Wall clock time and date at job start Tue Mar 31 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46928 * 2 1 4 4 H 1.09004 * 110.01923 * 53.32290 * 3 2 1 5 5 C 1.54263 * 110.03279 * 291.88242 * 3 2 1 6 6 C 1.54888 * 104.19676 * 217.10945 * 5 3 2 7 7 C 1.54959 * 102.78060 * 37.91061 * 6 5 3 8 8 C 1.53877 * 110.03243 * 174.71221 * 3 2 1 9 9 H 1.08996 * 110.03757 * 238.61263 * 8 3 2 10 10 C 1.50700 * 110.03150 * 0.02562 * 8 3 2 11 11 O 1.21287 * 119.99652 * 88.56465 * 10 8 3 12 12 N 1.34766 * 119.99969 * 268.83747 * 10 8 3 13 13 C 1.46933 * 120.63316 * 359.72389 * 12 10 8 14 14 C 1.53196 * 108.77531 * 126.36615 * 13 12 10 15 15 C 1.53038 * 109.31127 * 54.63870 * 14 13 12 16 16 C 1.53039 * 109.53801 * 298.63598 * 15 14 13 17 17 H 1.09003 * 109.49627 * 301.41070 * 16 15 14 18 18 C 1.50706 * 109.49485 * 181.34864 * 16 15 14 19 19 H 1.08004 * 119.99568 * 239.99431 * 18 16 15 20 20 C 1.37875 * 120.00288 * 59.99979 * 18 16 15 21 21 N 1.31514 * 119.99597 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00208 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47004 * 59.99879 * 22 20 18 24 24 H 1.48500 * 109.46924 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47024 * 299.99802 * 22 20 18 26 26 C 1.46929 * 120.63408 * 179.44873 * 12 10 8 27 27 H 1.09001 * 109.47035 * 60.00617 * 1 2 3 28 28 H 1.09004 * 109.46757 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47670 * 299.99954 * 1 2 3 30 30 H 1.08994 * 109.47844 * 239.99521 * 2 1 3 31 31 H 1.09001 * 109.47035 * 119.99383 * 2 1 3 32 32 H 1.09008 * 110.48650 * 335.78123 * 5 3 2 33 33 H 1.08992 * 110.48887 * 98.29431 * 5 3 2 34 34 H 1.08996 * 110.75930 * 156.25881 * 6 5 3 35 35 H 1.09002 * 110.75221 * 279.43900 * 6 5 3 36 36 H 1.09004 * 110.53494 * 203.43725 * 7 6 5 37 37 H 1.09003 * 110.47484 * 80.77049 * 7 6 5 38 38 H 1.08996 * 109.58775 * 246.15600 * 13 12 10 39 39 H 1.09004 * 109.57886 * 6.44260 * 13 12 10 40 40 H 1.08991 * 109.49912 * 174.58999 * 14 13 12 41 41 H 1.09003 * 109.49777 * 294.68954 * 14 13 12 42 42 H 1.09005 * 109.45960 * 58.65563 * 15 14 13 43 43 H 1.08994 * 109.46095 * 178.61361 * 15 14 13 44 44 H 0.97006 * 119.99818 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58251 * 353.41325 * 26 12 10 46 46 H 1.08993 * 109.58813 * 113.84308 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5875 1.9982 0.8214 5 6 1.7068 2.1208 -1.3449 6 6 2.9365 3.0173 -1.6330 7 6 4.1187 2.1482 -1.1348 8 6 3.5728 1.4597 0.1332 9 1 3.8644 2.0237 1.0191 10 6 4.0991 0.0503 0.2220 11 8 4.3775 -0.5578 -0.7898 12 7 4.2551 -0.5361 1.4253 13 6 3.9222 0.1878 2.6598 14 6 2.9481 -0.6618 3.4822 15 6 3.5544 -2.0483 3.7107 16 6 3.7775 -2.7378 2.3628 17 1 2.8281 -2.8175 1.8333 18 6 4.3437 -4.1158 2.5904 19 1 5.3072 -4.3784 2.1789 20 6 3.6318 -5.0412 3.3236 21 7 2.4583 -4.7215 3.8240 22 14 4.3332 -6.7494 3.6051 23 1 5.6276 -6.6406 4.3247 24 1 3.3810 -7.5477 4.4183 25 1 4.5489 -7.4178 2.2967 26 6 4.7557 -1.9138 1.5274 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5872 1.3737 -2.1296 33 1 0.8044 2.7252 -1.2541 34 1 3.0270 3.2175 -2.7006 35 1 2.8754 3.9491 -1.0707 36 1 4.9767 2.7742 -0.8896 37 1 4.3891 1.4058 -1.8857 38 1 4.8302 0.3637 3.2364 39 1 3.4573 1.1415 2.4099 40 1 2.7679 -0.1807 4.4434 41 1 2.0065 -0.7610 2.9421 42 1 4.5080 -1.9467 4.2289 43 1 2.8741 -2.6467 4.3165 44 1 1.9572 -5.3727 4.3396 45 1 4.8382 -2.3473 0.5308 46 1 5.7330 -1.9126 2.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:55 Heat of formation + Delta-G solvation = -66.794674 kcal Electronic energy + Delta-G solvation = -23727.955781 eV Core-core repulsion = 20615.962621 eV Total energy + Delta-G solvation = -3111.993160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.42239 -37.77470 -36.41850 -33.50023 -32.95818 -31.33229 -30.50929 -28.94933 -27.48982 -25.09246 -24.55031 -22.72682 -21.67914 -21.18470 -20.42029 -19.05479 -17.85113 -16.85594 -16.21726 -15.79483 -15.32766 -14.74876 -14.46200 -14.13911 -14.12354 -13.50656 -13.27876 -13.08677 -12.80738 -12.69677 -12.40678 -12.09815 -12.03913 -11.73957 -11.41586 -11.15659 -11.00926 -10.95104 -10.86309 -10.76019 -10.70880 -10.57368 -10.41488 -10.25161 -10.17765 -9.92528 -9.77262 -9.41573 -9.13336 -8.79900 -8.37567 -7.83393 -6.01484 -4.08484 3.12321 3.31564 3.35889 3.38805 3.60423 4.42920 4.52695 4.63472 4.71130 5.10503 5.25904 5.27226 5.31695 5.34053 5.47144 5.54755 5.59308 5.63350 5.67360 5.69756 5.80512 5.83512 5.89928 5.92919 6.05886 6.13630 6.15033 6.24037 6.32257 6.35848 6.41925 6.42390 6.50704 6.52320 6.60357 6.72048 6.85073 7.02075 7.19015 7.35052 7.69434 7.93358 8.07316 8.08891 8.38690 8.73756 8.95121 9.56338 11.03903 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.004886 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.102560 B = 5728.842300 C = 5929.858045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.073 4.073 4 H 0.075 0.925 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.115 4.115 9 H 0.088 0.912 10 C 0.522 3.478 11 O -0.552 6.552 12 N -0.604 5.604 13 C 0.107 3.893 14 C -0.135 4.135 15 C -0.112 4.112 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.514 4.514 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.117 3.883 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.095 0.905 44 H 0.261 0.739 45 H 0.077 0.923 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 15.549 -4.383 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.092 4.092 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.151 4.151 8 C -0.136 4.136 9 H 0.106 0.894 10 C 0.310 3.690 11 O -0.431 6.431 12 N -0.336 5.336 13 C -0.016 4.016 14 C -0.173 4.173 15 C -0.150 4.150 16 C 0.022 3.978 17 H 0.047 0.953 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.004 4.004 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.749 15.129 -4.792 15.966 hybrid contribution 0.323 -0.959 0.480 1.120 sum -1.426 14.170 -4.312 14.880 Atomic orbital electron populations 1.21722 0.95858 1.01698 1.01036 1.21916 0.96043 0.95482 1.03894 1.21676 0.92280 0.97075 0.98158 0.90642 1.22441 0.97521 0.98460 0.96990 1.22478 0.94944 0.97889 1.00708 1.22369 0.97361 0.98680 0.96654 1.22100 0.96835 0.94319 1.00357 0.89355 1.20282 0.77220 0.88256 0.83196 1.90628 1.52051 1.65526 1.34870 1.48318 1.64149 1.15844 1.05269 1.21775 0.98932 0.94935 0.85949 1.22019 0.98462 0.98580 0.98224 1.21626 0.99909 0.92352 1.01121 1.18871 0.94569 0.92739 0.91590 0.95332 1.21043 1.04604 0.96430 1.33217 0.92609 1.24918 0.94786 0.98464 0.95537 1.69863 1.12464 1.34802 1.35628 0.86654 0.78791 0.84278 0.78266 1.20281 1.21317 1.20237 1.21878 0.97598 0.79124 1.01792 0.93143 0.92671 0.93056 0.91187 0.90416 0.91249 0.91773 0.91606 0.91732 0.91819 0.89587 0.92157 0.90981 0.92588 0.92241 0.94673 0.88675 0.92957 0.90422 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.77 37.16 0.36 -1.55 16 2 C -0.14 -2.07 4.12 -26.73 -0.11 -2.18 16 3 C -0.07 -0.92 2.89 -89.50 -0.26 -1.18 16 4 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 5 C -0.12 -1.28 5.55 -25.07 -0.14 -1.42 16 6 C -0.12 -1.24 6.91 -24.70 -0.17 -1.41 16 7 C -0.11 -1.40 6.32 -25.03 -0.16 -1.56 16 8 C -0.11 -1.56 2.44 -90.65 -0.22 -1.78 16 9 H 0.09 1.05 6.23 -51.93 -0.32 0.72 16 10 C 0.52 9.36 4.59 -10.99 -0.05 9.31 16 11 O -0.55 -11.81 14.52 5.55 0.08 -11.73 16 12 N -0.60 -11.10 2.34 -173.02 -0.41 -11.51 16 13 C 0.11 1.66 5.93 -3.71 -0.02 1.64 16 14 C -0.13 -2.36 6.00 -26.61 -0.16 -2.52 16 15 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 16 C 0.04 1.01 2.24 -91.87 -0.21 0.81 16 17 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.51 -13.92 8.57 -34.44 -0.29 -14.22 16 19 H 0.06 1.50 7.75 -52.48 -0.41 1.09 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -24.84 11.31 55.43 0.63 -24.21 16 22 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.12 2.55 5.63 -3.93 -0.02 2.52 16 27 H 0.05 0.58 7.52 -51.93 -0.39 0.19 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.23 7.21 -51.93 -0.37 0.85 16 31 H 0.08 1.38 5.11 -51.93 -0.27 1.11 16 32 H 0.07 0.84 7.76 -51.92 -0.40 0.43 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.27 6.85 -51.93 -0.36 0.92 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.92 5.48 -51.93 -0.28 0.63 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.09 6.94 -51.93 -0.36 0.73 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.08 1.83 7.01 -51.93 -0.36 1.46 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -29.05 340.15 -9.32 -38.37 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.05 Total: 2.35 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.68 Total: -14.50 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.22 Total: -35.72 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.05 -9.32 -38.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.424 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds