Wall clock time and date at job start Tue Mar 31 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 N 1.46500 * 109.46825 * 119.99890 * 2 1 3 5 5 C 1.46502 * 119.99986 * 304.06694 * 4 2 1 6 6 C 1.50703 * 109.47057 * 269.99942 * 5 4 2 7 7 H 1.08004 * 119.99783 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00088 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 119.99891 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47509 * 89.99833 * 10 8 6 12 12 H 1.48500 * 109.47187 * 209.99945 * 10 8 6 13 13 H 1.48508 * 109.47281 * 329.99791 * 10 8 6 14 14 C 1.34781 * 119.99888 * 124.06997 * 4 2 1 15 15 O 1.21281 * 119.99783 * 184.16055 * 14 4 2 16 16 C 1.50693 * 119.99941 * 4.15742 * 14 4 2 17 17 C 1.52946 * 109.41537 * 83.71008 * 16 14 4 18 18 C 1.53178 * 109.45103 * 183.09376 * 17 16 14 19 19 C 1.53153 * 108.88141 * 303.42780 * 18 17 16 20 20 C 1.52806 * 117.74915 * 199.62782 * 19 18 17 21 21 C 1.52845 * 117.67698 * 268.50744 * 19 18 17 22 22 C 1.53147 * 115.00667 * 53.93789 * 19 18 17 23 23 C 1.52947 * 109.41243 * 204.06776 * 16 14 4 24 24 H 1.08995 * 109.47600 * 300.00190 * 1 2 3 25 25 H 1.09003 * 109.46984 * 60.00343 * 1 2 3 26 26 H 1.09001 * 109.47646 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46979 * 239.99782 * 2 1 3 28 28 H 1.08998 * 109.47074 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46881 * 299.99721 * 3 2 1 30 30 H 1.08995 * 109.47008 * 59.99447 * 3 2 1 31 31 H 1.08999 * 109.46955 * 30.00302 * 5 4 2 32 32 H 1.09001 * 109.47237 * 150.00443 * 5 4 2 33 33 H 0.97002 * 120.00241 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.35683 * 323.88799 * 16 14 4 35 35 H 1.09007 * 109.47431 * 63.09685 * 17 16 14 36 36 H 1.09003 * 109.47477 * 303.08882 * 17 16 14 37 37 H 1.08998 * 109.56488 * 183.60818 * 18 17 16 38 38 H 1.08994 * 109.57204 * 63.24756 * 18 17 16 39 39 H 1.09001 * 117.50166 * 0.14992 * 20 19 18 40 40 H 1.09001 * 117.50182 * 215.10837 * 20 19 18 41 41 H 1.08991 * 117.50517 * 144.77989 * 21 19 18 42 42 H 1.08998 * 117.52722 * 359.71361 * 21 19 18 43 43 H 1.09000 * 109.56463 * 65.89290 * 22 19 18 44 44 H 1.09003 * 109.57025 * 186.23980 * 22 19 18 45 45 H 1.09001 * 109.47248 * 296.90703 * 23 16 14 46 46 H 1.08996 * 109.47279 * 56.91781 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5923 -0.2441 2.5249 6 6 2.5560 0.7944 3.0387 7 1 3.4010 1.0923 2.4356 8 6 2.3590 1.3641 4.2787 9 7 3.1997 2.2707 4.7269 10 14 0.8980 0.8483 5.3221 11 1 1.2854 -0.2966 6.1849 12 1 0.4710 1.9875 6.1736 13 1 -0.2240 0.4438 4.4373 14 6 2.8594 -1.7367 1.0743 15 8 3.2040 -2.3556 2.0587 16 6 3.3715 -2.1372 -0.2852 17 6 4.5808 -1.2738 -0.6476 18 6 5.0546 -1.6270 -2.0608 19 6 5.3638 -3.1258 -2.1198 20 6 6.2650 -3.6224 -3.2494 21 6 6.7947 -3.5681 -1.8147 22 6 4.2237 -4.0405 -1.6626 23 6 3.7757 -3.6121 -0.2619 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.5935 0.1874 2.4603 32 1 1.5773 -1.0946 3.2065 33 1 3.0609 2.6719 5.5991 34 1 2.5854 -1.9887 -1.0256 35 1 5.3863 -1.4599 0.0629 36 1 4.2999 -0.2212 -0.6109 37 1 5.9545 -1.0590 -2.2967 38 1 4.2707 -1.3874 -2.7792 39 1 6.6434 -2.8818 -3.9540 40 1 6.0502 -4.6049 -3.6697 41 1 6.9282 -4.5147 -1.2912 42 1 7.5217 -2.7919 -1.5756 43 1 3.3869 -3.9550 -2.3557 44 1 4.5727 -5.0728 -1.6345 45 1 4.5966 -3.7529 0.4412 46 1 2.9239 -4.2174 0.0481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597041027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:01 Heat of formation + Delta-G solvation = -31.906874 kcal Electronic energy + Delta-G solvation = -23351.645738 eV Core-core repulsion = 20241.165426 eV Total energy + Delta-G solvation = -3110.480311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.09007 -38.56042 -36.04694 -34.53333 -32.66941 -30.99403 -30.84973 -28.82347 -27.09368 -26.74719 -23.09371 -22.76853 -22.38968 -21.59802 -20.78015 -18.76931 -17.79439 -16.88899 -16.72585 -15.56037 -15.39285 -14.87689 -14.39830 -14.09766 -13.74082 -13.58552 -13.41901 -13.19055 -12.89434 -12.50026 -12.36651 -12.20808 -12.09301 -11.80078 -11.69206 -11.59221 -11.52426 -11.37773 -11.01422 -10.95644 -10.85191 -10.67761 -10.43707 -10.18766 -10.09287 -10.02029 -9.96779 -9.64890 -9.42102 -8.76445 -8.54451 -7.63509 -6.05064 -4.02010 3.30807 3.36781 3.39379 3.41152 3.69381 3.89318 4.42759 4.54910 4.67110 4.80819 4.88470 5.07977 5.14999 5.16382 5.26703 5.29386 5.38426 5.50760 5.53858 5.55923 5.56868 5.66248 5.80844 5.82993 5.85161 5.94288 5.99034 6.01618 6.04549 6.08046 6.13153 6.25329 6.29350 6.32172 6.34449 6.46684 6.56082 6.57583 6.83819 7.01822 7.03913 7.45069 7.66734 8.36289 8.52562 8.98550 9.08215 9.56346 11.08155 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.004866 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.175619 B = 5752.343412 C = 5974.885222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.158 4.158 4 N -0.588 5.588 5 C 0.213 3.787 6 C -0.520 4.520 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.512 3.488 15 O -0.544 6.544 16 C -0.105 4.105 17 C -0.105 4.105 18 C -0.077 4.077 19 C -0.120 4.120 20 C -0.180 4.180 21 C -0.174 4.174 22 C -0.079 4.079 23 C -0.097 4.097 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -8.437 -17.267 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.319 5.319 5 C 0.092 3.908 6 C -0.558 4.558 7 H 0.095 0.905 8 C -0.131 4.131 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.299 3.701 15 O -0.421 6.421 16 C -0.126 4.126 17 C -0.143 4.143 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.216 4.216 21 C -0.211 4.211 22 C -0.116 4.116 23 C -0.135 4.135 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.114 -8.629 -16.561 18.674 hybrid contribution -0.656 -0.027 0.697 0.958 sum -0.542 -8.657 -15.864 18.080 Atomic orbital electron populations 1.22170 0.95734 1.01750 1.02457 1.21085 0.93926 0.94234 0.88064 1.22181 1.01532 0.95568 1.02349 1.48012 1.45859 1.30287 1.07780 1.19624 0.95671 0.95707 0.79761 1.21349 1.11258 1.20563 1.02668 0.90549 1.24843 0.96183 0.94767 0.97258 1.69892 1.36664 1.27844 1.19376 0.86907 0.83554 0.78475 0.81090 1.20027 1.21201 1.19141 1.20376 0.78922 0.80283 0.90505 1.90643 1.57836 1.53678 1.39990 1.21313 0.98680 0.96906 0.95711 1.21455 0.96976 0.99343 0.96536 1.21135 1.01025 0.92313 0.96964 1.21516 0.91931 0.95976 1.02531 1.22978 1.04620 1.02377 0.91673 1.23004 0.96759 1.02986 0.98320 1.21154 0.96436 0.97394 0.96643 1.21328 1.01862 0.93888 0.96398 0.91509 0.92063 0.92902 0.90146 0.92561 0.93298 0.90006 0.95184 0.94813 0.92691 0.89646 0.91124 0.90949 0.91680 0.91496 0.89073 0.89137 0.88984 0.88917 0.91668 0.91852 0.90755 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.09 37.16 0.34 -1.96 16 2 C 0.13 2.09 2.88 -67.93 -0.20 1.89 16 3 C -0.16 -2.61 8.58 37.16 0.32 -2.29 16 4 N -0.59 -12.02 2.39 -167.47 -0.40 -12.42 16 5 C 0.21 5.19 3.80 -5.19 -0.02 5.17 16 6 C -0.52 -14.64 8.40 -34.44 -0.29 -14.92 16 7 H 0.08 2.34 7.84 -52.48 -0.41 1.93 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 10 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.51 10.49 6.78 -10.99 -0.07 10.42 16 15 O -0.54 -13.54 15.70 5.56 0.09 -13.45 16 16 C -0.10 -1.57 1.61 -91.83 -0.15 -1.72 16 17 C -0.11 -1.49 5.15 -26.67 -0.14 -1.63 16 18 C -0.08 -0.85 5.67 -26.56 -0.15 -1.00 16 19 C -0.12 -1.27 1.97 -154.53 -0.31 -1.58 16 20 C -0.18 -1.63 9.99 -26.82 -0.27 -1.90 16 21 C -0.17 -1.79 9.93 -26.80 -0.27 -2.06 16 22 C -0.08 -0.85 5.67 -26.57 -0.15 -1.00 16 23 C -0.10 -1.35 4.67 -26.67 -0.12 -1.47 16 24 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.07 5.25 -51.93 -0.27 0.80 16 28 H 0.06 0.98 7.10 -51.93 -0.37 0.61 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.62 6.92 -51.93 -0.36 1.26 16 31 H 0.03 0.70 5.28 -51.93 -0.27 0.43 16 32 H 0.03 0.90 6.79 -51.93 -0.35 0.55 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.09 1.11 6.11 -51.93 -0.32 0.79 16 35 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 36 H 0.07 1.07 6.86 -51.93 -0.36 0.71 16 37 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 45 H 0.07 1.18 7.97 -51.93 -0.41 0.76 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 350.66 15.07 5.28 5.28 Total: -1.00 -32.41 350.66 -8.62 -41.03 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.12 Total: 1.42 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.57 Total: -12.08 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.37 Total: -39.24 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.41 -8.62 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597041027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.126 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds