Wall clock time and date at job start Tue Mar 31 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47496 * 2 1 4 4 H 1.09011 * 109.46841 * 305.00385 * 3 2 1 5 5 C 1.50698 * 109.47659 * 184.99908 * 3 2 1 6 6 H 1.07996 * 120.00059 * 239.99934 * 5 3 2 7 7 C 1.37881 * 119.99786 * 60.00254 * 5 3 2 8 8 N 1.31518 * 120.00035 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00051 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47059 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47143 * 209.99616 * 9 7 5 12 12 H 1.48501 * 109.46988 * 329.99737 * 9 7 5 13 13 N 1.46498 * 109.46934 * 64.99886 * 3 2 1 14 14 C 1.34778 * 120.00121 * 275.00445 * 13 3 2 15 15 O 1.21276 * 119.99969 * 359.97438 * 14 13 3 16 16 C 1.50944 * 120.00165 * 179.97438 * 14 13 3 17 17 H 1.08480 * 115.68638 * 328.02285 * 16 14 13 18 18 C 1.53363 * 116.87924 * 112.96578 * 16 14 13 19 19 H 1.11495 * 114.70482 * 358.58548 * 18 16 14 20 20 C 1.50552 * 118.57514 * 220.54894 * 18 16 14 21 21 C 1.55507 * 113.22205 * 310.39031 * 20 18 16 22 22 C 1.54902 * 104.09284 * 247.68954 * 21 20 18 23 23 C 1.52440 * 113.57973 * 85.06402 * 22 21 20 24 24 C 1.49318 * 126.96261 * 359.88398 * 23 22 21 25 25 C 1.51253 * 119.56563 * 13.53672 * 24 23 22 26 26 C 1.50599 * 60.48104 * 107.23731 * 18 16 14 27 27 H 1.11558 * 116.32752 * 254.97656 * 26 18 16 28 28 H 1.08999 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47214 * 300.00029 * 1 2 3 30 30 H 1.08996 * 109.47326 * 59.99835 * 1 2 3 31 31 H 1.09000 * 109.47214 * 239.99970 * 2 1 3 32 32 H 1.08996 * 109.47326 * 120.00165 * 2 1 3 33 33 H 0.96995 * 120.00429 * 180.02562 * 8 7 5 34 34 H 0.96998 * 120.00376 * 95.00616 * 13 3 2 35 35 H 1.09499 * 110.66884 * 188.57363 * 20 18 16 36 36 H 1.10043 * 109.89047 * 70.77372 * 20 18 16 37 37 H 1.04374 * 116.02558 * 17.80942 * 21 20 18 38 38 H 1.11703 * 106.63615 * 136.34416 * 21 20 18 39 39 H 1.09126 * 109.16061 * 207.12920 * 22 21 20 40 40 H 1.09690 * 107.87042 * 324.02345 * 22 21 20 41 41 H 1.11244 * 105.58934 * 125.55143 * 23 22 21 42 42 H 1.11449 * 105.93780 * 233.48963 * 23 22 21 43 43 H 1.11684 * 107.08103 * 134.52274 * 24 23 22 44 44 H 1.10408 * 110.23451 * 246.66444 * 24 23 22 45 45 H 1.06452 * 115.11329 * 41.02059 * 25 24 23 46 46 H 1.13149 * 105.28762 * 152.28964 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8800 -1.3812 10 1 6.5538 -0.3520 -0.7599 11 1 6.3835 0.9214 -2.8165 12 1 6.5575 2.0720 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3393 2.6326 0.4342 16 6 0.0356 3.3387 2.6569 17 1 0.4572 2.9119 3.5608 18 6 -0.1558 4.8597 2.6139 19 1 0.0466 5.3269 1.6220 20 6 0.3486 5.6819 3.7698 21 6 -0.1082 5.1394 5.1537 22 6 -1.0795 6.2242 5.6822 23 6 -2.5096 6.0587 5.1811 24 6 -3.0237 4.9944 4.2686 25 6 -2.1751 3.7728 3.9940 26 6 -1.3609 3.9630 2.7222 27 1 -1.9719 3.8415 1.7967 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8292 -0.0618 -2.9495 34 1 2.2719 2.1231 1.9978 35 1 0.0142 6.7208 3.6801 36 1 1.4489 5.6991 3.7651 37 1 -0.4455 4.1518 5.1698 38 1 0.7839 5.1829 5.8245 39 1 -1.0778 6.2056 6.7733 40 1 -0.6983 7.2018 5.3626 41 1 -3.1449 6.0313 6.0938 42 1 -2.7903 7.0374 4.7279 43 1 -3.9816 4.6221 4.7058 44 1 -3.3307 5.4342 3.3036 45 1 -1.6670 3.3759 4.8411 46 1 -2.9102 2.9462 3.7561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:05 Heat of formation + Delta-G solvation = -43.144001 kcal Electronic energy + Delta-G solvation = -22693.093931 eV Core-core repulsion = 19582.126341 eV Total energy + Delta-G solvation = -3110.967590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25966 -39.45435 -36.94482 -35.64928 -34.26466 -33.73225 -32.75825 -29.59465 -28.82406 -27.60829 -25.55317 -24.33939 -22.45212 -21.40921 -21.04281 -20.74162 -20.23533 -18.77246 -17.58978 -17.19762 -16.42914 -16.14407 -16.10691 -15.36848 -15.31172 -14.98688 -14.59497 -14.34637 -14.12569 -13.86798 -13.62632 -13.43731 -13.39548 -13.16508 -13.02597 -12.89453 -12.73429 -12.66748 -12.17712 -12.07229 -11.95831 -11.75166 -11.60780 -11.28082 -11.15826 -11.05501 -10.79160 -10.64189 -10.59103 -10.45953 -10.24804 -9.58857 -8.16484 -6.34142 1.43901 1.44635 1.55197 1.75221 2.35549 2.64024 2.95114 3.12852 3.68847 3.75517 3.79823 3.93345 3.95362 4.11196 4.17328 4.28208 4.35295 4.42481 4.47468 4.56211 4.63941 4.75472 4.77454 4.84955 4.89019 4.95263 5.05040 5.09156 5.11392 5.17562 5.25323 5.30021 5.32479 5.39054 5.43411 5.46725 5.55531 5.56759 5.61013 5.65233 5.79522 5.82666 5.94633 6.17041 6.74498 7.05477 7.33620 7.64847 8.88912 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027568 B = 0.003929 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.417138 B = 7124.222334 C = 7828.499964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.703 5.703 14 C 0.523 3.477 15 O -0.594 6.594 16 C -0.204 4.204 17 H 0.141 0.859 18 C -0.092 4.092 19 H 0.078 0.922 20 C -0.087 4.087 21 C -0.129 4.129 22 C -0.101 4.101 23 C -0.113 4.113 24 C -0.094 4.094 25 C -0.078 4.078 26 C -0.087 4.087 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.402 0.598 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 9.719 17.973 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.351 5.351 14 C 0.311 3.689 15 O -0.476 6.476 16 C -0.225 4.225 17 H 0.159 0.841 18 C -0.111 4.111 19 H 0.097 0.903 20 C -0.124 4.124 21 C -0.166 4.166 22 C -0.139 4.139 23 C -0.151 4.151 24 C -0.132 4.132 25 C -0.115 4.115 26 C -0.105 4.105 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.502 9.620 17.127 21.405 hybrid contribution 1.136 -0.296 -0.702 1.368 sum -7.366 9.324 16.425 20.272 Atomic orbital electron populations 1.21665 0.97030 0.99075 1.00193 1.21777 0.93718 0.99219 1.01232 1.18346 0.93606 0.89127 0.81456 0.98781 1.21587 0.91456 1.38938 1.06705 0.91149 1.25789 1.03404 0.94356 0.94967 1.70053 1.37092 1.38347 1.09904 0.85363 0.79022 0.78897 0.77165 1.19590 1.21222 1.18913 1.46207 1.15505 1.55995 1.17409 1.20409 0.81479 0.77896 0.89089 1.90622 1.52723 1.61686 1.42602 1.22547 1.05169 0.98403 0.96349 0.84102 1.21773 1.00060 0.88874 1.00396 0.90333 1.21482 1.00374 0.98587 0.91951 1.22350 0.99491 0.99782 0.94967 1.21953 0.93444 0.98362 1.00121 1.20984 0.96810 0.98168 0.99133 1.20653 0.98042 0.94930 0.99548 1.20676 0.98062 0.97540 0.95176 1.22130 0.88593 0.99824 1.00001 0.89795 0.93556 0.93734 0.95779 0.91036 0.94084 0.92607 0.76362 0.90176 0.91745 0.89023 0.92692 0.91661 0.91692 0.93105 0.93663 0.92149 0.93086 0.88564 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.51 71.98 0.61 -5.09 16 2 C -0.12 -6.10 5.45 30.59 0.17 -5.94 16 3 C 0.28 14.65 2.24 44.24 0.10 14.75 16 4 H -0.01 -0.36 7.58 -2.38 -0.02 -0.38 16 5 C -0.55 -29.57 8.73 25.60 0.22 -29.35 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -53.14 11.29 21.45 0.24 -52.90 16 9 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 13 N -0.70 -30.01 5.02 -445.82 -2.24 -32.25 16 14 C 0.52 21.34 6.15 87.73 0.54 21.88 16 15 O -0.59 -29.20 13.27 -3.02 -0.04 -29.24 16 16 C -0.20 -5.88 5.43 -11.31 -0.06 -5.94 16 17 H 0.14 3.33 7.56 -2.66 -0.02 3.31 16 18 C -0.09 -2.34 5.61 -12.24 -0.07 -2.41 16 19 H 0.08 2.37 8.32 -1.03 -0.01 2.37 16 20 C -0.09 -1.62 5.74 30.66 0.18 -1.44 16 21 C -0.13 -1.94 5.11 32.11 0.16 -1.77 16 22 C -0.10 -1.32 5.61 31.06 0.17 -1.14 16 23 C -0.11 -1.58 5.55 29.23 0.16 -1.42 16 24 C -0.09 -1.54 5.31 28.85 0.15 -1.39 16 25 C -0.08 -1.47 4.38 29.76 0.13 -1.34 16 26 C -0.09 -2.24 4.60 -11.80 -0.05 -2.30 16 27 H 0.08 2.69 7.67 -1.00 -0.01 2.68 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 2.01 5.65 -2.39 -0.01 1.99 16 30 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 31 H 0.07 4.03 5.95 -2.39 -0.01 4.02 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.40 14.68 8.54 -92.71 -0.79 13.89 16 35 H 0.08 1.35 6.78 -2.12 -0.01 1.34 16 36 H 0.06 1.20 8.23 -1.83 -0.02 1.18 16 37 H 0.09 1.42 3.60 -4.72 -0.02 1.40 16 38 H 0.05 0.74 8.33 -0.92 -0.01 0.73 16 39 H 0.06 0.71 8.15 -2.32 -0.02 0.70 16 40 H 0.06 0.80 7.09 -2.02 -0.01 0.79 16 41 H 0.05 0.61 8.24 -1.17 -0.01 0.60 16 42 H 0.04 0.63 8.30 -1.06 -0.01 0.62 16 43 H 0.06 0.85 8.30 -0.93 -0.01 0.84 16 44 H 0.05 0.93 7.96 -1.63 -0.01 0.92 16 45 H 0.10 1.57 5.66 -3.70 -0.02 1.55 16 46 H 0.05 0.90 8.40 -0.09 0.00 0.90 16 Total: -1.00 -65.79 344.64 3.10 -62.69 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.25 Total: 28.85 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 2.87 Total: -21.65 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.00 Total: -85.15 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.04 Total: -29.24 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -65.79 3.10 -62.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.542 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds