Wall clock time and date at job start Tue Mar 31 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.50696 * 109.47087 * 174.99816 * 3 2 1 6 6 H 1.08003 * 120.00092 * 120.00284 * 5 3 2 7 7 C 1.37879 * 120.00258 * 299.99637 * 5 3 2 8 8 N 1.31512 * 120.00015 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00053 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47444 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47239 * 120.00293 * 9 7 5 12 12 H 1.48503 * 109.47306 * 240.00252 * 9 7 5 13 13 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 14 14 C 1.34777 * 119.99828 * 84.72116 * 13 3 2 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 3 16 16 C 1.50716 * 120.00143 * 180.27721 * 14 13 3 17 17 H 1.08865 * 115.57514 * 34.42247 * 16 14 13 18 18 C 1.52901 * 117.46597 * 180.45810 * 16 14 13 19 19 H 1.11393 * 115.28632 * 359.56460 * 18 16 14 20 20 C 1.52419 * 116.94078 * 222.69653 * 18 16 14 21 21 C 1.53069 * 108.37298 * 207.56073 * 20 18 16 22 22 C 1.53069 * 108.41479 * 82.64422 * 21 20 18 23 23 C 1.52508 * 115.91212 * 33.77918 * 22 21 20 24 24 C 1.53450 * 114.13030 * 288.11841 * 23 22 21 25 25 C 1.53744 * 109.42405 * 325.65393 * 24 23 22 26 26 C 1.50684 * 60.51265 * 107.19684 * 18 16 14 27 27 H 1.11747 * 117.14974 * 255.13924 * 26 18 16 28 28 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 30 30 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 32 32 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 33 33 H 0.96996 * 120.00441 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00384 * 265.00562 * 13 3 2 35 35 H 1.07350 * 114.94918 * 333.26814 * 20 18 16 36 36 H 1.11125 * 108.19551 * 91.67483 * 20 18 16 37 37 H 1.08586 * 109.80421 * 201.94607 * 21 20 18 38 38 H 1.08633 * 109.77720 * 323.42354 * 21 20 18 39 39 H 1.09761 * 106.83007 * 153.86883 * 22 21 20 40 40 H 1.08388 * 108.38570 * 268.96513 * 22 21 20 41 41 H 1.09787 * 108.92081 * 50.24421 * 23 22 21 42 42 H 1.09917 * 108.69097 * 166.46872 * 23 22 21 43 43 H 1.08205 * 113.48595 * 92.10719 * 24 23 22 44 44 H 1.11306 * 107.64504 * 208.37787 * 24 23 22 45 45 H 1.11005 * 108.04821 * 225.34253 * 25 24 23 46 46 H 1.09554 * 110.54933 * 339.76315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5418 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0049 0.8800 1.3812 10 1 6.5987 1.5451 0.1937 11 1 6.3999 1.6156 2.6092 12 1 6.4961 -0.5191 1.4628 13 7 1.6525 2.0975 -1.2518 14 6 0.4331 2.6595 -1.3689 15 8 -0.3415 2.6275 -0.4362 16 6 0.0320 3.3279 -2.6588 17 1 0.4247 2.8722 -3.5662 18 6 -1.3605 3.9559 -2.7244 19 1 -1.9715 3.8564 -1.7984 20 6 -2.1614 3.7279 -4.0010 21 6 -3.1225 4.9051 -4.1844 22 6 -2.3571 6.0563 -4.8416 23 6 -1.2725 5.6540 -5.8354 24 6 -0.0252 5.0382 -5.1875 25 6 0.2277 5.7077 -3.8268 26 6 -0.1481 4.8469 -2.6420 27 1 0.0585 5.3372 -1.6593 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8292 -0.0617 2.9496 34 1 2.2719 2.1231 -1.9978 35 1 -1.5713 3.5571 -4.8814 36 1 -2.7819 2.8163 -3.8632 37 1 -3.9469 4.6103 -4.8267 38 1 -3.4948 5.2297 -3.2169 39 1 -3.0964 6.6630 -5.3801 40 1 -1.9413 6.6809 -4.0594 41 1 -1.6946 4.9379 -6.5525 42 1 -0.9724 6.5428 -6.4082 43 1 -0.0647 3.9593 -5.1156 44 1 0.8425 5.2593 -5.8488 45 1 1.3097 5.9453 -3.7562 46 1 -0.2800 6.6771 -3.7750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:00 Heat of formation + Delta-G solvation = -52.561788 kcal Electronic energy + Delta-G solvation = -22809.841238 eV Core-core repulsion = 19698.465262 eV Total energy + Delta-G solvation = -3111.375976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.38170 -39.68288 -36.99131 -35.67293 -34.27086 -33.46028 -32.75975 -29.34683 -28.54066 -27.87175 -25.51726 -24.31213 -22.36028 -21.57124 -21.36227 -20.89746 -19.80095 -18.64962 -17.55055 -17.22610 -16.44835 -16.26045 -16.11344 -15.76666 -15.30504 -15.04236 -14.60546 -14.35377 -14.18645 -13.90116 -13.56608 -13.47982 -13.21033 -13.12629 -12.86511 -12.71363 -12.70552 -12.32852 -12.16541 -12.10339 -12.05717 -11.96633 -11.61004 -11.47310 -11.07213 -11.01629 -10.95123 -10.66901 -10.61933 -10.53288 -10.34076 -9.60174 -8.17029 -6.34586 1.43022 1.44028 1.56087 1.73199 2.35244 2.63793 2.93341 3.12429 3.73389 3.79824 3.85872 3.94911 4.11791 4.18686 4.20160 4.34307 4.36483 4.45489 4.46769 4.55302 4.56479 4.74469 4.79218 4.86953 4.96569 5.04319 5.06015 5.08741 5.10308 5.21865 5.23849 5.27919 5.30698 5.36634 5.42250 5.42734 5.50749 5.55297 5.64094 5.69004 5.72840 5.78740 5.93762 6.16393 6.74165 7.04099 7.33162 7.63400 8.88633 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.003982 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.100827 B = 7029.746140 C = 7687.289287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.703 5.703 14 C 0.525 3.475 15 O -0.593 6.593 16 C -0.199 4.199 17 H 0.140 0.860 18 C -0.098 4.098 19 H 0.080 0.920 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.121 4.121 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.086 4.086 26 C -0.091 4.091 27 H 0.081 0.919 28 H 0.023 0.977 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 9.717 -18.075 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.351 5.351 14 C 0.313 3.687 15 O -0.475 6.475 16 C -0.220 4.220 17 H 0.158 0.842 18 C -0.117 4.117 19 H 0.098 0.902 20 C -0.129 4.129 21 C -0.148 4.148 22 C -0.159 4.159 23 C -0.145 4.145 24 C -0.158 4.158 25 C -0.123 4.123 26 C -0.110 4.110 27 H 0.099 0.901 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.483 9.603 -17.236 21.478 hybrid contribution 1.188 -0.363 0.761 1.457 sum -7.295 9.240 -16.475 20.249 Atomic orbital electron populations 1.21670 0.97047 0.99074 1.00183 1.21779 0.93696 0.99220 1.01256 1.18355 0.93662 0.89128 0.81439 0.98765 1.21610 0.91415 1.38856 1.06693 0.91139 1.25788 1.03410 0.94346 0.94980 1.70058 1.37036 1.38402 1.09907 0.85312 0.79024 0.77878 0.78209 1.18442 1.20992 1.20341 1.46217 1.15313 1.56139 1.17414 1.20304 0.81483 0.77967 0.88992 1.90626 1.52755 1.61577 1.42568 1.22409 1.05543 0.97749 0.96301 0.84233 1.22185 0.88652 1.00746 1.00084 0.90163 1.21321 0.97826 0.98359 0.95346 1.21430 0.97514 0.95316 1.00507 1.21481 0.97586 0.98023 0.98792 1.21549 0.94389 1.01104 0.97453 1.22040 0.98311 1.00309 0.95103 1.21183 1.01679 0.97919 0.91565 1.21833 0.99862 0.88870 1.00390 0.90058 0.95765 0.93781 0.93552 0.94064 0.91007 0.92605 0.76354 0.88368 0.93172 0.91049 0.92436 0.92333 0.92274 0.91773 0.91373 0.90978 0.91822 0.92247 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.65 2.24 44.24 0.10 14.75 16 4 H -0.01 -0.35 7.58 -2.39 -0.02 -0.37 16 5 C -0.55 -29.53 8.73 25.60 0.22 -29.31 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -53.14 11.29 21.45 0.24 -52.90 16 9 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 N -0.70 -30.11 5.03 -446.09 -2.24 -32.35 16 14 C 0.52 21.52 6.17 87.66 0.54 22.06 16 15 O -0.59 -29.30 13.27 -3.04 -0.04 -29.34 16 16 C -0.20 -5.81 5.38 -11.57 -0.06 -5.88 16 17 H 0.14 3.36 6.90 -2.46 -0.02 3.34 16 18 C -0.10 -2.56 4.56 -11.77 -0.05 -2.62 16 19 H 0.08 2.62 7.69 -1.09 -0.01 2.61 16 20 C -0.09 -1.79 4.80 30.43 0.15 -1.64 16 21 C -0.11 -1.80 6.06 30.64 0.19 -1.62 16 22 C -0.12 -1.71 5.06 30.45 0.15 -1.55 16 23 C -0.11 -1.34 4.99 30.58 0.15 -1.19 16 24 C -0.12 -1.78 4.96 31.00 0.15 -1.63 16 25 C -0.09 -1.57 4.96 30.26 0.15 -1.42 16 26 C -0.09 -2.30 5.61 -12.14 -0.07 -2.36 16 27 H 0.08 2.43 8.36 -0.89 -0.01 2.42 16 28 H 0.02 1.21 7.84 -2.38 -0.02 1.19 16 29 H 0.04 2.00 5.63 -2.39 -0.01 1.98 16 30 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 4.06 5.95 -2.39 -0.01 4.04 16 33 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.40 14.76 8.54 -92.71 -0.79 13.97 16 35 H 0.10 1.64 4.19 -3.25 -0.01 1.63 16 36 H 0.05 1.03 8.31 -1.24 -0.01 1.02 16 37 H 0.07 0.99 8.11 -2.61 -0.02 0.97 16 38 H 0.06 1.06 7.88 -2.58 -0.02 1.03 16 39 H 0.06 0.70 8.20 -1.98 -0.02 0.69 16 40 H 0.06 0.91 5.83 -2.71 -0.02 0.90 16 41 H 0.06 0.73 8.02 -1.97 -0.02 0.71 16 42 H 0.07 0.73 8.22 -1.90 -0.02 0.71 16 43 H 0.07 1.13 4.31 -2.80 -0.01 1.12 16 44 H 0.06 0.82 8.33 -1.14 -0.01 0.81 16 45 H 0.06 1.07 8.31 -1.30 -0.01 1.06 16 46 H 0.09 1.43 5.95 -2.09 -0.01 1.41 16 Total: -1.00 -65.91 339.69 3.06 -62.85 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.23 Total: 29.43 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 2.85 Total: -22.22 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -2.00 Total: -85.25 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.04 Total: -29.34 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -65.91 3.06 -62.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.286 kcal (2) G-P(sol) polarization free energy of solvation -65.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds