Wall clock time and date at job start Tue Mar 31 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47185 * 2 1 4 4 H 1.08997 * 110.81240 * 51.66637 * 3 2 1 5 5 C 1.54887 * 110.75420 * 288.33360 * 3 2 1 6 6 C 1.54268 * 104.19477 * 203.74252 * 5 3 2 7 7 C 1.53877 * 106.59936 * 23.60692 * 6 5 3 8 8 C 1.54273 * 106.59694 * 0.02562 * 7 6 5 9 9 H 1.08995 * 110.48588 * 95.19758 * 8 7 6 10 10 C 1.50700 * 110.48582 * 217.70968 * 8 7 6 11 11 O 1.21283 * 119.99803 * 118.54338 * 10 8 7 12 12 N 1.34777 * 119.99675 * 298.82213 * 10 8 7 13 13 C 1.46921 * 120.63392 * 359.43977 * 12 10 8 14 14 C 1.52760 * 109.00994 * 233.58899 * 13 12 10 15 15 C 1.53036 * 109.38235 * 305.58739 * 14 13 12 16 16 C 1.53035 * 109.53955 * 61.24292 * 15 14 13 17 17 H 1.08998 * 109.52797 * 58.59747 * 16 15 14 18 18 C 1.50701 * 109.50156 * 178.68122 * 16 15 14 19 19 H 1.08000 * 120.00073 * 119.83153 * 18 16 15 20 20 C 1.37879 * 119.99944 * 299.84134 * 18 16 15 21 21 N 1.31513 * 119.99682 * 359.97438 * 20 18 16 22 22 Si 1.86793 * 119.99938 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47111 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47321 * 119.99548 * 22 20 18 25 25 H 1.48501 * 109.47028 * 239.99792 * 22 20 18 26 26 C 1.46924 * 120.62813 * 179.72946 * 12 10 8 27 27 H 1.09000 * 109.46795 * 299.99560 * 1 2 3 28 28 H 1.08999 * 109.47749 * 59.99683 * 1 2 3 29 29 H 1.08997 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46795 * 240.00440 * 2 1 3 31 31 H 1.08991 * 109.47493 * 120.00521 * 2 1 3 32 32 H 1.09007 * 110.48845 * 85.06784 * 5 3 2 33 33 H 1.08999 * 110.60486 * 322.47425 * 5 3 2 34 34 H 1.09002 * 110.03123 * 264.32805 * 6 5 3 35 35 H 1.08996 * 110.04053 * 142.89519 * 6 5 3 36 36 H 1.08997 * 110.03868 * 240.72334 * 7 6 5 37 37 H 1.08996 * 110.03099 * 119.28476 * 7 6 5 38 38 H 1.09004 * 109.58490 * 353.42409 * 13 12 10 39 39 H 1.09002 * 109.58518 * 113.84767 * 13 12 10 40 40 H 1.09005 * 109.56000 * 185.55371 * 14 13 12 41 41 H 1.08994 * 109.38732 * 65.51586 * 14 13 12 42 42 H 1.09002 * 109.46377 * 301.22063 * 15 14 13 43 43 H 1.08997 * 109.45030 * 181.25569 * 15 14 13 44 44 H 0.97005 * 119.99706 * 180.02562 * 21 20 18 45 45 H 1.09006 * 109.58353 * 246.15683 * 26 12 10 46 46 H 1.09008 * 109.58903 * 6.57099 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5733 2.0183 0.7992 5 6 1.7935 2.1119 -1.3748 6 6 2.8427 3.2409 -1.4395 7 6 3.9808 2.8386 -0.4851 8 6 3.5836 1.4788 0.1257 9 1 4.0341 0.6615 -0.4373 10 6 3.9960 1.4104 1.5736 11 8 3.1563 1.2695 2.4373 12 7 5.2975 1.5114 1.9089 13 6 6.3268 1.6762 0.8736 14 6 7.3909 0.5950 1.0532 15 6 7.9267 0.6428 2.4859 16 6 6.7861 0.3682 3.4684 17 1 6.3490 -0.6074 3.2559 18 6 7.3210 0.3835 4.8772 19 1 6.9363 1.0947 5.5932 20 6 8.3016 -0.5103 5.2520 21 7 8.7698 -1.3764 4.3802 22 14 8.9651 -0.4908 6.9981 23 1 8.2786 0.5712 7.7767 24 1 8.7200 -1.8094 7.6355 25 1 10.4247 -0.2183 6.9699 26 6 5.7146 1.4525 3.3165 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8898 32 1 0.7857 2.5245 -1.4230 33 1 1.9513 1.3977 -2.1830 34 1 2.3988 4.1822 -1.1154 35 1 3.2246 3.3381 -2.4558 36 1 4.0891 3.5845 0.3022 37 1 4.9148 2.7405 -1.0383 38 1 5.8721 1.5792 -0.1124 39 1 6.7884 2.6589 0.9703 40 1 8.2083 0.7675 0.3530 41 1 6.9488 -0.3829 0.8626 42 1 8.3470 1.6290 2.6837 43 1 8.7019 -0.1135 2.6089 44 1 9.4595 -2.0055 4.6440 45 1 6.1251 2.4166 3.6166 46 1 4.8560 1.2080 3.9421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:51 Heat of formation + Delta-G solvation = -71.146543 kcal Electronic energy + Delta-G solvation = -23124.501649 eV Core-core repulsion = 20012.319778 eV Total energy + Delta-G solvation = -3112.181871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21082 -37.88585 -36.47661 -33.69531 -33.01197 -31.32391 -30.51983 -28.94986 -27.64521 -25.05710 -24.67928 -22.74240 -21.68567 -21.12699 -20.09261 -19.35763 -18.30638 -16.76223 -16.26081 -15.63184 -15.33856 -14.69575 -14.46726 -14.35011 -13.97929 -13.54662 -13.35545 -13.09026 -12.89642 -12.80701 -12.62060 -12.12467 -12.01018 -11.93604 -11.68171 -11.35824 -11.11649 -10.98574 -10.81412 -10.73102 -10.62483 -10.54755 -10.49184 -10.34740 -10.21668 -9.94186 -9.76611 -9.43075 -9.15771 -8.79727 -8.38484 -7.85008 -6.01862 -4.08757 3.12455 3.28774 3.36946 3.41128 3.59976 4.42803 4.43219 4.55333 4.67026 5.08868 5.11248 5.24253 5.27556 5.31585 5.35949 5.43994 5.50446 5.57073 5.59690 5.65680 5.72081 5.81025 5.85044 5.86033 5.94930 6.00192 6.11276 6.16850 6.18615 6.22292 6.34616 6.39788 6.45045 6.49349 6.52960 6.68097 6.83345 7.01396 7.18671 7.34765 7.69664 7.93103 8.07042 8.08714 8.38428 8.72740 8.95405 9.56191 11.03730 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.004246 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.164564 B = 6592.811814 C = 7063.483181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.070 4.070 4 H 0.087 0.913 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.111 4.111 9 H 0.097 0.903 10 C 0.515 3.485 11 O -0.550 6.550 12 N -0.602 5.602 13 C 0.107 3.893 14 C -0.136 4.136 15 C -0.112 4.112 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.513 4.513 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.117 3.883 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.095 0.905 44 H 0.259 0.741 45 H 0.053 0.947 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 6.535 -14.087 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.088 4.088 4 H 0.105 0.895 5 C -0.157 4.157 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.132 4.132 9 H 0.115 0.885 10 C 0.303 3.697 11 O -0.429 6.429 12 N -0.334 5.334 13 C -0.016 4.016 14 C -0.175 4.175 15 C -0.150 4.150 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.552 4.552 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.004 4.004 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.658 6.332 -13.628 17.863 hybrid contribution 0.693 -0.098 0.895 1.136 sum -8.965 6.234 -12.733 16.774 Atomic orbital electron populations 1.21733 0.95998 1.01240 1.01548 1.21493 0.95792 0.95944 1.02063 1.21990 0.92786 0.96752 0.97321 0.89477 1.22452 0.98700 0.97392 0.97203 1.22122 0.95999 0.98712 0.99237 1.22243 0.98681 0.95703 0.98744 1.22220 0.97750 0.99354 0.93876 0.88522 1.20432 0.82264 0.76404 0.90635 1.90642 1.50475 1.50409 1.51335 1.48280 1.05447 1.70790 1.08898 1.21784 0.89872 0.99354 0.90638 1.21942 0.97080 0.97959 1.00485 1.21618 1.01467 1.01299 0.90593 1.18968 0.90722 0.93277 0.94951 0.95339 1.21127 1.20707 1.17717 0.95619 0.92456 1.24936 0.96440 0.95183 0.97263 1.69887 1.28929 1.20125 1.33858 0.86530 0.78645 0.77943 0.84863 1.19725 1.21022 1.21047 1.21974 0.99386 1.00163 0.78909 0.92676 0.93053 0.93092 0.92411 0.91304 0.91667 0.91576 0.91854 0.91773 0.91370 0.90874 0.90685 0.92138 0.92517 0.92472 0.94629 0.88714 0.93059 0.92879 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.81 37.16 0.36 -1.20 16 2 C -0.12 -1.41 5.43 -26.73 -0.15 -1.56 16 3 C -0.07 -0.87 1.88 -88.62 -0.17 -1.03 16 4 H 0.09 1.26 7.53 -51.93 -0.39 0.87 16 5 C -0.12 -1.15 5.69 -25.07 -0.14 -1.29 16 6 C -0.12 -1.13 6.80 -25.61 -0.17 -1.31 16 7 C -0.12 -1.28 5.12 -25.61 -0.13 -1.41 16 8 C -0.11 -1.48 1.78 -90.10 -0.16 -1.64 16 9 H 0.10 1.22 7.66 -51.93 -0.40 0.82 16 10 C 0.52 9.32 6.95 -10.98 -0.08 9.25 16 11 O -0.55 -11.86 14.99 5.55 0.08 -11.78 16 12 N -0.60 -11.21 2.98 -173.03 -0.52 -11.73 16 13 C 0.11 1.65 5.58 -3.94 -0.02 1.63 16 14 C -0.14 -2.43 6.06 -26.84 -0.16 -2.59 16 15 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 16 C 0.04 0.99 2.25 -91.65 -0.21 0.78 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 18 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 C 0.12 2.56 5.66 -3.71 -0.02 2.54 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.63 7.99 -51.93 -0.41 0.22 16 31 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 32 H 0.06 0.57 8.09 -51.92 -0.42 0.15 16 33 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 37 H 0.07 0.70 6.62 -51.93 -0.34 0.36 16 38 H 0.07 0.95 4.34 -51.93 -0.23 0.72 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 2.42 6.05 -51.93 -0.31 2.10 16 44 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.08 1.85 7.01 -51.92 -0.36 1.48 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -29.59 346.13 -9.44 -39.03 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.27 Total: 0.63 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.57 Total: -13.12 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.11 Total: -36.15 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.59 -9.44 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.115 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds