Wall clock time and date at job start Tue Mar 31 2020 02:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47020 * 2 1 4 4 H 1.09001 * 109.47000 * 304.99210 * 3 2 1 5 5 C 1.50706 * 109.46859 * 185.00129 * 3 2 1 6 6 H 1.08000 * 119.99302 * 239.99789 * 5 3 2 7 7 C 1.37871 * 120.00436 * 59.72322 * 5 3 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47154 * 89.99418 * 9 7 5 11 11 H 1.48493 * 109.47010 * 209.99942 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99638 * 9 7 5 13 13 N 1.46493 * 109.47395 * 65.00116 * 3 2 1 14 14 C 1.34784 * 119.99775 * 274.99719 * 13 3 2 15 15 O 1.21277 * 119.99957 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99979 * 180.02562 * 14 13 3 17 17 C 1.50918 * 117.30772 * 250.69929 * 16 14 13 18 18 H 1.08999 * 117.53982 * 144.80823 * 17 16 14 19 19 C 1.54609 * 123.58429 * 345.90886 * 17 16 14 20 20 C 1.54825 * 102.35134 * 235.49678 * 19 17 16 21 21 C 1.49148 * 109.53657 * 303.57197 * 20 19 17 22 22 C 1.51240 * 120.89014 * 82.01083 * 21 20 19 23 23 C 1.54367 * 111.08492 * 35.28814 * 22 21 20 24 24 C 1.54162 * 109.17886 * 259.00188 * 23 22 21 25 25 C 1.48762 * 112.50917 * 63.92301 * 24 23 22 26 26 H 1.09004 * 111.87650 * 73.56585 * 25 24 23 27 27 H 1.08995 * 109.47136 * 300.00531 * 1 2 3 28 28 H 1.09001 * 109.47218 * 60.00434 * 1 2 3 29 29 H 1.08994 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47136 * 239.99469 * 2 1 3 31 31 H 1.08998 * 109.46713 * 119.99549 * 2 1 3 32 32 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 33 33 H 0.96993 * 120.00535 * 95.00145 * 13 3 2 34 34 H 1.08997 * 115.43819 * 35.19315 * 16 14 13 35 35 H 1.08993 * 110.85832 * 353.75939 * 19 17 16 36 36 H 1.08997 * 110.86279 * 117.19339 * 19 17 16 37 37 H 1.09004 * 109.45919 * 63.58943 * 20 19 17 38 38 H 1.08993 * 109.46282 * 183.56336 * 20 19 17 39 39 H 1.09001 * 107.13172 * 204.93681 * 21 20 19 40 40 H 1.09000 * 107.13178 * 319.13171 * 21 20 19 41 41 H 1.09001 * 109.15767 * 155.70532 * 22 21 20 42 42 H 1.09009 * 109.15509 * 274.92924 * 22 21 20 43 43 H 1.09002 * 109.51965 * 18.91018 * 23 22 21 44 44 H 1.09003 * 109.52102 * 139.02803 * 23 22 21 45 45 H 1.09004 * 108.87444 * 303.14658 * 24 23 22 46 46 H 1.09000 * 108.87698 * 184.71222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1436 0.8733 -1.2252 8 7 3.4067 0.3267 -2.1675 9 14 6.0053 0.8749 -1.3784 10 1 6.5546 -0.3539 -0.7510 11 1 6.3838 0.9095 -2.8138 12 1 6.5573 2.0704 -0.6919 13 7 1.6525 2.0975 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3392 2.6328 0.4340 16 6 0.0367 3.3388 2.6543 17 6 -1.0104 2.6547 3.4989 18 1 -0.9124 2.7301 4.5819 19 6 -1.9045 1.5025 2.9856 20 6 -3.3296 2.0424 3.2588 21 6 -3.4664 2.3799 4.7051 22 6 -2.9606 3.6986 5.2459 23 6 -3.1554 4.8324 4.2166 24 6 -1.8132 5.1127 3.5119 25 6 -1.3340 3.9507 2.7163 26 1 -1.9118 3.8187 1.8015 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8299 -0.0754 -2.9422 33 1 2.2719 2.1232 1.9977 34 1 0.8394 3.8560 3.1798 35 1 -1.7500 1.3369 1.9195 36 1 -1.7206 0.5879 3.5492 37 1 -3.5002 2.9368 2.6595 38 1 -4.0633 1.2816 2.9927 39 1 -4.5266 2.3177 4.9505 40 1 -2.9678 1.5905 5.2676 41 1 -3.5065 3.9447 6.1567 42 1 -1.8997 3.6064 5.4788 43 1 -3.8982 4.5303 3.4782 44 1 -3.4950 5.7335 4.7272 45 1 -1.0640 5.3576 4.2648 46 1 -1.9356 5.9684 2.8478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:26 Heat of formation + Delta-G solvation = -48.272706 kcal Electronic energy + Delta-G solvation = -23188.226018 eV Core-core repulsion = 20077.036031 eV Total energy + Delta-G solvation = -3111.189987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68269 -39.68648 -36.95386 -35.57273 -34.25845 -34.01887 -32.76911 -29.51605 -28.84074 -26.91759 -25.58508 -24.41896 -22.61413 -21.54986 -21.45811 -20.69511 -20.11752 -18.68761 -17.39557 -17.26188 -16.66699 -16.35585 -15.85564 -15.61763 -15.20548 -15.14343 -14.61388 -14.48481 -14.26890 -13.93328 -13.52008 -13.39517 -13.28260 -13.14010 -12.98361 -12.84849 -12.67426 -12.26719 -12.14749 -12.08579 -12.00664 -11.85806 -11.64503 -11.54340 -11.28783 -11.05295 -10.99971 -10.74763 -10.53860 -10.49305 -10.10566 -9.58412 -8.16015 -6.33701 1.44049 1.44787 1.55264 1.77775 2.35085 2.55280 2.92725 3.13024 3.69709 3.75421 3.89701 4.02555 4.07180 4.20139 4.28546 4.36270 4.39801 4.48937 4.55458 4.60155 4.67417 4.76048 4.78281 4.88888 4.95149 5.04474 5.06069 5.08182 5.17279 5.19382 5.24293 5.28110 5.33360 5.42104 5.45714 5.50467 5.55076 5.57124 5.64226 5.66455 5.70326 5.80978 5.95312 6.18265 6.74956 7.05747 7.34089 7.65043 8.89146 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.004077 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.291380 B = 6865.599791 C = 7264.246395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.704 5.704 14 C 0.526 3.474 15 O -0.586 6.586 16 C -0.157 4.157 17 C -0.124 4.124 18 H 0.145 0.855 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.079 4.079 25 C -0.135 4.135 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.139 0.861 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 5.920 17.335 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.352 5.352 14 C 0.314 3.686 15 O -0.468 6.468 16 C -0.177 4.177 17 C -0.142 4.142 18 H 0.162 0.838 19 C -0.137 4.137 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.116 4.116 25 C -0.154 4.154 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.157 0.843 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.104 5.796 16.499 20.715 hybrid contribution 1.288 -0.233 -0.754 1.511 sum -9.816 5.563 15.744 19.370 Atomic orbital electron populations 1.21762 0.97009 0.99018 1.00638 1.21762 0.93785 0.99187 1.01107 1.18329 0.93552 0.89119 0.81391 0.98743 1.21597 0.91499 1.38784 1.06829 0.91128 1.25776 1.03355 0.94350 0.94998 1.70055 1.37060 1.38139 1.10123 0.85369 0.79083 0.78882 0.77149 1.19625 1.21250 1.18909 1.46198 1.15531 1.56080 1.17347 1.20204 0.81500 0.78148 0.88788 1.90628 1.52491 1.61556 1.42135 1.21667 0.95870 1.04119 0.96092 1.23136 0.97522 0.95284 0.98264 0.83764 1.22077 0.95117 0.96574 0.99968 1.21201 0.95146 1.00624 0.97661 1.20323 1.01426 0.98224 0.95171 1.21639 1.01902 0.93562 0.98115 1.21967 0.95816 0.99058 0.97959 1.20380 0.97923 0.95015 0.98299 1.21113 0.95662 0.97740 1.00878 0.90857 0.92673 0.95943 0.93897 0.91151 0.94237 0.92638 0.76349 0.84278 0.93626 0.90856 0.92094 0.92150 0.92694 0.92527 0.90669 0.91290 0.92384 0.90207 0.90929 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.52 71.98 0.61 -5.26 16 2 C -0.12 -6.03 5.45 30.59 0.17 -5.86 16 3 C 0.28 14.64 2.25 44.25 0.10 14.74 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 5 C -0.55 -29.50 8.73 25.60 0.22 -29.27 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.83 5.29 84.65 0.45 1.27 16 8 N -0.92 -53.08 11.27 21.45 0.24 -52.84 16 9 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 13 N -0.70 -29.72 5.02 -446.10 -2.24 -31.96 16 14 C 0.53 21.12 5.49 87.65 0.48 21.60 16 15 O -0.59 -28.28 12.35 -3.02 -0.04 -28.32 16 16 C -0.16 -4.48 5.94 -13.11 -0.08 -4.56 16 17 C -0.12 -2.93 4.42 -10.30 -0.05 -2.98 16 18 H 0.15 2.62 5.48 -2.39 -0.01 2.61 16 19 C -0.10 -2.63 5.95 31.77 0.19 -2.44 16 20 C -0.11 -2.35 5.43 29.99 0.16 -2.19 16 21 C -0.11 -1.84 4.44 28.79 0.13 -1.72 16 22 C -0.12 -1.58 5.38 30.48 0.16 -1.42 16 23 C -0.11 -1.69 5.68 31.45 0.18 -1.51 16 24 C -0.08 -1.48 5.49 29.64 0.16 -1.32 16 25 C -0.14 -3.47 3.53 -12.41 -0.04 -3.52 16 26 H 0.07 2.41 6.44 -2.38 -0.02 2.39 16 27 H 0.05 2.42 3.93 -2.39 -0.01 2.41 16 28 H 0.02 1.11 7.85 -2.39 -0.02 1.09 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 3.97 5.93 -2.39 -0.01 3.96 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.40 14.54 8.54 -92.71 -0.79 13.74 16 34 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.05 1.57 4.93 -2.39 -0.01 1.56 16 36 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 37 H 0.06 1.45 4.59 -2.38 -0.01 1.43 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 40 H 0.06 0.88 7.84 -2.39 -0.02 0.86 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.93 5.22 -2.38 -0.01 0.92 16 43 H 0.06 1.01 6.33 -2.39 -0.02 1.00 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 1.16 8.06 -2.38 -0.02 1.14 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.53 333.50 3.02 -62.51 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.18 Total: 30.55 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 2.85 Total: -24.44 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.00 Total: -84.80 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.04 Total: -28.32 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -65.53 3.02 -62.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.237 kcal (2) G-P(sol) polarization free energy of solvation -65.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds