Wall clock time and date at job start Tue Mar 31 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47118 * 2 1 4 4 H 1.09001 * 110.53948 * 52.38357 * 3 2 1 5 5 C 1.54264 * 110.48432 * 289.77021 * 3 2 1 6 6 C 1.53873 * 106.59975 * 217.71400 * 5 3 2 7 7 C 1.54264 * 106.59928 * 359.97438 * 6 5 3 8 8 C 1.54889 * 110.48364 * 174.99873 * 3 2 1 9 9 H 1.08996 * 110.75618 * 38.11909 * 8 3 2 10 10 C 1.50703 * 110.75555 * 274.92960 * 8 3 2 11 11 O 1.21279 * 119.99801 * 348.31003 * 10 8 3 12 12 N 1.34781 * 119.99663 * 168.30516 * 10 8 3 13 13 C 1.46923 * 120.62505 * 175.53834 * 12 10 8 14 14 C 1.53190 * 108.77600 * 126.41719 * 13 12 10 15 15 C 1.53039 * 109.34207 * 54.61226 * 14 13 12 16 16 C 1.53037 * 109.53772 * 298.68879 * 15 14 13 17 17 H 1.09006 * 109.49519 * 301.34072 * 16 15 14 18 18 C 1.50699 * 109.49490 * 181.28635 * 16 15 14 19 19 H 1.08004 * 119.99674 * 245.61755 * 18 16 15 20 20 C 1.37883 * 120.00485 * 65.61351 * 18 16 15 21 21 N 1.31512 * 120.00298 * 198.41570 * 20 18 16 22 22 Si 1.86800 * 119.99740 * 18.13827 * 20 18 16 23 23 H 1.48501 * 109.47103 * 180.27468 * 22 20 18 24 24 H 1.48496 * 109.47106 * 300.27836 * 22 20 18 25 25 H 1.48503 * 109.47053 * 60.27699 * 22 20 18 26 26 C 1.46926 * 120.63287 * 355.55934 * 12 10 8 27 27 H 1.09001 * 109.46749 * 60.00007 * 1 2 3 28 28 H 1.08998 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47171 * 300.00387 * 1 2 3 30 30 H 1.08996 * 109.46811 * 239.99669 * 2 1 3 31 31 H 1.09001 * 109.46749 * 119.99993 * 2 1 3 32 32 H 1.08997 * 110.03838 * 337.00199 * 5 3 2 33 33 H 1.08999 * 110.03154 * 98.43185 * 5 3 2 34 34 H 1.08997 * 110.03381 * 119.28693 * 6 5 3 35 35 H 1.09008 * 110.03346 * 240.71882 * 6 5 3 36 36 H 1.08997 * 110.48801 * 264.93254 * 7 6 5 37 37 H 1.09001 * 110.48701 * 142.28294 * 7 6 5 38 38 H 1.09011 * 109.58392 * 246.20106 * 13 12 10 39 39 H 1.09003 * 109.59116 * 6.47955 * 13 12 10 40 40 H 1.09000 * 109.50067 * 174.58477 * 14 13 12 41 41 H 1.09002 * 109.49308 * 294.64168 * 14 13 12 42 42 H 1.09001 * 109.48128 * 178.64663 * 15 14 13 43 43 H 1.09003 * 109.42747 * 58.69010 * 15 14 13 44 44 H 0.97003 * 119.99381 * 354.62923 * 21 20 18 45 45 H 1.08995 * 109.58822 * 113.79606 * 26 12 10 46 46 H 1.09002 * 109.70143 * 353.43964 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0107 0.8085 5 6 1.7592 2.1144 -1.3599 6 6 2.9739 3.0071 -1.6684 7 6 3.9503 2.8471 -0.4849 8 6 3.5835 1.4717 0.1265 9 1 4.0333 0.6593 -0.4443 10 6 4.0023 1.4015 1.5725 11 8 3.1781 1.5468 2.4502 12 7 5.2928 1.1772 1.8901 13 6 5.7340 1.2029 3.2913 14 6 6.4662 -0.1065 3.6017 15 6 7.5970 -0.3070 2.5902 16 6 7.0109 -0.4032 1.1798 17 1 6.3061 -1.2335 1.1345 18 6 8.1221 -0.6322 0.1879 19 1 8.3518 0.1227 -0.5495 20 6 8.8456 -1.8055 0.2218 21 7 10.0176 -1.8727 -0.3710 22 14 8.1646 -3.2971 1.1166 23 1 9.1301 -4.4206 1.0119 24 1 7.9494 -2.9609 2.5469 25 1 6.8728 -3.6958 0.5021 26 6 6.2850 0.9028 0.8418 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6466 1.3562 -2.1349 33 1 0.8561 2.7214 -1.2970 34 1 3.4509 2.6822 -2.5930 35 1 2.6603 4.0475 -1.7551 36 1 3.7987 3.6423 0.2450 37 1 4.9813 2.8440 -0.8386 38 1 6.4091 2.0446 3.4464 39 1 4.8680 1.3037 3.9454 40 1 6.8822 -0.0609 4.6082 41 1 5.7662 -0.9393 3.5349 42 1 8.1347 -1.2260 2.8235 43 1 8.2834 0.5382 2.6414 44 1 10.3384 -1.1238 -0.8975 45 1 7.0049 1.7200 0.7972 46 1 5.7843 0.8039 -0.1213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597899532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:58 Heat of formation + Delta-G solvation = -89.094753 kcal Electronic energy + Delta-G solvation = -23355.394556 eV Core-core repulsion = 20242.434392 eV Total energy + Delta-G solvation = -3112.960164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56679 -39.29879 -38.07409 -35.25335 -34.23921 -33.51196 -32.29749 -30.15901 -28.49449 -26.68263 -26.37484 -23.97780 -23.09563 -22.29062 -21.17538 -20.59872 -19.89300 -19.47612 -18.21958 -17.17846 -16.43795 -16.14721 -15.90069 -15.60991 -15.27616 -15.12315 -14.78427 -14.53526 -14.42052 -14.11566 -13.93061 -13.87222 -13.65742 -13.23720 -12.91061 -12.75957 -12.66409 -12.34967 -12.18277 -12.12468 -11.92853 -11.88960 -11.62199 -11.50089 -11.46742 -11.34472 -11.30420 -11.21997 -10.89652 -10.61643 -10.36625 -9.59396 -8.70763 -6.33623 1.45861 1.50763 1.59874 1.70141 2.07440 2.47478 3.07724 3.40823 3.58640 3.66127 3.91588 4.06828 4.08854 4.18334 4.24027 4.29869 4.32136 4.42109 4.46395 4.48887 4.56281 4.65233 4.69540 4.70337 4.77021 4.79141 4.85708 4.92862 4.97732 5.02745 5.11620 5.12244 5.16067 5.18890 5.23164 5.27300 5.39142 5.42394 5.43905 5.54013 5.57900 5.64785 6.03260 6.09609 6.44583 6.63258 7.16960 7.41976 8.67801 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.005349 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.003368 B = 5233.048328 C = 5443.135050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.070 4.070 4 H 0.070 0.930 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.108 4.108 8 C -0.116 4.116 9 H 0.099 0.901 10 C 0.519 3.481 11 O -0.582 6.582 12 N -0.610 5.610 13 C 0.112 3.888 14 C -0.128 4.128 15 C -0.120 4.120 16 C 0.008 3.992 17 H 0.018 0.982 18 C -0.595 4.595 19 H 0.029 0.971 20 C -0.012 4.012 21 N -0.939 5.939 22 Si 1.075 2.925 23 H -0.292 1.292 24 H -0.246 1.246 25 H -0.270 1.270 26 C 0.134 3.866 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.255 0.745 45 H 0.059 0.941 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 7.476 0.747 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.089 4.089 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.146 4.146 8 C -0.137 4.137 9 H 0.117 0.883 10 C 0.309 3.691 11 O -0.463 6.463 12 N -0.341 5.341 13 C -0.010 4.010 14 C -0.166 4.166 15 C -0.158 4.158 16 C -0.012 4.012 17 H 0.037 0.963 18 C -0.634 4.634 19 H 0.047 0.953 20 C -0.211 4.211 21 N -0.575 5.575 22 Si 0.898 3.102 23 H -0.219 1.219 24 H -0.170 1.170 25 H -0.195 1.195 26 C 0.012 3.988 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.965 6.030 1.649 17.146 hybrid contribution 0.525 1.447 -0.612 1.657 sum -15.440 7.478 1.037 17.187 Atomic orbital electron populations 1.21707 0.94332 1.01927 1.02113 1.21551 0.97280 0.95626 1.01057 1.21864 0.91498 0.96803 0.98719 0.91124 1.22209 0.98486 0.98887 0.95480 1.22114 0.95226 1.00819 0.97379 1.22293 1.00478 0.93822 0.97998 1.22464 0.98820 1.01014 0.91422 0.88328 1.20966 0.81195 0.74795 0.92108 1.90590 1.51507 1.52791 1.51443 1.48383 1.08343 1.68970 1.08393 1.21615 0.99274 0.98055 0.82053 1.21923 0.97629 0.97061 1.00012 1.21922 0.97231 1.01102 0.95549 1.19277 0.94312 0.93984 0.93605 0.96346 1.22067 1.19420 1.03983 1.17900 0.95254 1.26899 0.92885 1.03325 0.98014 1.70987 1.17075 1.36171 1.33278 0.83662 0.75667 0.73189 0.77669 1.21882 1.17042 1.19525 1.21685 0.89827 0.97449 0.89838 0.91213 0.92355 0.93386 0.91346 0.94503 0.90588 0.90441 0.90725 0.90293 0.91919 0.90959 0.90709 0.89720 0.89126 0.92867 0.93181 0.93113 0.93611 0.92273 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.79 71.98 0.70 -2.07 16 2 C -0.12 -2.81 5.32 30.60 0.16 -2.64 16 3 C -0.07 -1.70 2.05 -9.72 -0.02 -1.72 16 4 H 0.07 1.98 7.28 -2.39 -0.02 1.96 16 5 C -0.11 -2.06 5.69 31.32 0.18 -1.89 16 6 C -0.12 -2.15 6.80 31.32 0.21 -1.93 16 7 C -0.11 -2.53 6.05 31.68 0.19 -2.33 16 8 C -0.12 -3.21 1.68 -10.24 -0.02 -3.22 16 9 H 0.10 2.81 6.62 -2.39 -0.02 2.79 16 10 C 0.52 17.59 6.96 87.66 0.61 18.20 16 11 O -0.58 -22.45 15.11 -3.03 -0.05 -22.50 16 12 N -0.61 -20.85 2.97 -818.91 -2.43 -23.29 16 13 C 0.11 3.55 6.44 86.36 0.56 4.10 16 14 C -0.13 -4.15 6.08 30.67 0.19 -3.97 16 15 C -0.12 -4.78 4.86 30.62 0.15 -4.64 16 16 C 0.01 0.35 1.83 -11.47 -0.02 0.33 16 17 H 0.02 0.83 6.79 -2.38 -0.02 0.81 16 18 C -0.60 -31.54 8.82 25.60 0.23 -31.32 16 19 H 0.03 1.68 7.99 -2.91 -0.02 1.65 16 20 C -0.01 -0.68 5.32 84.66 0.45 -0.23 16 21 N -0.94 -56.89 13.70 21.45 0.29 -56.60 16 22 Si 1.08 48.95 26.37 68.60 1.81 50.75 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.25 -10.04 5.66 99.48 0.56 -9.48 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 26 C 0.13 4.94 5.34 86.36 0.46 5.40 16 27 H 0.07 1.11 7.62 -2.39 -0.02 1.10 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.52 7.95 -2.39 -0.02 1.50 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.26 7.71 -2.39 -0.02 1.24 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.06 1.52 8.04 -2.39 -0.02 1.50 16 37 H 0.07 1.70 7.79 -2.39 -0.02 1.69 16 38 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.08 2.68 7.00 -2.39 -0.02 2.66 16 40 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 2.12 4.87 -2.39 -0.01 2.11 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.25 15.55 8.73 -92.71 -0.81 14.74 16 45 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 46 H 0.08 2.96 5.29 -2.39 -0.01 2.95 16 Total: -1.00 -63.32 344.31 4.40 -58.91 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.75 Total: 20.64 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 4.03 Total: -27.92 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.14 Total: -79.88 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.81 Total: 50.75 kcal Total: -63.32 4.40 -58.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.181 kcal (2) G-P(sol) polarization free energy of solvation -63.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds