Wall clock time and date at job start Tue Mar 31 2020 02:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47118 * 2 1 4 4 H 1.09001 * 110.53948 * 52.38357 * 3 2 1 5 5 C 1.54264 * 110.48432 * 289.77021 * 3 2 1 6 6 C 1.53873 * 106.59975 * 217.71400 * 5 3 2 7 7 C 1.54264 * 106.59928 * 359.97438 * 6 5 3 8 8 C 1.54889 * 110.48364 * 174.99873 * 3 2 1 9 9 H 1.08996 * 110.75618 * 38.11909 * 8 3 2 10 10 C 1.50703 * 110.75555 * 274.92960 * 8 3 2 11 11 O 1.21279 * 119.99801 * 348.31003 * 10 8 3 12 12 N 1.34781 * 119.99663 * 168.30516 * 10 8 3 13 13 C 1.46923 * 120.62505 * 175.53834 * 12 10 8 14 14 C 1.53190 * 108.77600 * 126.41719 * 13 12 10 15 15 C 1.53039 * 109.34207 * 54.61226 * 14 13 12 16 16 C 1.53037 * 109.53772 * 298.68879 * 15 14 13 17 17 H 1.09006 * 109.49519 * 301.34072 * 16 15 14 18 18 C 1.50699 * 109.49490 * 181.28635 * 16 15 14 19 19 H 1.08004 * 119.99674 * 245.61755 * 18 16 15 20 20 C 1.37883 * 120.00485 * 65.61351 * 18 16 15 21 21 N 1.31512 * 120.00298 * 198.41570 * 20 18 16 22 22 Si 1.86800 * 119.99740 * 18.13827 * 20 18 16 23 23 H 1.48501 * 109.47103 * 180.27468 * 22 20 18 24 24 H 1.48496 * 109.47106 * 300.27836 * 22 20 18 25 25 H 1.48503 * 109.47053 * 60.27699 * 22 20 18 26 26 C 1.46926 * 120.63287 * 355.55934 * 12 10 8 27 27 H 1.09001 * 109.46749 * 60.00007 * 1 2 3 28 28 H 1.08998 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47171 * 300.00387 * 1 2 3 30 30 H 1.08996 * 109.46811 * 239.99669 * 2 1 3 31 31 H 1.09001 * 109.46749 * 119.99993 * 2 1 3 32 32 H 1.08997 * 110.03838 * 337.00199 * 5 3 2 33 33 H 1.08999 * 110.03154 * 98.43185 * 5 3 2 34 34 H 1.08997 * 110.03381 * 119.28693 * 6 5 3 35 35 H 1.09008 * 110.03346 * 240.71882 * 6 5 3 36 36 H 1.08997 * 110.48801 * 264.93254 * 7 6 5 37 37 H 1.09001 * 110.48701 * 142.28294 * 7 6 5 38 38 H 1.09011 * 109.58392 * 246.20106 * 13 12 10 39 39 H 1.09003 * 109.59116 * 6.47955 * 13 12 10 40 40 H 1.09000 * 109.50067 * 174.58477 * 14 13 12 41 41 H 1.09002 * 109.49308 * 294.64168 * 14 13 12 42 42 H 1.09001 * 109.48128 * 178.64663 * 15 14 13 43 43 H 1.09003 * 109.42747 * 58.69010 * 15 14 13 44 44 H 0.97003 * 119.99381 * 354.62923 * 21 20 18 45 45 H 1.08995 * 109.58822 * 113.79606 * 26 12 10 46 46 H 1.09002 * 109.70143 * 353.43964 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0107 0.8085 5 6 1.7592 2.1144 -1.3599 6 6 2.9739 3.0071 -1.6684 7 6 3.9503 2.8471 -0.4849 8 6 3.5835 1.4717 0.1265 9 1 4.0333 0.6593 -0.4443 10 6 4.0023 1.4015 1.5725 11 8 3.1781 1.5468 2.4502 12 7 5.2928 1.1772 1.8901 13 6 5.7340 1.2029 3.2913 14 6 6.4662 -0.1065 3.6017 15 6 7.5970 -0.3070 2.5902 16 6 7.0109 -0.4032 1.1798 17 1 6.3061 -1.2335 1.1345 18 6 8.1221 -0.6322 0.1879 19 1 8.3518 0.1227 -0.5495 20 6 8.8456 -1.8055 0.2218 21 7 10.0176 -1.8727 -0.3710 22 14 8.1646 -3.2971 1.1166 23 1 9.1301 -4.4206 1.0119 24 1 7.9494 -2.9609 2.5469 25 1 6.8728 -3.6958 0.5021 26 6 6.2850 0.9028 0.8418 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6466 1.3562 -2.1349 33 1 0.8561 2.7214 -1.2970 34 1 3.4509 2.6822 -2.5930 35 1 2.6603 4.0475 -1.7551 36 1 3.7987 3.6423 0.2450 37 1 4.9813 2.8440 -0.8386 38 1 6.4091 2.0446 3.4464 39 1 4.8680 1.3037 3.9454 40 1 6.8822 -0.0609 4.6082 41 1 5.7662 -0.9393 3.5349 42 1 8.1347 -1.2260 2.8235 43 1 8.2834 0.5382 2.6414 44 1 10.3384 -1.1238 -0.8975 45 1 7.0049 1.7200 0.7972 46 1 5.7843 0.8039 -0.1213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:59 Heat of formation + Delta-G solvation = -73.934693 kcal Electronic energy + Delta-G solvation = -23354.737167 eV Core-core repulsion = 20242.434392 eV Total energy + Delta-G solvation = -3112.302774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.24709 -38.05527 -36.64287 -33.45135 -33.13598 -32.01481 -30.59283 -29.04687 -27.57888 -24.93987 -24.80291 -22.88815 -21.80709 -20.86267 -19.80869 -19.48078 -18.40235 -17.59114 -16.85195 -15.81243 -15.31057 -14.76471 -14.49626 -14.22725 -14.05703 -13.50605 -13.47082 -13.27262 -13.02216 -12.82610 -12.70908 -12.30788 -12.17787 -11.96964 -11.80327 -11.46317 -11.24957 -11.16276 -10.89336 -10.72462 -10.58995 -10.46260 -10.41383 -10.38915 -10.24782 -10.11501 -9.79092 -9.59350 -9.28066 -8.88225 -8.28901 -8.07613 -6.52724 -4.15031 2.97013 3.34333 3.39459 3.44517 3.56734 4.43085 4.47746 4.61162 4.69578 5.07862 5.13425 5.18199 5.24069 5.36556 5.40192 5.49328 5.53522 5.55580 5.59698 5.63692 5.67644 5.72310 5.86243 5.86806 5.90752 5.97725 6.00166 6.04534 6.10900 6.14149 6.19507 6.26235 6.27472 6.35635 6.38841 6.49183 6.53797 6.72661 6.79572 6.99880 7.16636 7.40168 7.84862 8.04218 8.29427 8.56462 8.81831 9.53417 10.87142 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.005349 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.003368 B = 5233.048328 C = 5443.135050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.073 4.073 4 H 0.088 0.912 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.113 4.113 9 H 0.103 0.897 10 C 0.522 3.478 11 O -0.559 6.559 12 N -0.607 5.607 13 C 0.115 3.885 14 C -0.137 4.137 15 C -0.122 4.122 16 C 0.011 3.989 17 H 0.023 0.977 18 C -0.602 4.602 19 H 0.057 0.943 20 C 0.035 3.965 21 N -0.904 5.904 22 Si 1.043 2.957 23 H -0.286 1.286 24 H -0.273 1.273 25 H -0.284 1.284 26 C 0.122 3.878 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.268 0.732 45 H 0.060 0.940 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.974 7.032 0.452 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.092 4.092 4 H 0.106 0.894 5 C -0.157 4.157 6 C -0.160 4.160 7 C -0.148 4.148 8 C -0.135 4.135 9 H 0.121 0.879 10 C 0.310 3.690 11 O -0.439 6.439 12 N -0.338 5.338 13 C -0.008 4.008 14 C -0.176 4.176 15 C -0.160 4.160 16 C -0.008 4.008 17 H 0.041 0.959 18 C -0.640 4.640 19 H 0.075 0.925 20 C -0.171 4.171 21 N -0.537 5.537 22 Si 0.872 3.128 23 H -0.212 1.212 24 H -0.200 1.200 25 H -0.210 1.210 26 C 0.000 4.000 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.017 5.561 1.347 15.140 hybrid contribution -0.085 1.521 -0.509 1.606 sum -14.101 7.082 0.838 15.802 Atomic orbital electron populations 1.21741 0.95941 1.01246 1.01592 1.21551 0.95819 0.96030 1.02067 1.21893 0.92920 0.96608 0.97746 0.89399 1.22227 0.97854 0.98625 0.96959 1.22111 0.95880 0.99780 0.98207 1.22283 0.99877 0.95273 0.97338 1.22383 0.97548 1.00038 0.93487 0.87940 1.20451 0.81753 0.75755 0.91015 1.90604 1.51098 1.51768 1.50396 1.48354 1.08336 1.68904 1.08240 1.21517 0.98946 0.97803 0.82511 1.22002 0.99015 0.96982 0.99561 1.22053 0.96306 1.01911 0.95760 1.19305 0.95474 0.92452 0.93616 0.95868 1.21849 1.18844 1.05163 1.18138 0.92490 1.25709 0.93204 1.00539 0.97606 1.70869 1.15271 1.36404 1.31182 0.84052 0.75849 0.76118 0.76755 1.21223 1.19967 1.21031 1.21961 0.89714 0.99245 0.89080 0.92888 0.93065 0.92791 0.92013 0.91861 0.91603 0.91911 0.91524 0.91837 0.91424 0.90766 0.92159 0.89969 0.91997 0.92365 0.91823 0.92758 0.92183 0.92149 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.79 37.16 0.36 -1.20 16 2 C -0.12 -1.47 5.32 -26.73 -0.14 -1.61 16 3 C -0.07 -0.94 2.05 -88.96 -0.18 -1.12 16 4 H 0.09 1.27 7.28 -51.93 -0.38 0.89 16 5 C -0.12 -1.25 5.69 -25.61 -0.15 -1.40 16 6 C -0.12 -1.28 6.80 -25.61 -0.17 -1.45 16 7 C -0.11 -1.37 6.05 -25.06 -0.15 -1.52 16 8 C -0.11 -1.63 1.68 -89.76 -0.15 -1.78 16 9 H 0.10 1.51 6.62 -51.93 -0.34 1.17 16 10 C 0.52 9.08 6.96 -10.98 -0.08 9.00 16 11 O -0.56 -10.98 15.11 5.56 0.08 -10.89 16 12 N -0.61 -10.76 2.97 -172.77 -0.51 -11.28 16 13 C 0.11 1.93 6.44 -3.71 -0.02 1.90 16 14 C -0.14 -2.39 6.08 -26.61 -0.16 -2.55 16 15 C -0.12 -2.53 4.86 -26.69 -0.13 -2.66 16 16 C 0.01 0.25 1.83 -91.66 -0.17 0.08 16 17 H 0.02 0.54 6.79 -51.93 -0.35 0.19 16 18 C -0.60 -15.78 8.82 -34.44 -0.30 -16.09 16 19 H 0.06 1.59 7.99 -52.48 -0.42 1.17 16 20 C 0.04 0.97 5.32 -17.82 -0.09 0.87 16 21 N -0.90 -26.73 13.70 55.43 0.76 -25.97 16 22 Si 1.04 24.55 26.37 -169.99 -4.48 20.06 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -5.97 5.66 56.52 0.32 -5.65 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.12 2.29 5.34 -3.71 -0.02 2.27 16 27 H 0.05 0.50 7.62 -51.93 -0.40 0.10 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.74 7.95 -51.93 -0.41 0.32 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.65 7.71 -51.93 -0.40 0.25 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 37 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 38 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 39 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.40 4.87 -51.93 -0.25 1.15 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.27 7.87 8.73 -40.82 -0.36 7.52 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.36 5.29 -51.93 -0.27 1.09 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -29.20 344.31 -8.82 -38.03 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.30 Total: 2.12 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -1.56 Total: -17.26 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.25 Total: -37.25 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.48 Total: 20.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.20 -8.82 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.908 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds