Wall clock time and date at job start Tue Mar 31 2020 01:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.53005 * 109.47181 * 119.99853 * 2 1 3 5 5 C 1.53004 * 115.56286 * 272.03862 * 4 2 1 6 6 C 1.52994 * 117.49855 * 126.34391 * 4 2 1 7 7 C 1.52993 * 60.00306 * 252.51398 * 6 4 2 8 8 H 1.09000 * 117.50187 * 252.49374 * 7 6 4 9 9 C 1.50700 * 117.49857 * 107.48905 * 7 6 4 10 10 O 1.21272 * 120.00163 * 339.14470 * 9 7 6 11 11 N 1.34776 * 119.99856 * 159.14857 * 9 7 6 12 12 C 1.46925 * 120.63169 * 359.97438 * 11 9 7 13 13 C 1.53200 * 108.77604 * 233.61639 * 12 11 9 14 14 C 1.53035 * 109.31060 * 305.36081 * 13 12 11 15 15 C 1.53046 * 109.53782 * 61.36657 * 14 13 12 16 16 H 1.09004 * 109.49407 * 58.61793 * 15 14 13 17 17 C 1.50697 * 109.49853 * 178.68167 * 15 14 13 18 18 H 1.07997 * 120.00094 * 26.74928 * 17 15 14 19 19 C 1.37877 * 119.99772 * 206.75231 * 17 15 14 20 20 N 1.31513 * 120.00202 * 356.05121 * 19 17 15 21 21 Si 1.86808 * 119.99880 * 176.05059 * 19 17 15 22 22 H 1.48506 * 109.46940 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47108 * 299.99905 * 21 19 17 24 24 H 1.48494 * 109.46952 * 60.00326 * 21 19 17 25 25 C 1.46932 * 120.60696 * 180.02562 * 11 9 7 26 26 H 1.09002 * 109.47422 * 297.94746 * 1 2 3 27 27 H 1.09002 * 109.47101 * 57.94575 * 1 2 3 28 28 H 1.09003 * 109.47499 * 177.94362 * 1 2 3 29 29 H 1.09001 * 109.47318 * 240.00084 * 2 1 3 30 30 H 1.09004 * 109.47317 * 176.28740 * 3 2 1 31 31 H 1.08997 * 109.47362 * 296.28809 * 3 2 1 32 32 H 1.09001 * 109.46902 * 56.29127 * 3 2 1 33 33 H 1.08996 * 109.47271 * 205.69028 * 5 4 2 34 34 H 1.09002 * 109.46781 * 325.68699 * 5 4 2 35 35 H 1.09001 * 109.47026 * 85.68236 * 5 4 2 36 36 H 1.09007 * 117.49507 * 145.01924 * 6 4 2 37 37 H 1.08997 * 117.52088 * 359.97438 * 6 4 2 38 38 H 1.08997 * 109.58698 * 113.82601 * 12 11 9 39 39 H 1.09008 * 109.70656 * 353.46952 * 12 11 9 40 40 H 1.09001 * 109.49472 * 185.41282 * 13 12 11 41 41 H 1.08991 * 109.49577 * 65.31568 * 13 12 11 42 42 H 1.09001 * 109.46505 * 301.34775 * 14 13 12 43 43 H 1.08997 * 109.45181 * 181.37634 * 14 13 12 44 44 H 0.96999 * 120.00176 * 359.49798 * 20 19 17 45 45 H 1.09009 * 109.61196 * 6.61287 * 25 11 9 46 46 H 1.09001 * 109.56157 * 246.19102 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.2138 0.1540 2.4922 6 6 3.0337 -1.8669 1.0474 7 6 1.5922 -2.1688 1.4616 8 1 1.4214 -2.4979 2.4866 9 6 0.6826 -2.7750 0.4242 10 8 0.9476 -2.6638 -0.7540 11 7 -0.4254 -3.4406 0.8058 12 6 -0.7595 -3.5841 2.2293 13 6 -0.9660 -5.0700 2.5400 14 6 -2.0161 -5.6452 1.5870 15 6 -1.5224 -5.5175 0.1440 16 1 -0.5759 -6.0472 0.0352 17 6 -2.5427 -6.1134 -0.7914 18 1 -3.5840 -6.1432 -0.5065 19 6 -2.1468 -6.6205 -2.0108 20 7 -0.8923 -6.5144 -2.3911 21 14 -3.3923 -7.4581 -3.1229 22 1 -2.7192 -7.9117 -4.3665 23 1 -3.9751 -8.6290 -2.4196 24 1 -4.4725 -6.4991 -3.4668 25 6 -1.3213 -4.0374 -0.1943 26 1 -0.3634 0.4816 0.9078 27 1 -0.3633 0.5454 -0.8710 28 1 -0.3634 -1.0270 -0.0369 29 1 1.8933 -0.5138 -0.8900 30 1 3.1280 1.4433 0.0665 31 1 1.7320 1.9368 -0.9213 32 1 1.6233 1.9751 0.8549 33 1 2.9666 -0.2875 3.1451 34 1 2.5333 1.1519 2.1920 35 1 1.2651 0.2211 3.0248 36 1 3.8114 -1.9970 1.8000 37 1 3.3241 -2.1073 0.0247 38 1 -1.6753 -3.0346 2.4469 39 1 0.0549 -3.1931 2.8393 40 1 -1.3080 -5.1824 3.5689 41 1 -0.0245 -5.6033 2.4088 42 1 -2.9502 -5.0951 1.7011 43 1 -2.1827 -6.6964 1.8220 44 1 -0.2470 -6.0730 -1.8169 45 1 -0.8760 -3.9464 -1.1851 46 1 -2.2829 -3.5245 -0.1751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:22 Heat of formation + Delta-G solvation = -31.655905 kcal Electronic energy + Delta-G solvation = -23449.438720 eV Core-core repulsion = 20338.969292 eV Total energy + Delta-G solvation = -3110.469429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41544 -38.18625 -36.40555 -33.70458 -33.28067 -31.75285 -29.88074 -28.78673 -26.82338 -25.51049 -24.67128 -22.92578 -22.45770 -21.82597 -19.98319 -18.77680 -17.88190 -17.12854 -16.50453 -15.59943 -15.19194 -14.45754 -14.18167 -13.91669 -13.76995 -13.74846 -13.58153 -13.34782 -13.09452 -12.70094 -12.55184 -12.47068 -12.05953 -11.81937 -11.61918 -11.55045 -11.29698 -11.12803 -11.00622 -10.81334 -10.61098 -10.57092 -10.40485 -10.11096 -10.01070 -9.94627 -9.61999 -9.26402 -9.17916 -8.50206 -8.46571 -7.84521 -6.35032 -4.08092 2.87362 3.44207 3.45594 3.56231 3.65530 4.00151 4.54146 4.58700 4.70788 4.86356 4.90374 5.06754 5.21026 5.28926 5.36736 5.40710 5.42676 5.48541 5.56097 5.68306 5.69829 5.74176 5.79058 5.88286 5.91630 5.97298 6.01545 6.05504 6.08866 6.14163 6.22101 6.33149 6.41470 6.50281 6.52461 6.58129 6.71300 6.78381 6.90310 7.07470 7.40001 7.55254 8.06666 8.21345 8.43842 8.78023 8.88101 9.65590 11.03874 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.004872 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.566313 B = 5745.836109 C = 6330.403014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.143 4.143 4 C -0.088 4.088 5 C -0.121 4.121 6 C -0.143 4.143 7 C -0.191 4.191 8 H 0.118 0.882 9 C 0.542 3.458 10 O -0.543 6.543 11 N -0.606 5.606 12 C 0.109 3.891 13 C -0.136 4.136 14 C -0.104 4.104 15 C 0.023 3.977 16 H 0.033 0.967 17 C -0.599 4.599 18 H 0.050 0.950 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 1.067 2.933 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.117 3.883 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.273 0.727 45 H 0.084 0.916 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 12.476 11.675 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.200 4.200 4 C -0.089 4.089 5 C -0.177 4.177 6 C -0.180 4.180 7 C -0.212 4.212 8 H 0.136 0.864 9 C 0.330 3.670 10 O -0.421 6.421 11 N -0.338 5.338 12 C -0.014 4.014 13 C -0.175 4.175 14 C -0.142 4.142 15 C 0.003 3.997 16 H 0.051 0.949 17 C -0.638 4.638 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.538 5.538 21 Si 0.895 3.105 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.214 1.214 25 C -0.003 4.003 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.103 0.897 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.030 11.760 9.572 15.975 hybrid contribution 0.006 0.592 1.726 1.825 sum 5.035 12.352 11.298 17.480 Atomic orbital electron populations 1.21932 0.95056 1.02872 1.00695 1.20669 0.95850 0.95135 0.96255 1.21897 1.00721 0.96036 1.01391 1.21514 1.02064 0.87830 0.97476 1.21498 1.01600 0.99633 0.95011 1.23208 0.90428 1.00936 1.03422 1.22578 0.98118 1.00454 1.00024 0.86431 1.19357 0.80964 0.77930 0.88706 1.90680 1.73112 1.60078 1.18272 1.48414 1.24291 1.53594 1.07514 1.21700 1.00363 0.97199 0.82141 1.21993 1.00851 0.95348 0.99275 1.21557 0.96551 0.99643 0.96402 1.19161 0.97661 0.91005 0.91857 0.94863 1.21838 0.94499 1.43430 1.04003 0.93156 1.25862 0.99551 0.95850 0.97131 1.70778 1.02886 1.40838 1.39323 0.83572 0.74582 0.76201 0.76099 1.20780 1.21454 1.21427 1.22331 0.90649 0.95714 0.91642 0.93492 0.92972 0.91561 0.89569 0.92726 0.92847 0.92621 0.92501 0.91047 0.92243 0.88410 0.87662 0.92071 0.90681 0.92082 0.92172 0.93336 0.92729 0.91520 0.89748 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.73 37.15 0.32 -1.86 16 2 C -0.06 -0.82 2.26 -90.62 -0.20 -1.03 16 3 C -0.14 -1.52 7.95 37.16 0.30 -1.22 16 4 C -0.09 -1.09 1.96 -154.51 -0.30 -1.40 16 5 C -0.12 -1.13 9.46 37.16 0.35 -0.78 16 6 C -0.14 -1.86 9.34 -26.74 -0.25 -2.11 16 7 C -0.19 -2.75 5.24 -91.77 -0.48 -3.23 16 8 H 0.12 1.46 5.75 -51.93 -0.30 1.16 16 9 C 0.54 10.34 4.66 -10.99 -0.05 10.29 16 10 O -0.54 -12.36 13.30 5.56 0.07 -12.28 16 11 N -0.61 -11.68 2.96 -172.78 -0.51 -12.19 16 12 C 0.11 1.67 6.34 -3.71 -0.02 1.65 16 13 C -0.14 -2.20 6.08 -26.61 -0.16 -2.36 16 14 C -0.10 -2.09 5.15 -26.69 -0.14 -2.23 16 15 C 0.02 0.56 1.90 -91.67 -0.17 0.38 16 16 H 0.03 0.92 6.86 -51.93 -0.36 0.56 16 17 C -0.60 -16.54 8.32 -34.44 -0.29 -16.83 16 18 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 19 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 20 N -0.90 -27.76 13.61 55.43 0.75 -27.01 16 21 Si 1.07 25.25 29.91 -169.99 -5.08 20.17 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 25 C 0.12 2.74 5.65 -3.73 -0.02 2.72 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.17 4.64 -51.93 -0.24 0.93 16 29 H 0.09 1.41 6.87 -51.93 -0.36 1.05 16 30 H 0.05 0.53 8.11 -51.93 -0.42 0.11 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.52 6.77 -51.93 -0.35 0.17 16 33 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 34 H 0.07 0.60 5.66 -51.93 -0.29 0.31 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 1.02 8.05 -51.92 -0.42 0.60 16 37 H 0.11 1.57 7.72 -51.93 -0.40 1.17 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.94 5.23 -51.92 -0.27 0.67 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.27 8.53 6.40 -40.82 -0.26 8.27 16 45 H 0.08 2.29 6.69 -51.92 -0.35 1.94 16 46 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -31.39 345.46 -8.64 -40.03 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.86 Total: 3.54 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.22 Total: -17.46 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.24 Total: -39.20 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.07 Total: -12.28 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.39 -8.64 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.370 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds