Wall clock time and date at job start Tue Mar 31 2020 01:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 C 1.53005 * 109.47181 * 119.99853 * 2 1 3 5 5 C 1.53004 * 115.56286 * 272.03862 * 4 2 1 6 6 C 1.52994 * 117.49855 * 126.34391 * 4 2 1 7 7 C 1.52993 * 60.00306 * 252.51398 * 6 4 2 8 8 H 1.09000 * 117.50187 * 252.49374 * 7 6 4 9 9 C 1.50700 * 117.49857 * 107.48905 * 7 6 4 10 10 O 1.21272 * 120.00163 * 339.14470 * 9 7 6 11 11 N 1.34776 * 119.99856 * 159.14857 * 9 7 6 12 12 C 1.46925 * 120.63169 * 359.97438 * 11 9 7 13 13 C 1.53200 * 108.77604 * 233.61639 * 12 11 9 14 14 C 1.53035 * 109.31060 * 305.36081 * 13 12 11 15 15 C 1.53046 * 109.53782 * 61.36657 * 14 13 12 16 16 H 1.09004 * 109.49407 * 58.61793 * 15 14 13 17 17 C 1.50697 * 109.49853 * 178.68167 * 15 14 13 18 18 H 1.07997 * 120.00094 * 26.74928 * 17 15 14 19 19 C 1.37877 * 119.99772 * 206.75231 * 17 15 14 20 20 N 1.31513 * 120.00202 * 356.05121 * 19 17 15 21 21 Si 1.86808 * 119.99880 * 176.05059 * 19 17 15 22 22 H 1.48506 * 109.46940 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47108 * 299.99905 * 21 19 17 24 24 H 1.48494 * 109.46952 * 60.00326 * 21 19 17 25 25 C 1.46932 * 120.60696 * 180.02562 * 11 9 7 26 26 H 1.09002 * 109.47422 * 297.94746 * 1 2 3 27 27 H 1.09002 * 109.47101 * 57.94575 * 1 2 3 28 28 H 1.09003 * 109.47499 * 177.94362 * 1 2 3 29 29 H 1.09001 * 109.47318 * 240.00084 * 2 1 3 30 30 H 1.09004 * 109.47317 * 176.28740 * 3 2 1 31 31 H 1.08997 * 109.47362 * 296.28809 * 3 2 1 32 32 H 1.09001 * 109.46902 * 56.29127 * 3 2 1 33 33 H 1.08996 * 109.47271 * 205.69028 * 5 4 2 34 34 H 1.09002 * 109.46781 * 325.68699 * 5 4 2 35 35 H 1.09001 * 109.47026 * 85.68236 * 5 4 2 36 36 H 1.09007 * 117.49507 * 145.01924 * 6 4 2 37 37 H 1.08997 * 117.52088 * 359.97438 * 6 4 2 38 38 H 1.08997 * 109.58698 * 113.82601 * 12 11 9 39 39 H 1.09008 * 109.70656 * 353.46952 * 12 11 9 40 40 H 1.09001 * 109.49472 * 185.41282 * 13 12 11 41 41 H 1.08991 * 109.49577 * 65.31568 * 13 12 11 42 42 H 1.09001 * 109.46505 * 301.34775 * 14 13 12 43 43 H 1.08997 * 109.45181 * 181.37634 * 14 13 12 44 44 H 0.96999 * 120.00176 * 359.49798 * 20 19 17 45 45 H 1.09009 * 109.61196 * 6.61287 * 25 11 9 46 46 H 1.09001 * 109.56157 * 246.19102 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.2138 0.1540 2.4922 6 6 3.0337 -1.8669 1.0474 7 6 1.5922 -2.1688 1.4616 8 1 1.4214 -2.4979 2.4866 9 6 0.6826 -2.7750 0.4242 10 8 0.9476 -2.6638 -0.7540 11 7 -0.4254 -3.4406 0.8058 12 6 -0.7595 -3.5841 2.2293 13 6 -0.9660 -5.0700 2.5400 14 6 -2.0161 -5.6452 1.5870 15 6 -1.5224 -5.5175 0.1440 16 1 -0.5759 -6.0472 0.0352 17 6 -2.5427 -6.1134 -0.7914 18 1 -3.5840 -6.1432 -0.5065 19 6 -2.1468 -6.6205 -2.0108 20 7 -0.8923 -6.5144 -2.3911 21 14 -3.3923 -7.4581 -3.1229 22 1 -2.7192 -7.9117 -4.3665 23 1 -3.9751 -8.6290 -2.4196 24 1 -4.4725 -6.4991 -3.4668 25 6 -1.3213 -4.0374 -0.1943 26 1 -0.3634 0.4816 0.9078 27 1 -0.3633 0.5454 -0.8710 28 1 -0.3634 -1.0270 -0.0369 29 1 1.8933 -0.5138 -0.8900 30 1 3.1280 1.4433 0.0665 31 1 1.7320 1.9368 -0.9213 32 1 1.6233 1.9751 0.8549 33 1 2.9666 -0.2875 3.1451 34 1 2.5333 1.1519 2.1920 35 1 1.2651 0.2211 3.0248 36 1 3.8114 -1.9970 1.8000 37 1 3.3241 -2.1073 0.0247 38 1 -1.6753 -3.0346 2.4469 39 1 0.0549 -3.1931 2.8393 40 1 -1.3080 -5.1824 3.5689 41 1 -0.0245 -5.6033 2.4088 42 1 -2.9502 -5.0951 1.7011 43 1 -2.1827 -6.6964 1.8220 44 1 -0.2470 -6.0730 -1.8169 45 1 -0.8760 -3.9464 -1.1851 46 1 -2.2829 -3.5245 -0.1751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:21 Heat of formation + Delta-G solvation = -49.804993 kcal Electronic energy + Delta-G solvation = -23450.225724 eV Core-core repulsion = 20338.969292 eV Total energy + Delta-G solvation = -3111.256432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76232 -39.56838 -37.93651 -35.59089 -34.43262 -33.41809 -31.64771 -29.70516 -27.78198 -27.18696 -26.45685 -24.40505 -23.53515 -23.42010 -21.59134 -20.09336 -19.30280 -18.74377 -18.20180 -16.86824 -16.62630 -15.95321 -15.67697 -15.62232 -15.32268 -15.12047 -14.94917 -14.64593 -14.13945 -14.06965 -13.80152 -13.48007 -13.36843 -13.32979 -13.27701 -12.84381 -12.66787 -12.42233 -12.29949 -12.15788 -12.06700 -11.98801 -11.87723 -11.75178 -11.59759 -11.18034 -11.05175 -10.82650 -10.65062 -10.61119 -10.38205 -9.50833 -8.66238 -6.38815 1.49328 1.50799 1.58301 1.76801 2.08273 2.55834 2.86383 3.17585 3.47005 3.62139 3.80484 3.82503 3.96704 4.06561 4.09905 4.14151 4.29912 4.35475 4.42389 4.51354 4.57355 4.66851 4.71135 4.74484 4.75932 4.83164 4.88951 4.92975 4.95241 5.00104 5.01145 5.07016 5.10866 5.16511 5.18517 5.22224 5.34696 5.37885 5.49759 5.51354 5.60480 5.62796 6.07095 6.17271 6.55610 6.59730 7.29420 7.44459 8.71809 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023572 B = 0.004872 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.566313 B = 5745.836109 C = 6330.403014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C -0.136 4.136 4 C -0.071 4.071 5 C -0.116 4.116 6 C -0.143 4.143 7 C -0.200 4.200 8 H 0.150 0.850 9 C 0.534 3.466 10 O -0.595 6.595 11 N -0.611 5.611 12 C 0.105 3.895 13 C -0.128 4.128 14 C -0.099 4.099 15 C 0.019 3.981 16 H -0.008 1.008 17 C -0.607 4.607 18 H 0.054 0.946 19 C -0.034 4.034 20 N -0.936 5.936 21 Si 1.114 2.886 22 H -0.289 1.289 23 H -0.265 1.265 24 H -0.270 1.270 25 C 0.137 3.863 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.253 0.747 45 H 0.031 0.969 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 14.160 15.421 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.193 4.193 4 C -0.072 4.072 5 C -0.173 4.173 6 C -0.181 4.181 7 C -0.220 4.220 8 H 0.167 0.833 9 C 0.325 3.675 10 O -0.477 6.477 11 N -0.342 5.342 12 C -0.017 4.017 13 C -0.166 4.166 14 C -0.137 4.137 15 C 0.000 4.000 16 H 0.010 0.990 17 C -0.645 4.645 18 H 0.072 0.928 19 C -0.232 4.232 20 N -0.573 5.573 21 Si 0.936 3.064 22 H -0.215 1.215 23 H -0.189 1.189 24 H -0.195 1.195 25 C 0.014 3.986 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.743 13.454 13.382 19.560 hybrid contribution 0.080 0.086 0.534 0.547 sum 4.823 13.540 13.916 20.007 Atomic orbital electron populations 1.21890 0.95999 1.00704 1.01653 1.20647 0.95075 0.97093 0.95549 1.21850 1.01465 0.93676 1.02309 1.21680 1.00092 0.87127 0.98268 1.21555 1.02950 0.99485 0.93271 1.23294 0.90639 1.01355 1.02769 1.22592 0.97694 1.02262 0.99497 0.83300 1.20262 0.80971 0.77106 0.89175 1.90658 1.74247 1.61784 1.20992 1.48421 1.23879 1.53292 1.08631 1.22060 1.02843 0.97063 0.79684 1.21950 0.98856 0.95348 1.00455 1.21444 0.98231 0.99942 0.94070 1.19127 0.95151 0.90931 0.94799 0.98985 1.22296 0.95259 1.42612 1.04354 0.92819 1.27385 1.00229 0.96366 0.99262 1.70920 1.03904 1.42959 1.39540 0.82989 0.72828 0.76383 0.74242 1.21477 1.18948 1.19474 1.21627 0.90897 0.95379 0.90661 0.90983 0.93589 0.95066 0.93801 0.91561 0.93150 0.90354 0.90510 0.89701 0.91129 0.84803 0.90878 0.90167 0.86756 0.87496 0.93336 0.92421 0.93362 0.93648 0.94991 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.73 71.98 0.63 -3.64 16 2 C -0.07 -1.75 2.26 -10.79 -0.02 -1.77 16 3 C -0.14 -2.59 7.95 71.98 0.57 -2.01 16 4 C -0.07 -1.59 1.96 -52.18 -0.10 -1.69 16 5 C -0.12 -1.58 9.46 71.98 0.68 -0.90 16 6 C -0.14 -3.54 9.34 30.59 0.29 -3.25 16 7 C -0.20 -5.41 5.24 -11.54 -0.06 -5.47 16 8 H 0.15 3.02 5.75 -2.39 -0.01 3.01 16 9 C 0.53 21.04 4.66 87.66 0.41 21.45 16 10 O -0.59 -29.46 13.30 -3.01 -0.04 -29.50 16 11 N -0.61 -23.94 2.96 -818.95 -2.42 -26.36 16 12 C 0.10 2.90 6.34 86.37 0.55 3.45 16 13 C -0.13 -3.79 6.08 30.67 0.19 -3.60 16 14 C -0.10 -3.93 5.15 30.62 0.16 -3.77 16 15 C 0.02 1.00 1.90 -11.47 -0.02 0.98 16 16 H -0.01 -0.48 6.86 -2.38 -0.02 -0.50 16 17 C -0.61 -34.68 8.32 25.60 0.21 -34.47 16 18 H 0.05 2.96 7.82 -2.91 -0.02 2.94 16 19 C -0.03 -2.03 5.46 84.65 0.46 -1.57 16 20 N -0.94 -61.19 13.61 21.45 0.29 -60.90 16 21 Si 1.11 51.88 29.91 68.60 2.05 53.93 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.14 6.80 5.65 86.35 0.49 7.29 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.03 1.13 4.64 -2.39 -0.01 1.12 16 29 H 0.04 1.54 6.87 -2.39 -0.02 1.52 16 30 H 0.07 1.11 8.11 -2.38 -0.02 1.09 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.16 6.77 -2.39 -0.02 1.14 16 33 H 0.08 0.80 7.90 -2.39 -0.02 0.78 16 34 H 0.08 0.98 5.66 -2.39 -0.01 0.96 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.13 2.32 8.05 -2.38 -0.02 2.30 16 37 H 0.07 2.30 7.72 -2.39 -0.02 2.28 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 2.30 5.23 -2.38 -0.01 2.29 16 40 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.25 17.21 6.40 -92.71 -0.59 16.62 16 45 H 0.03 1.89 6.69 -2.38 -0.02 1.87 16 46 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -77.30 345.46 5.42 -71.88 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 1.12 Total: 19.93 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 4.42 Total: -28.98 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -2.13 Total: -87.26 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.04 Total: -29.50 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.05 Total: 53.93 kcal Total: -77.30 5.42 -71.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.071 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds