Wall clock time and date at job start Tue Mar 31 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46702 * 2 1 4 4 H 1.09006 * 109.47156 * 304.99739 * 3 2 1 5 5 C 1.50703 * 109.47149 * 184.99867 * 3 2 1 6 6 H 1.07998 * 120.00039 * 240.00133 * 5 3 2 7 7 C 1.37876 * 119.99871 * 59.99726 * 5 3 2 8 8 N 1.31515 * 120.00209 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99832 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47223 * 90.00218 * 9 7 5 11 11 H 1.48503 * 109.46879 * 210.00034 * 9 7 5 12 12 H 1.48494 * 109.47264 * 329.99891 * 9 7 5 13 13 N 1.46499 * 109.47365 * 64.99836 * 3 2 1 14 14 C 1.34779 * 119.99646 * 274.99797 * 13 3 2 15 15 O 1.21277 * 120.00320 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99667 * 179.97438 * 14 13 3 17 17 C 1.50225 * 117.30508 * 110.39215 * 16 14 13 18 18 H 1.09003 * 113.56043 * 214.76955 * 17 16 14 19 19 C 1.48421 * 129.64041 * 6.13794 * 17 16 14 20 20 C 1.54163 * 112.36311 * 134.54213 * 19 17 16 21 21 C 1.54382 * 109.16328 * 296.39590 * 20 19 17 22 22 C 1.51229 * 111.06468 * 101.00876 * 21 20 19 23 23 C 1.49153 * 120.89529 * 324.70587 * 22 21 20 24 24 C 1.54807 * 109.51868 * 277.97904 * 23 22 21 25 25 C 1.50909 * 117.30434 * 180.77816 * 16 14 13 26 26 H 1.09000 * 117.54737 * 359.34450 * 25 16 14 27 27 H 1.09001 * 109.46608 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47445 * 300.00284 * 1 2 3 29 29 H 1.09005 * 109.47020 * 60.00452 * 1 2 3 30 30 H 1.09000 * 109.47176 * 240.00146 * 2 1 3 31 31 H 1.08995 * 109.47006 * 119.99586 * 2 1 3 32 32 H 0.97002 * 120.00327 * 180.02562 * 8 7 5 33 33 H 0.96991 * 119.99968 * 95.00062 * 13 3 2 34 34 H 1.09002 * 115.43372 * 325.58618 * 16 14 13 35 35 H 1.09003 * 108.69708 * 13.97510 * 19 17 16 36 36 H 1.09003 * 109.12375 * 255.40021 * 19 17 16 37 37 H 1.09002 * 109.52338 * 176.49245 * 20 19 17 38 38 H 1.09001 * 109.57723 * 56.33614 * 20 19 17 39 39 H 1.08993 * 109.16076 * 340.59779 * 21 20 19 40 40 H 1.09007 * 109.15817 * 221.41535 * 21 20 19 41 41 H 1.08999 * 107.12753 * 201.77979 * 22 21 20 42 42 H 1.09003 * 107.13442 * 87.63888 * 22 21 20 43 43 H 1.09004 * 109.46232 * 157.96905 * 23 22 21 44 44 H 1.08999 * 109.46385 * 37.99889 * 23 22 21 45 45 H 1.09005 * 110.85810 * 298.16211 * 24 23 22 46 46 H 1.09000 * 110.89810 * 174.70567 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4445 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8786 -1.2279 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8803 -1.3810 10 1 6.5539 -0.3517 -0.7596 11 1 6.3835 0.9217 -2.8164 12 1 6.5574 2.0723 -0.6888 13 7 1.6523 2.0976 1.2518 14 6 0.4349 2.6644 1.3668 15 8 -0.3397 2.6319 0.4342 16 6 0.0360 3.3377 2.6547 17 6 -0.0963 4.8341 2.6378 18 1 0.2072 5.3088 3.5709 19 6 -0.0105 5.7794 1.4968 20 6 -1.1397 6.8287 1.5183 21 6 -2.4984 6.1144 1.3533 22 6 -3.2005 5.9677 2.6847 23 6 -2.4267 5.7190 3.9353 24 6 -2.0960 4.2109 4.0478 25 6 -1.3475 3.9366 2.7230 26 1 -1.9751 3.8583 1.8353 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.8294 -0.0610 -2.9499 33 1 2.2717 2.1233 1.9977 34 1 0.4285 2.8806 3.5630 35 1 -0.0734 5.2126 0.5679 36 1 0.9498 6.2941 1.5309 37 1 -0.9973 7.5339 0.6995 38 1 -1.1226 7.3643 2.4674 39 1 -2.3332 5.1258 0.9252 40 1 -3.1281 6.6947 0.6788 41 1 -3.9158 5.1516 2.5822 42 1 -3.7827 6.8756 2.8425 43 1 -3.0201 6.0259 4.7966 44 1 -1.5004 6.2931 3.9095 45 1 -3.0081 3.6171 4.1083 46 1 -1.4514 4.0170 4.9051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:22 Heat of formation + Delta-G solvation = -49.340577 kcal Electronic energy + Delta-G solvation = -23123.133917 eV Core-core repulsion = 20011.897624 eV Total energy + Delta-G solvation = -3111.236294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.65489 -39.72801 -36.94300 -35.62215 -34.25771 -34.04214 -32.74690 -29.60484 -28.82714 -26.92455 -25.51534 -24.36280 -22.83986 -21.60509 -21.28742 -20.74072 -20.17530 -18.59275 -17.31319 -17.20471 -16.82125 -16.30266 -15.91464 -15.57085 -15.31903 -15.05004 -14.61084 -14.52305 -14.32022 -13.97587 -13.72486 -13.44502 -13.18248 -13.11095 -12.89453 -12.82262 -12.66957 -12.26184 -12.18470 -12.08601 -12.07514 -11.83273 -11.62613 -11.58903 -11.28199 -11.14009 -11.05799 -10.67412 -10.59380 -10.48609 -10.13821 -9.58149 -8.16687 -6.34288 1.43495 1.44206 1.54723 1.78030 2.34560 2.59541 2.93195 3.12771 3.60968 3.82128 3.92375 4.03910 4.05489 4.23326 4.24188 4.31002 4.45406 4.47234 4.55905 4.57527 4.63460 4.71373 4.75823 4.92470 4.97766 5.02008 5.05336 5.06181 5.17240 5.18029 5.23606 5.25064 5.26919 5.41917 5.43078 5.48307 5.53947 5.55860 5.63765 5.66199 5.69719 5.79419 5.94684 6.16880 6.74388 7.05576 7.33571 7.65197 8.88670 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026616 B = 0.004254 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.745065 B = 6579.865533 C = 6929.688853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.705 5.705 14 C 0.524 3.476 15 O -0.588 6.588 16 C -0.157 4.157 17 C -0.131 4.131 18 H 0.123 0.877 19 C -0.092 4.092 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.080 4.080 25 C -0.131 4.131 26 H 0.097 0.903 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.402 0.598 34 H 0.144 0.856 35 H 0.023 0.977 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 10.902 14.861 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.011 0.989 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.353 5.353 14 C 0.311 3.689 15 O -0.470 6.470 16 C -0.178 4.178 17 C -0.150 4.150 18 H 0.141 0.859 19 C -0.129 4.129 20 C -0.138 4.138 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.117 4.117 25 C -0.149 4.149 26 H 0.115 0.885 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.162 0.838 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.389 10.810 14.006 20.030 hybrid contribution 1.254 -0.484 -0.775 1.552 sum -8.136 10.326 13.231 18.651 Atomic orbital electron populations 1.21662 0.97024 0.99040 1.00172 1.21780 0.93708 0.99243 1.01208 1.18317 0.93551 0.89054 0.81420 0.98873 1.21586 0.91481 1.38904 1.06689 0.91188 1.25776 1.03357 0.94360 0.94963 1.70056 1.37073 1.38384 1.09884 0.85374 0.79084 0.78896 0.77165 1.19576 1.21225 1.18935 1.46216 1.15622 1.55987 1.17443 1.20312 0.81565 0.77780 0.89210 1.90626 1.52643 1.61139 1.42547 1.21783 1.02851 0.96390 0.96786 1.20972 1.03700 0.88718 1.01593 0.85875 1.20370 0.99612 0.96503 0.96459 1.21892 0.92849 0.96381 1.02721 1.21639 0.96610 1.00085 0.97640 1.20317 0.99014 1.01701 0.94046 1.21278 1.01396 0.95316 0.96900 1.22041 0.99631 0.96564 0.93462 1.22986 0.88912 1.01646 1.01362 0.88477 0.93613 0.93728 0.95808 0.91079 0.94081 0.92626 0.76386 0.83785 0.95833 0.91839 0.91873 0.89528 0.93876 0.91950 0.93654 0.92203 0.90107 0.90714 0.91021 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -6.11 5.45 30.60 0.17 -5.94 16 3 C 0.28 14.74 2.24 44.25 0.10 14.84 16 4 H -0.01 -0.42 7.58 -2.38 -0.02 -0.43 16 5 C -0.55 -29.58 8.73 25.60 0.22 -29.36 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -53.22 11.29 21.45 0.24 -52.98 16 9 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 13 N -0.70 -30.00 5.02 -446.08 -2.24 -32.24 16 14 C 0.52 21.20 5.60 87.66 0.49 21.69 16 15 O -0.59 -28.64 12.95 -3.02 -0.04 -28.68 16 16 C -0.16 -4.50 5.91 -13.11 -0.08 -4.57 16 17 C -0.13 -3.21 3.66 -12.72 -0.05 -3.26 16 18 H 0.12 2.29 7.23 -2.39 -0.02 2.28 16 19 C -0.09 -2.49 5.37 29.54 0.16 -2.33 16 20 C -0.10 -2.14 5.68 31.46 0.18 -1.96 16 21 C -0.12 -2.73 5.38 30.49 0.16 -2.57 16 22 C -0.11 -2.00 4.44 28.79 0.13 -1.87 16 23 C -0.11 -1.65 5.43 29.99 0.16 -1.49 16 24 C -0.08 -1.37 6.19 31.76 0.20 -1.17 16 25 C -0.13 -3.31 3.98 -10.51 -0.04 -3.35 16 26 H 0.10 3.10 4.98 -2.39 -0.01 3.09 16 27 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 2.01 5.64 -2.39 -0.01 2.00 16 29 H 0.02 1.19 7.85 -2.38 -0.02 1.17 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.40 14.64 8.54 -92.71 -0.79 13.84 16 34 H 0.14 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.02 0.84 7.18 -2.39 -0.02 0.82 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.45 6.33 -2.39 -0.02 1.43 16 39 H 0.04 1.26 5.23 -2.39 -0.01 1.24 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.04 0.86 7.84 -2.39 -0.02 0.84 16 42 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 1.08 4.58 -2.39 -0.01 1.06 16 45 H 0.07 1.21 8.13 -2.38 -0.02 1.19 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -66.50 338.35 3.03 -63.48 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.17 Total: 30.95 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 2.86 Total: -25.12 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -2.00 Total: -85.21 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.04 Total: -28.68 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -66.50 3.03 -63.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.135 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds