Wall clock time and date at job start Tue Mar 31 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46928 * 2 1 4 4 H 1.09004 * 110.01923 * 53.32290 * 3 2 1 5 5 C 1.54263 * 110.03279 * 291.88242 * 3 2 1 6 6 C 1.54888 * 104.19676 * 217.10945 * 5 3 2 7 7 C 1.54959 * 102.78060 * 37.91061 * 6 5 3 8 8 C 1.53877 * 110.03243 * 174.71221 * 3 2 1 9 9 H 1.08996 * 110.03757 * 238.61263 * 8 3 2 10 10 C 1.50700 * 110.03150 * 0.02562 * 8 3 2 11 11 O 1.21287 * 119.99652 * 88.56465 * 10 8 3 12 12 N 1.34766 * 119.99969 * 268.83747 * 10 8 3 13 13 C 1.46933 * 120.63316 * 359.72389 * 12 10 8 14 14 C 1.53196 * 108.77531 * 126.36615 * 13 12 10 15 15 C 1.53038 * 109.31127 * 54.63870 * 14 13 12 16 16 C 1.53039 * 109.53801 * 298.63598 * 15 14 13 17 17 H 1.09003 * 109.49627 * 301.41070 * 16 15 14 18 18 C 1.50706 * 109.49485 * 181.34864 * 16 15 14 19 19 H 1.08004 * 119.99568 * 239.99431 * 18 16 15 20 20 C 1.37875 * 120.00288 * 59.99979 * 18 16 15 21 21 N 1.31514 * 119.99597 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00208 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47004 * 59.99879 * 22 20 18 24 24 H 1.48500 * 109.46924 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47024 * 299.99802 * 22 20 18 26 26 C 1.46929 * 120.63408 * 179.44873 * 12 10 8 27 27 H 1.09001 * 109.47035 * 60.00617 * 1 2 3 28 28 H 1.09004 * 109.46757 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47670 * 299.99954 * 1 2 3 30 30 H 1.08994 * 109.47844 * 239.99521 * 2 1 3 31 31 H 1.09001 * 109.47035 * 119.99383 * 2 1 3 32 32 H 1.09008 * 110.48650 * 335.78123 * 5 3 2 33 33 H 1.08992 * 110.48887 * 98.29431 * 5 3 2 34 34 H 1.08996 * 110.75930 * 156.25881 * 6 5 3 35 35 H 1.09002 * 110.75221 * 279.43900 * 6 5 3 36 36 H 1.09004 * 110.53494 * 203.43725 * 7 6 5 37 37 H 1.09003 * 110.47484 * 80.77049 * 7 6 5 38 38 H 1.08996 * 109.58775 * 246.15600 * 13 12 10 39 39 H 1.09004 * 109.57886 * 6.44260 * 13 12 10 40 40 H 1.08991 * 109.49912 * 174.58999 * 14 13 12 41 41 H 1.09003 * 109.49777 * 294.68954 * 14 13 12 42 42 H 1.09005 * 109.45960 * 58.65563 * 15 14 13 43 43 H 1.08994 * 109.46095 * 178.61361 * 15 14 13 44 44 H 0.97006 * 119.99818 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58251 * 353.41325 * 26 12 10 46 46 H 1.08993 * 109.58813 * 113.84308 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5875 1.9982 0.8214 5 6 1.7068 2.1208 -1.3449 6 6 2.9365 3.0173 -1.6330 7 6 4.1187 2.1482 -1.1348 8 6 3.5728 1.4597 0.1332 9 1 3.8644 2.0237 1.0191 10 6 4.0991 0.0503 0.2220 11 8 4.3775 -0.5578 -0.7898 12 7 4.2551 -0.5361 1.4253 13 6 3.9222 0.1878 2.6598 14 6 2.9481 -0.6618 3.4822 15 6 3.5544 -2.0483 3.7107 16 6 3.7775 -2.7378 2.3628 17 1 2.8281 -2.8175 1.8333 18 6 4.3437 -4.1158 2.5904 19 1 5.3072 -4.3784 2.1789 20 6 3.6318 -5.0412 3.3236 21 7 2.4583 -4.7215 3.8240 22 14 4.3332 -6.7494 3.6051 23 1 5.6276 -6.6406 4.3247 24 1 3.3810 -7.5477 4.4183 25 1 4.5489 -7.4178 2.2967 26 6 4.7557 -1.9138 1.5274 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.5872 1.3737 -2.1296 33 1 0.8044 2.7252 -1.2541 34 1 3.0270 3.2175 -2.7006 35 1 2.8754 3.9491 -1.0707 36 1 4.9767 2.7742 -0.8896 37 1 4.3891 1.4058 -1.8857 38 1 4.8302 0.3637 3.2364 39 1 3.4573 1.1415 2.4099 40 1 2.7679 -0.1807 4.4434 41 1 2.0065 -0.7610 2.9421 42 1 4.5080 -1.9467 4.2289 43 1 2.8741 -2.6467 4.3165 44 1 1.9572 -5.3727 4.3396 45 1 4.8382 -2.3473 0.5308 46 1 5.7330 -1.9126 2.0098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597899531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:54 Heat of formation + Delta-G solvation = -81.822298 kcal Electronic energy + Delta-G solvation = -23728.607428 eV Core-core repulsion = 20615.962621 eV Total energy + Delta-G solvation = -3112.644807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74888 -39.10819 -37.90252 -35.37193 -34.03711 -33.06325 -32.15404 -30.14986 -28.46961 -27.02697 -26.08934 -23.88464 -23.28789 -22.53272 -21.40883 -20.62549 -19.29425 -18.40752 -17.94965 -16.97098 -16.69278 -16.55309 -15.84667 -15.41773 -15.34876 -15.01286 -14.77066 -14.60828 -14.20308 -14.05314 -13.88725 -13.63145 -13.29237 -13.01576 -12.87479 -12.71978 -12.63305 -12.40706 -12.23500 -11.93326 -11.86137 -11.83868 -11.71964 -11.60947 -11.47763 -11.42336 -11.30260 -11.15256 -10.85256 -10.53171 -10.40690 -9.43115 -8.11594 -6.26881 1.39652 1.41063 1.48508 1.72625 2.16600 2.43027 3.14665 3.45480 3.66441 3.68490 3.94121 4.12625 4.20565 4.26026 4.33068 4.40556 4.44527 4.50026 4.56894 4.61793 4.65429 4.70472 4.79776 4.81128 4.84841 4.87560 4.87880 4.98654 5.08076 5.12497 5.17323 5.18360 5.24709 5.27549 5.33126 5.39518 5.45138 5.52181 5.56684 5.59716 5.61867 5.93720 6.13818 6.34180 6.63536 6.82325 7.30938 7.41154 8.91693 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026014 B = 0.004886 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.102560 B = 5728.842300 C = 5929.858045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C -0.069 4.069 4 H 0.106 0.894 5 C -0.116 4.116 6 C -0.112 4.112 7 C -0.115 4.115 8 C -0.110 4.110 9 H 0.120 0.880 10 C 0.516 3.484 11 O -0.597 6.597 12 N -0.608 5.608 13 C 0.108 3.892 14 C -0.126 4.126 15 C -0.105 4.105 16 C 0.046 3.954 17 H -0.016 1.016 18 C -0.541 4.541 19 H 0.049 0.951 20 C 0.020 3.980 21 N -0.911 5.911 22 Si 0.953 3.047 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.277 1.277 26 C 0.131 3.869 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.262 0.738 45 H 0.046 0.954 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 18.776 -3.430 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C -0.088 4.088 4 H 0.124 0.876 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.131 4.131 9 H 0.138 0.862 10 C 0.307 3.693 11 O -0.479 6.479 12 N -0.339 5.339 13 C -0.014 4.014 14 C -0.164 4.164 15 C -0.143 4.143 16 C 0.026 3.974 17 H 0.003 0.997 18 C -0.579 4.579 19 H 0.067 0.933 20 C -0.180 4.180 21 N -0.550 5.550 22 Si 0.779 3.221 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.203 1.203 26 C 0.008 3.992 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.981 18.382 -3.826 18.880 hybrid contribution 0.382 -2.035 0.138 2.075 sum -1.599 16.347 -3.688 16.834 Atomic orbital electron populations 1.21687 0.94185 1.01068 1.02854 1.21822 0.97552 0.97119 1.00573 1.21754 0.91403 0.95227 1.00392 0.87561 1.22447 0.99266 0.98361 0.95249 1.22470 0.92751 0.98094 1.01648 1.22389 0.99243 0.98442 0.95240 1.22238 0.97434 0.90992 1.02389 0.86198 1.21210 0.76045 0.89940 0.82112 1.90607 1.53763 1.67104 1.36431 1.48379 1.64065 1.14480 1.06953 1.22011 0.99498 0.95517 0.84362 1.21911 0.98049 0.96177 1.00253 1.21412 0.99396 0.94747 0.98743 1.18741 0.92829 0.92854 0.92931 0.99745 1.21415 1.04683 0.98298 1.33546 0.93260 1.25653 0.95100 1.01994 0.95227 1.70000 1.13325 1.35832 1.35864 0.85692 0.78501 0.79858 0.78092 1.19279 1.20607 1.20292 1.21401 0.97155 0.81254 0.99397 0.91193 0.94647 0.91198 0.95005 0.93346 0.93340 0.89129 0.90858 0.88924 0.89940 0.93007 0.90240 0.86882 0.89271 0.93475 0.94614 0.91960 0.92923 0.93501 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.77 71.98 0.70 -2.88 16 2 C -0.13 -4.08 4.12 30.59 0.13 -3.95 16 3 C -0.07 -1.54 2.89 -10.07 -0.03 -1.57 16 4 H 0.11 1.80 8.14 -2.38 -0.02 1.79 16 5 C -0.12 -2.19 5.55 31.67 0.18 -2.01 16 6 C -0.11 -1.84 6.91 31.91 0.22 -1.62 16 7 C -0.12 -2.60 6.32 31.70 0.20 -2.40 16 8 C -0.11 -2.69 2.44 -10.81 -0.03 -2.72 16 9 H 0.12 2.21 6.23 -2.39 -0.01 2.19 16 10 C 0.52 18.62 4.59 87.66 0.40 19.02 16 11 O -0.60 -27.01 14.52 -3.05 -0.04 -27.05 16 12 N -0.61 -22.36 2.34 -819.72 -1.92 -24.28 16 13 C 0.11 3.04 5.93 86.36 0.51 3.55 16 14 C -0.13 -4.24 6.00 30.67 0.18 -4.05 16 15 C -0.10 -4.75 4.96 30.62 0.15 -4.60 16 16 C 0.05 2.35 2.24 -11.60 -0.03 2.32 16 17 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 18 C -0.54 -30.62 8.57 25.60 0.22 -30.40 16 19 H 0.05 2.77 7.75 -2.91 -0.02 2.75 16 20 C 0.02 1.10 5.30 84.65 0.45 1.55 16 21 N -0.91 -52.60 11.31 21.45 0.24 -52.36 16 22 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 C 0.13 5.96 5.63 86.22 0.49 6.45 16 27 H 0.07 1.49 7.52 -2.39 -0.02 1.47 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 1.19 7.21 -2.39 -0.02 1.17 16 31 H 0.05 1.76 5.11 -2.39 -0.01 1.75 16 32 H 0.05 1.12 7.76 -2.38 -0.02 1.10 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.05 1.54 6.85 -2.39 -0.02 1.52 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.11 2.31 5.48 -2.38 -0.01 2.29 16 40 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.05 1.71 6.94 -2.39 -0.02 1.69 16 42 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.06 3.24 6.04 -2.39 -0.01 3.23 16 44 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 45 H 0.05 2.38 7.01 -2.39 -0.02 2.37 16 46 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -69.19 340.15 4.99 -64.21 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.94 Total: 16.55 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 3.75 Total: -23.31 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.68 Total: -76.64 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.04 Total: -27.05 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.19 4.99 -64.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.617 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds