Wall clock time and date at job start Tue Mar 31 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.50696 * 109.47087 * 174.99816 * 3 2 1 6 6 H 1.08003 * 120.00092 * 120.00284 * 5 3 2 7 7 C 1.37879 * 120.00258 * 299.99637 * 5 3 2 8 8 N 1.31512 * 120.00015 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00053 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47444 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47239 * 120.00293 * 9 7 5 12 12 H 1.48503 * 109.47306 * 240.00252 * 9 7 5 13 13 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 14 14 C 1.34777 * 119.99828 * 84.72116 * 13 3 2 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 3 16 16 C 1.50716 * 120.00143 * 180.27721 * 14 13 3 17 17 H 1.08865 * 115.57514 * 34.42247 * 16 14 13 18 18 C 1.52901 * 117.46597 * 180.45810 * 16 14 13 19 19 H 1.11393 * 115.28632 * 359.56460 * 18 16 14 20 20 C 1.52419 * 116.94078 * 222.69653 * 18 16 14 21 21 C 1.53069 * 108.37298 * 207.56073 * 20 18 16 22 22 C 1.53069 * 108.41479 * 82.64422 * 21 20 18 23 23 C 1.52508 * 115.91212 * 33.77918 * 22 21 20 24 24 C 1.53450 * 114.13030 * 288.11841 * 23 22 21 25 25 C 1.53744 * 109.42405 * 325.65393 * 24 23 22 26 26 C 1.50684 * 60.51265 * 107.19684 * 18 16 14 27 27 H 1.11747 * 117.14974 * 255.13924 * 26 18 16 28 28 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 30 30 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 32 32 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 33 33 H 0.96996 * 120.00441 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00384 * 265.00562 * 13 3 2 35 35 H 1.07350 * 114.94918 * 333.26814 * 20 18 16 36 36 H 1.11125 * 108.19551 * 91.67483 * 20 18 16 37 37 H 1.08586 * 109.80421 * 201.94607 * 21 20 18 38 38 H 1.08633 * 109.77720 * 323.42354 * 21 20 18 39 39 H 1.09761 * 106.83007 * 153.86883 * 22 21 20 40 40 H 1.08388 * 108.38570 * 268.96513 * 22 21 20 41 41 H 1.09787 * 108.92081 * 50.24421 * 23 22 21 42 42 H 1.09917 * 108.69097 * 166.46872 * 23 22 21 43 43 H 1.08205 * 113.48595 * 92.10719 * 24 23 22 44 44 H 1.11306 * 107.64504 * 208.37787 * 24 23 22 45 45 H 1.11005 * 108.04821 * 225.34253 * 25 24 23 46 46 H 1.09554 * 110.54933 * 339.76315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5418 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8800 1.3812 10 1 6.5987 1.5451 0.1937 11 1 6.3999 1.6156 2.6092 12 1 6.4961 -0.5191 1.4628 13 7 1.6525 2.0975 -1.2518 14 6 0.4331 2.6595 -1.3689 15 8 -0.3415 2.6275 -0.4362 16 6 0.0320 3.3279 -2.6588 17 1 0.4247 2.8722 -3.5662 18 6 -1.3605 3.9559 -2.7244 19 1 -1.9715 3.8564 -1.7984 20 6 -2.1614 3.7279 -4.0010 21 6 -3.1225 4.9051 -4.1844 22 6 -2.3571 6.0563 -4.8416 23 6 -1.2725 5.6540 -5.8354 24 6 -0.0252 5.0382 -5.1875 25 6 0.2277 5.7077 -3.8268 26 6 -0.1481 4.8469 -2.6420 27 1 0.0585 5.3372 -1.6593 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8292 -0.0617 2.9496 34 1 2.2719 2.1231 -1.9978 35 1 -1.5713 3.5571 -4.8814 36 1 -2.7819 2.8163 -3.8632 37 1 -3.9469 4.6103 -4.8267 38 1 -3.4948 5.2297 -3.2169 39 1 -3.0964 6.6630 -5.3801 40 1 -1.9413 6.6809 -4.0594 41 1 -1.6946 4.9379 -6.5525 42 1 -0.9724 6.5428 -6.4082 43 1 -0.0647 3.9593 -5.1156 44 1 0.8425 5.2593 -5.8488 45 1 1.3097 5.9453 -3.7562 46 1 -0.2800 6.6771 -3.7750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597508466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:02 Heat of formation + Delta-G solvation = -36.564275 kcal Electronic energy + Delta-G solvation = -22809.147534 eV Core-core repulsion = 19698.465262 eV Total energy + Delta-G solvation = -3110.682272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12734 -38.27731 -35.33938 -34.45961 -32.68126 -32.28578 -30.84723 -28.06100 -27.13213 -26.88075 -23.91005 -22.68449 -21.21566 -20.70232 -19.75731 -19.30113 -18.66362 -17.07980 -15.91742 -15.51601 -15.43688 -15.00940 -14.68306 -14.32926 -14.08170 -13.61074 -13.46186 -13.26699 -12.66902 -12.48035 -12.31350 -11.96305 -11.86468 -11.54621 -11.46815 -11.25474 -11.23679 -11.11815 -10.94053 -10.82043 -10.71796 -10.28471 -10.25861 -10.20017 -10.10302 -9.61013 -9.55608 -9.49985 -9.00272 -8.85462 -8.47056 -7.74108 -6.10176 -4.19255 3.22327 3.24673 3.32452 3.35196 4.04443 4.18122 4.37756 4.62324 4.71889 4.74867 4.89572 4.96885 5.04597 5.12739 5.20182 5.21313 5.32650 5.34721 5.61065 5.65992 5.70742 5.79974 5.84315 5.89393 5.90346 6.00347 6.07521 6.10139 6.19245 6.23394 6.34645 6.38393 6.42899 6.50194 6.53619 6.70626 7.08555 7.24134 7.41632 7.53375 7.65951 7.78643 7.94523 8.21774 8.75906 8.82864 9.24253 9.48953 10.95207 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.003982 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.100827 B = 7029.746140 C = 7687.289287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.530 3.470 15 O -0.552 6.552 16 C -0.192 4.192 17 H 0.114 0.886 18 C -0.109 4.109 19 H 0.111 0.889 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.109 4.109 24 C -0.120 4.120 25 C -0.090 4.090 26 C -0.106 4.106 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.039 0.961 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.263 0.737 34 H 0.388 0.612 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 8.993 -15.104 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.315 3.685 15 O -0.432 6.432 16 C -0.213 4.213 17 H 0.132 0.868 18 C -0.128 4.128 19 H 0.129 0.871 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.159 4.159 23 C -0.146 4.146 24 C -0.158 4.158 25 C -0.127 4.127 26 C -0.124 4.124 27 H 0.122 0.878 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.220 0.780 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.077 8.865 -14.224 19.060 hybrid contribution 1.434 -0.170 -0.224 1.462 sum -7.642 8.695 -14.448 18.513 Atomic orbital electron populations 1.21839 0.98353 0.97934 1.01295 1.21929 0.92627 0.99885 1.02179 1.18766 0.94125 0.89143 0.81163 0.93447 1.21286 0.90811 1.38771 1.06204 0.92083 1.24889 0.98554 0.94864 0.95415 1.69906 1.34987 1.37745 1.09369 0.86416 0.84977 0.77750 0.78094 1.19757 1.20907 1.20890 1.46421 1.14369 1.56044 1.18372 1.19462 0.82534 0.78835 0.87672 1.90644 1.51739 1.60280 1.40494 1.22493 1.03797 0.96543 0.98499 0.86823 1.22160 0.89382 1.01483 0.99745 0.87134 1.21306 0.97879 0.97773 0.96423 1.21438 0.97328 0.95606 1.00504 1.21483 0.97149 0.98483 0.98751 1.21559 0.95111 1.00379 0.97585 1.22044 0.97125 1.00675 0.95914 1.21161 1.01377 0.98019 0.92114 1.21798 1.00717 0.90021 0.99892 0.87791 0.93224 0.94157 0.95969 0.95125 0.88361 0.92666 0.78037 0.89932 0.92771 0.92481 0.91435 0.93522 0.91591 0.92617 0.92563 0.90587 0.93083 0.92535 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.15 0.32 -2.82 16 2 C -0.13 -3.16 5.45 -26.74 -0.15 -3.30 16 3 C 0.27 6.88 2.24 -69.09 -0.15 6.73 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 6 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.93 11.29 55.43 0.63 -24.31 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.71 -14.89 5.03 -54.93 -0.28 -15.16 16 14 C 0.53 10.62 6.17 -10.98 -0.07 10.55 16 15 O -0.55 -12.99 13.27 5.55 0.07 -12.91 16 16 C -0.19 -2.87 5.38 -91.83 -0.49 -3.36 16 17 H 0.11 1.50 6.90 -52.01 -0.36 1.14 16 18 C -0.11 -1.45 4.56 -92.13 -0.42 -1.87 16 19 H 0.11 1.72 7.69 -50.55 -0.39 1.34 16 20 C -0.10 -1.03 4.80 -26.99 -0.13 -1.16 16 21 C -0.11 -1.03 6.06 -26.66 -0.16 -1.19 16 22 C -0.12 -1.03 5.06 -26.95 -0.14 -1.16 16 23 C -0.11 -0.88 4.99 -26.75 -0.13 -1.01 16 24 C -0.12 -1.09 4.96 -26.11 -0.13 -1.22 16 25 C -0.09 -0.92 4.96 -27.25 -0.14 -1.05 16 26 C -0.11 -1.37 5.61 -92.70 -0.52 -1.89 16 27 H 0.10 1.51 8.36 -50.34 -0.42 1.09 16 28 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 29 H 0.04 0.90 5.63 -51.93 -0.29 0.61 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.39 7.22 8.54 -40.82 -0.35 6.88 16 35 H 0.08 0.82 4.19 -52.84 -0.22 0.60 16 36 H 0.05 0.60 8.31 -50.70 -0.42 0.17 16 37 H 0.06 0.47 8.11 -52.16 -0.42 0.05 16 38 H 0.07 0.65 7.88 -52.13 -0.41 0.24 16 39 H 0.05 0.36 8.20 -51.50 -0.42 -0.07 16 40 H 0.07 0.59 5.83 -52.27 -0.30 0.28 16 41 H 0.06 0.43 8.02 -51.48 -0.41 0.02 16 42 H 0.06 0.41 8.22 -51.41 -0.42 -0.01 16 43 H 0.08 0.73 4.31 -52.37 -0.23 0.51 16 44 H 0.05 0.43 8.33 -50.60 -0.42 0.01 16 45 H 0.06 0.58 8.31 -50.78 -0.42 0.16 16 46 H 0.08 0.71 5.95 -51.61 -0.31 0.40 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -29.39 339.69 -9.91 -39.30 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.72 Total: 7.83 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.71 Total: -15.58 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.35 Total: -39.47 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.39 -9.91 -39.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.732 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds