Wall clock time and date at job start Tue Mar 31 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47065 * 2 1 4 4 H 1.09004 * 110.05929 * 53.92329 * 3 2 1 5 5 C 1.54259 * 110.03631 * 292.50285 * 3 2 1 6 6 C 1.54891 * 104.19813 * 217.10663 * 5 3 2 7 7 C 1.54889 * 102.74977 * 37.94181 * 6 5 3 8 8 C 1.53877 * 110.03345 * 175.33533 * 3 2 1 9 9 H 1.08998 * 110.07461 * 238.59874 * 8 3 2 10 10 C 1.50701 * 110.03100 * 0.02562 * 8 3 2 11 11 O 1.21278 * 120.00244 * 94.58861 * 10 8 3 12 12 N 1.34775 * 120.00369 * 274.59175 * 10 8 3 13 13 C 1.46932 * 120.62696 * 354.97348 * 12 10 8 14 14 C 1.53198 * 108.77312 * 233.60959 * 13 12 10 15 15 C 1.53040 * 109.31273 * 305.36368 * 14 13 12 16 16 C 1.53040 * 109.53888 * 61.36574 * 15 14 13 17 17 H 1.09002 * 109.49886 * 58.61760 * 16 15 14 18 18 C 1.50692 * 109.49883 * 178.68373 * 16 15 14 19 19 H 1.08004 * 120.00645 * 115.90619 * 18 16 15 20 20 C 1.37884 * 120.00090 * 295.90585 * 18 16 15 21 21 N 1.31514 * 119.99567 * 353.54227 * 20 18 16 22 22 Si 1.86801 * 119.99990 * 173.54218 * 20 18 16 23 23 H 1.48511 * 109.46922 * 265.03072 * 22 20 18 24 24 H 1.48499 * 109.47193 * 145.03771 * 22 20 18 25 25 H 1.48500 * 109.47237 * 25.03040 * 22 20 18 26 26 C 1.46927 * 120.63511 * 174.97147 * 12 10 8 27 27 H 1.08997 * 109.46909 * 59.99929 * 1 2 3 28 28 H 1.09003 * 109.46945 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47258 * 300.00062 * 1 2 3 30 30 H 1.09001 * 109.47258 * 239.99937 * 2 1 3 31 31 H 1.08998 * 109.46931 * 120.00627 * 2 1 3 32 32 H 1.09003 * 110.48571 * 98.42744 * 5 3 2 33 33 H 1.09000 * 110.60051 * 335.84436 * 5 3 2 34 34 H 1.09005 * 110.75476 * 279.62937 * 6 5 3 35 35 H 1.08998 * 110.91457 * 156.33437 * 6 5 3 36 36 H 1.08999 * 110.48683 * 203.38198 * 7 6 5 37 37 H 1.09000 * 110.59594 * 80.79101 * 7 6 5 38 38 H 1.09002 * 109.58977 * 113.82250 * 13 12 10 39 39 H 1.08999 * 109.70438 * 353.46043 * 13 12 10 40 40 H 1.09005 * 109.49453 * 185.41435 * 14 13 12 41 41 H 1.09002 * 109.52579 * 65.33397 * 14 13 12 42 42 H 1.09001 * 109.45971 * 301.34378 * 15 14 13 43 43 H 1.08993 * 109.44919 * 181.38024 * 15 14 13 44 44 H 0.97000 * 119.99302 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.58468 * 6.60740 * 26 12 10 46 46 H 1.08994 * 109.59107 * 246.17645 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5962 1.9959 0.8276 5 6 1.6932 2.1256 -1.3389 6 6 2.9200 3.0233 -1.6363 7 6 4.1062 2.1518 -1.1541 8 6 3.5742 1.4591 0.1176 9 1 3.8755 2.0201 1.0022 10 6 4.1013 0.0495 0.1958 11 8 4.4721 -0.5161 -0.8109 12 7 4.1606 -0.5828 1.3845 13 6 3.8192 0.1243 2.6264 14 6 4.9811 -0.0243 3.6138 15 6 5.2977 -1.5096 3.8029 16 6 5.7212 -2.1173 2.4637 17 1 6.5931 -1.5858 2.0824 18 6 6.0638 -3.5719 2.6572 19 1 5.4742 -4.3350 2.1709 20 6 7.1300 -3.9288 3.4553 21 7 7.9244 -3.0019 3.9445 22 14 7.4461 -5.7289 3.8416 23 1 6.8142 -6.0749 5.1403 24 1 8.9094 -5.9679 3.9241 25 1 6.8660 -6.5749 2.7679 26 6 4.5677 -1.9924 1.4633 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.7930 2.7316 -1.2360 33 1 1.5641 1.3830 -2.1262 34 1 2.8663 3.9516 -1.0674 35 1 3.0012 3.2301 -2.7034 36 1 4.9669 2.7769 -0.9163 37 1 4.3703 1.4118 -1.9095 38 1 2.9162 -0.3084 3.0570 39 1 3.6530 1.1805 2.4142 40 1 4.7021 0.4132 4.5724 41 1 5.8599 0.4880 3.2220 42 1 4.4114 -2.0257 4.1718 43 1 6.1080 -1.6190 4.5237 44 1 8.6747 -3.2530 4.5056 45 1 4.8969 -2.3330 0.4816 46 1 3.7258 -2.5977 1.7990 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597899533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:02 Heat of formation + Delta-G solvation = -66.895310 kcal Electronic energy + Delta-G solvation = -23446.533190 eV Core-core repulsion = 20334.535666 eV Total energy + Delta-G solvation = -3111.997524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.43620 -37.82508 -36.42129 -33.52612 -33.06470 -31.38186 -30.49423 -28.97305 -27.58187 -25.07228 -24.59088 -22.86353 -21.72899 -21.13663 -20.47107 -19.20485 -17.77020 -16.83228 -16.30303 -15.86799 -15.37266 -14.82749 -14.53053 -14.25259 -14.03315 -13.56827 -13.31231 -13.22516 -12.84322 -12.66054 -12.45904 -12.17354 -12.03010 -11.87560 -11.48240 -11.27968 -11.04462 -10.99584 -10.86835 -10.77137 -10.71221 -10.63497 -10.50344 -10.39462 -10.21009 -10.00052 -9.71528 -9.46656 -9.15180 -8.80571 -8.36563 -7.84232 -6.03407 -4.07112 3.11968 3.29760 3.37189 3.40542 3.59272 4.43612 4.48141 4.57048 4.65164 5.03168 5.18280 5.21879 5.24579 5.29743 5.32398 5.53006 5.54527 5.57216 5.61090 5.64727 5.70034 5.80749 5.82006 5.87111 5.99291 6.03930 6.10512 6.14181 6.20688 6.29765 6.32584 6.40422 6.42652 6.44288 6.48799 6.66706 6.81123 7.00669 7.15675 7.29219 7.69351 7.91530 8.00470 8.07112 8.37829 8.73174 8.97101 9.56957 11.04978 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.004422 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.632211 B = 6330.663941 C = 6450.504983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.073 4.073 4 H 0.076 0.924 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.114 4.114 8 C -0.115 4.115 9 H 0.091 0.909 10 C 0.522 3.478 11 O -0.551 6.551 12 N -0.604 5.604 13 C 0.109 3.891 14 C -0.136 4.136 15 C -0.106 4.106 16 C 0.039 3.961 17 H 0.034 0.966 18 C -0.515 4.515 19 H 0.057 0.943 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.118 3.882 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.260 0.740 45 H 0.078 0.922 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.749 12.196 -4.754 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.092 4.092 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.152 4.152 8 C -0.137 4.137 9 H 0.109 0.891 10 C 0.310 3.690 11 O -0.429 6.429 12 N -0.336 5.336 13 C -0.014 4.014 14 C -0.174 4.174 15 C -0.144 4.144 16 C 0.020 3.980 17 H 0.052 0.948 18 C -0.554 4.554 19 H 0.075 0.925 20 C -0.137 4.137 21 N -0.526 5.526 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.003 4.003 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.389 11.894 -5.164 17.934 hybrid contribution 0.307 -0.953 0.581 1.158 sum -12.082 10.941 -4.583 16.931 Atomic orbital electron populations 1.21745 0.95856 1.01450 1.01368 1.21879 0.95890 0.95912 1.03445 1.21669 0.92517 0.96711 0.98339 0.90581 1.22432 0.97627 0.98462 0.96860 1.22475 0.94879 0.97907 1.00804 1.22362 0.97396 0.98712 0.96721 1.22100 0.96485 0.94467 1.00614 0.89100 1.20260 0.77535 0.87978 0.83183 1.90630 1.49357 1.67941 1.34993 1.48311 1.66180 1.13432 1.05667 1.21747 0.98144 0.96124 0.85382 1.22003 0.97367 1.00731 0.97281 1.21553 1.00493 0.90586 1.01802 1.18966 0.92293 0.96465 0.90266 0.94801 1.21070 1.13569 0.91458 1.29292 0.92520 1.24934 0.95484 0.97244 0.96029 1.69953 1.16004 1.32451 1.34206 0.86609 0.77368 0.85512 0.78713 1.20734 1.21281 1.19818 1.21956 0.98261 0.78115 1.01985 0.92896 0.92918 0.92977 0.91277 0.90910 0.91797 0.91305 0.91710 0.91547 0.91685 0.89441 0.92075 0.90963 0.92521 0.92302 0.94438 0.90133 0.93027 0.90334 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.76 37.16 0.36 -1.15 16 2 C -0.13 -1.71 4.12 -26.73 -0.11 -1.82 16 3 C -0.07 -0.83 2.93 -89.51 -0.26 -1.10 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.12 -1.17 5.51 -25.07 -0.14 -1.31 16 6 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 7 C -0.11 -1.45 6.29 -25.07 -0.16 -1.61 16 8 C -0.12 -1.55 2.52 -90.65 -0.23 -1.78 16 9 H 0.09 1.10 6.13 -51.93 -0.32 0.79 16 10 C 0.52 9.33 4.69 -10.99 -0.05 9.28 16 11 O -0.55 -11.85 14.71 5.56 0.08 -11.76 16 12 N -0.60 -11.01 2.09 -172.76 -0.36 -11.37 16 13 C 0.11 1.67 5.72 -3.70 -0.02 1.65 16 14 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 15 C -0.11 -2.35 5.00 -26.69 -0.13 -2.49 16 16 C 0.04 0.97 2.13 -91.65 -0.20 0.77 16 17 H 0.03 0.95 8.13 -51.93 -0.42 0.53 16 18 C -0.52 -14.03 8.51 -34.44 -0.29 -14.32 16 19 H 0.06 1.53 7.76 -52.48 -0.41 1.12 16 20 C 0.06 1.78 5.23 -17.82 -0.09 1.69 16 21 N -0.89 -25.26 11.92 55.43 0.66 -24.60 16 22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.12 2.55 5.67 -3.71 -0.02 2.53 16 27 H 0.05 0.49 7.50 -51.93 -0.39 0.10 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.04 7.43 -51.93 -0.39 0.66 16 31 H 0.07 1.04 5.95 -51.93 -0.31 0.73 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.75 7.77 -51.93 -0.40 0.35 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.32 6.79 -51.93 -0.35 0.97 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.90 5.41 -51.93 -0.28 0.62 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 2.02 6.64 -51.93 -0.34 1.68 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.08 1.85 7.00 -51.93 -0.36 1.49 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -29.65 343.18 -9.33 -38.98 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.18 Total: 0.99 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.68 Total: -13.58 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.30 Total: -35.97 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.65 -9.33 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597899533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.919 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds