 18.96 7.87 87.66 0.69 19.65 16 7 O -0.58 -25.91 15.79 -3.02 -0.05 -25.96 16 8 C -0.12 -4.41 5.01 29.85 0.15 -4.26 16 9 C -0.08 -3.77 4.44 30.59 0.14 -3.63 16 10 C 0.03 1.52 4.97 29.85 0.15 1.66 16 11 C -0.55 -33.04 9.11 25.60 0.23 -32.81 16 12 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 15 Si 0.96 45.93 29.54 68.60 2.03 47.95 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 C 0.09 2.20 2.83 46.06 0.13 2.33 16 20 H 0.06 1.27 5.31 -2.39 -0.01 1.25 16 21 C -0.11 -2.62 6.01 30.33 0.18 -2.44 16 22 C -0.11 -1.68 6.94 32.64 0.23 -1.45 16 23 C -0.10 -1.23 6.07 31.50 0.19 -1.04 16 24 C -0.10 -1.61 2.89 -9.53 -0.03 -1.64 16 25 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.69 6.00 -2.39 -0.01 0.67 16 30 H 0.08 0.63 7.40 -2.39 -0.02 0.61 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.50 7.88 -2.39 -0.02 1.48 16 33 H 0.08 1.46 7.91 -2.39 -0.02 1.44 16 34 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.04 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 38 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.09 0.86 6.29 -2.39 -0.02 0.84 16 Total: -1.00 -73.76 354.49 4.76 -69.00 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.92 Total: 7.92 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.13 Total: -23.07 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -2.27 Total: -75.85 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -73.76 4.76 -69.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594365515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.138 kcal (2) G-P(sol) polarization free energy of solvation -73.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds