Wall clock time and date at job start Tue Mar 31 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 N 1.46500 * 109.46825 * 119.99890 * 2 1 3 5 5 C 1.46502 * 119.99986 * 304.06694 * 4 2 1 6 6 C 1.50703 * 109.47057 * 269.99942 * 5 4 2 7 7 H 1.08004 * 119.99783 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00088 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 119.99891 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47509 * 89.99833 * 10 8 6 12 12 H 1.48500 * 109.47187 * 209.99945 * 10 8 6 13 13 H 1.48508 * 109.47281 * 329.99791 * 10 8 6 14 14 C 1.34781 * 119.99888 * 124.06997 * 4 2 1 15 15 O 1.21281 * 119.99783 * 184.16055 * 14 4 2 16 16 C 1.50693 * 119.99941 * 4.15742 * 14 4 2 17 17 C 1.52946 * 109.41537 * 83.71008 * 16 14 4 18 18 C 1.53178 * 109.45103 * 183.09376 * 17 16 14 19 19 C 1.53153 * 108.88141 * 303.42780 * 18 17 16 20 20 C 1.52806 * 117.74915 * 199.62782 * 19 18 17 21 21 C 1.52845 * 117.67698 * 268.50744 * 19 18 17 22 22 C 1.53147 * 115.00667 * 53.93789 * 19 18 17 23 23 C 1.52947 * 109.41243 * 204.06776 * 16 14 4 24 24 H 1.08995 * 109.47600 * 300.00190 * 1 2 3 25 25 H 1.09003 * 109.46984 * 60.00343 * 1 2 3 26 26 H 1.09001 * 109.47646 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46979 * 239.99782 * 2 1 3 28 28 H 1.08998 * 109.47074 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46881 * 299.99721 * 3 2 1 30 30 H 1.08995 * 109.47008 * 59.99447 * 3 2 1 31 31 H 1.08999 * 109.46955 * 30.00302 * 5 4 2 32 32 H 1.09001 * 109.47237 * 150.00443 * 5 4 2 33 33 H 0.97002 * 120.00241 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.35683 * 323.88799 * 16 14 4 35 35 H 1.09007 * 109.47431 * 63.09685 * 17 16 14 36 36 H 1.09003 * 109.47477 * 303.08882 * 17 16 14 37 37 H 1.08998 * 109.56488 * 183.60818 * 18 17 16 38 38 H 1.08994 * 109.57204 * 63.24756 * 18 17 16 39 39 H 1.09001 * 117.50166 * 0.14992 * 20 19 18 40 40 H 1.09001 * 117.50182 * 215.10837 * 20 19 18 41 41 H 1.08991 * 117.50517 * 144.77989 * 21 19 18 42 42 H 1.08998 * 117.52722 * 359.71361 * 21 19 18 43 43 H 1.09000 * 109.56463 * 65.89290 * 22 19 18 44 44 H 1.09003 * 109.57025 * 186.23980 * 22 19 18 45 45 H 1.09001 * 109.47248 * 296.90703 * 23 16 14 46 46 H 1.08996 * 109.47279 * 56.91781 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5923 -0.2441 2.5249 6 6 2.5560 0.7944 3.0387 7 1 3.4010 1.0923 2.4356 8 6 2.3590 1.3641 4.2787 9 7 3.1997 2.2707 4.7269 10 14 0.8980 0.8483 5.3221 11 1 1.2854 -0.2966 6.1849 12 1 0.4710 1.9875 6.1736 13 1 -0.2240 0.4438 4.4373 14 6 2.8594 -1.7367 1.0743 15 8 3.2040 -2.3556 2.0587 16 6 3.3715 -2.1372 -0.2852 17 6 4.5808 -1.2738 -0.6476 18 6 5.0546 -1.6270 -2.0608 19 6 5.3638 -3.1258 -2.1198 20 6 6.2650 -3.6224 -3.2494 21 6 6.7947 -3.5681 -1.8147 22 6 4.2237 -4.0405 -1.6626 23 6 3.7757 -3.6121 -0.2619 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.5935 0.1874 2.4603 32 1 1.5773 -1.0946 3.2065 33 1 3.0609 2.6719 5.5991 34 1 2.5854 -1.9887 -1.0256 35 1 5.3863 -1.4599 0.0629 36 1 4.2999 -0.2212 -0.6109 37 1 5.9545 -1.0590 -2.2967 38 1 4.2707 -1.3874 -2.7792 39 1 6.6434 -2.8818 -3.9540 40 1 6.0502 -4.6049 -3.6697 41 1 6.9282 -4.5147 -1.2912 42 1 7.5217 -2.7919 -1.5756 43 1 3.3869 -3.9550 -2.3557 44 1 4.5727 -5.0728 -1.6345 45 1 4.5966 -3.7529 0.4412 46 1 2.9239 -4.2174 0.0481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597041027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:01 Heat of formation + Delta-G solvation = -50.738084 kcal Electronic energy + Delta-G solvation = -23352.462320 eV Core-core repulsion = 20241.165426 eV Total energy + Delta-G solvation = -3111.296894 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44592 -39.69959 -37.62596 -35.71128 -34.77745 -32.57051 -31.90481 -30.46283 -28.51069 -27.98055 -24.79778 -23.78120 -23.37931 -22.93740 -22.08696 -19.83087 -19.20115 -19.05422 -18.23426 -17.03767 -16.45238 -16.19104 -15.85022 -15.78594 -15.06908 -14.93724 -14.63056 -14.47029 -14.32328 -14.02781 -13.70909 -13.53648 -13.29513 -13.22151 -13.13787 -12.83664 -12.70759 -12.60279 -12.36845 -12.32175 -12.25346 -12.00791 -11.95964 -11.90477 -11.61575 -11.36228 -11.07625 -10.90863 -10.80225 -10.55428 -10.27377 -9.38233 -8.31548 -6.33454 1.29636 1.33766 1.41471 1.80288 2.30368 2.33109 2.92560 3.02493 3.59360 3.66390 3.79057 3.90636 4.00297 4.12426 4.14735 4.20518 4.29244 4.32831 4.39641 4.52410 4.55990 4.72337 4.80793 4.86258 4.87223 4.89822 4.91308 4.95255 5.01153 5.03844 5.06489 5.08766 5.12440 5.13669 5.24389 5.29517 5.34698 5.40271 5.47732 5.48529 5.50322 5.62857 5.73043 6.28750 6.66918 6.77597 7.25155 7.46801 8.85067 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.004866 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.175619 B = 5752.343412 C = 5974.885222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 C -0.152 4.152 4 N -0.593 5.593 5 C 0.223 3.777 6 C -0.517 4.517 7 H 0.034 0.966 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.939 3.061 11 H -0.280 1.280 12 H -0.275 1.275 13 H -0.241 1.241 14 C 0.499 3.501 15 O -0.600 6.600 16 C -0.091 4.091 17 C -0.102 4.102 18 C -0.068 4.068 19 C -0.133 4.133 20 C -0.154 4.154 21 C -0.192 4.192 22 C -0.070 4.070 23 C -0.094 4.094 24 H 0.043 0.957 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.035 0.965 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.120 0.880 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -9.396 -20.667 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 C -0.210 4.210 4 N -0.323 5.323 5 C 0.100 3.900 6 C -0.556 4.556 7 H 0.053 0.947 8 C -0.186 4.186 9 N -0.586 5.586 10 Si 0.762 3.238 11 H -0.206 1.206 12 H -0.200 1.200 13 H -0.164 1.164 14 C 0.289 3.711 15 O -0.482 6.482 16 C -0.112 4.112 17 C -0.140 4.140 18 C -0.105 4.105 19 C -0.133 4.133 20 C -0.191 4.191 21 C -0.229 4.229 22 C -0.107 4.107 23 C -0.132 4.132 24 H 0.063 0.937 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.055 0.945 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.854 -9.575 -20.017 22.266 hybrid contribution 0.058 0.312 1.741 1.770 sum -1.796 -9.263 -18.276 20.568 Atomic orbital electron populations 1.22152 0.93652 1.02616 1.03214 1.21494 0.95589 0.93528 0.87214 1.22108 1.00254 0.96253 1.02410 1.48161 1.45829 1.30530 1.07791 1.19254 0.95443 0.93508 0.81753 1.21509 1.10629 1.21103 1.02369 0.94732 1.25751 0.99400 0.94756 0.98731 1.70040 1.39010 1.29481 1.20112 0.85848 0.80524 0.78007 0.79403 1.20601 1.20042 1.16397 1.21491 0.77904 0.79516 0.92220 1.90605 1.59555 1.55613 1.42408 1.21336 0.99608 0.97645 0.92648 1.21414 0.95603 0.98654 0.98294 1.21097 1.02019 0.92805 0.94619 1.21548 0.91912 0.95640 1.04177 1.23034 1.02122 1.03197 0.90748 1.23056 0.96860 1.02831 1.00169 1.21112 0.97244 0.97860 0.94460 1.21296 1.00655 0.93085 0.98179 0.93740 0.88298 0.91976 0.86577 0.94546 0.89060 0.93960 0.93413 0.97192 0.92500 0.86205 0.94438 0.91834 0.91045 0.89021 0.87904 0.87726 0.89275 0.89579 0.89381 0.90833 0.93885 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 9.09 71.98 0.65 -3.28 16 2 C 0.12 3.68 2.88 44.99 0.13 3.81 16 3 C -0.15 -4.90 8.58 71.98 0.62 -4.28 16 4 N -0.59 -24.36 2.39 -802.13 -1.92 -26.27 16 5 C 0.22 11.09 3.80 85.63 0.33 11.42 16 6 C -0.52 -30.49 8.40 25.60 0.22 -30.27 16 7 H 0.03 2.26 7.84 -2.91 -0.02 2.24 16 8 C 0.01 0.67 5.47 84.66 0.46 1.13 16 9 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 10 Si 0.94 45.55 27.47 68.60 1.88 47.43 16 11 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 14 C 0.50 20.88 6.78 87.65 0.59 21.47 16 15 O -0.60 -31.44 15.70 -3.03 -0.05 -31.49 16 16 C -0.09 -2.65 1.61 -11.58 -0.02 -2.67 16 17 C -0.10 -2.84 5.15 30.64 0.16 -2.68 16 18 C -0.07 -1.32 5.67 30.70 0.17 -1.15 16 19 C -0.13 -2.47 1.97 -52.20 -0.10 -2.57 16 20 C -0.15 -2.26 9.99 30.54 0.31 -1.95 16 21 C -0.19 -3.71 9.93 30.55 0.30 -3.41 16 22 C -0.07 -1.30 5.67 30.70 0.17 -1.13 16 23 C -0.09 -2.56 4.67 30.63 0.14 -2.41 16 24 H 0.04 1.31 6.54 -2.39 -0.02 1.29 16 25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.12 2.62 5.25 -2.39 -0.01 2.61 16 28 H 0.04 1.28 7.10 -2.39 -0.02 1.27 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.69 6.92 -2.39 -0.02 1.67 16 31 H 0.05 2.21 5.28 -2.39 -0.01 2.20 16 32 H 0.01 0.55 6.79 -2.39 -0.02 0.53 16 33 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 34 H 0.12 2.64 6.11 -2.39 -0.01 2.62 16 35 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.06 1.87 6.86 -2.39 -0.02 1.85 16 37 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.25 8.09 -2.39 -0.02 1.24 16 45 H 0.04 1.42 7.97 -2.39 -0.02 1.40 16 46 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -76.64 350.66 5.23 -71.40 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.88 Total: 17.01 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 4.14 Total: -17.98 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -1.62 Total: -86.38 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.05 Total: -31.49 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -76.64 5.23 -71.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597041027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.666 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds