Wall clock time and date at job start Tue Mar 31 2020 01:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47606 * 2 1 4 4 C 1.52997 * 109.47058 * 120.00339 * 2 1 3 5 5 C 1.52993 * 115.56413 * 34.30735 * 4 2 1 6 6 C 1.53001 * 117.49940 * 248.61654 * 4 2 1 7 7 C 1.52996 * 60.00044 * 252.51116 * 6 4 2 8 8 H 1.09000 * 117.49748 * 107.51862 * 7 6 4 9 9 C 1.50709 * 117.49559 * 252.50400 * 7 6 4 10 10 O 1.21281 * 119.99272 * 68.61723 * 9 7 6 11 11 N 1.34774 * 120.00204 * 248.60690 * 9 7 6 12 12 C 1.46919 * 120.63129 * 0.02562 * 11 9 7 13 13 C 1.53186 * 108.77954 * 126.40868 * 12 11 9 14 14 C 1.53046 * 109.31207 * 54.63337 * 13 12 11 15 15 C 1.53046 * 109.53579 * 298.63381 * 14 13 12 16 16 H 1.08998 * 109.49687 * 301.41384 * 15 14 13 17 17 C 1.50700 * 109.49551 * 181.31590 * 15 14 13 18 18 H 1.07998 * 120.00085 * 240.00030 * 17 15 14 19 19 C 1.37877 * 119.99928 * 60.00313 * 17 15 14 20 20 N 1.31519 * 119.99848 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00125 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46906 * 59.99846 * 21 19 17 23 23 H 1.48497 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47162 * 300.00383 * 21 19 17 25 25 C 1.46927 * 120.62692 * 180.02562 * 11 9 7 26 26 H 1.08989 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47062 * 300.00321 * 1 2 3 28 28 H 1.09003 * 109.46963 * 59.99324 * 1 2 3 29 29 H 1.09004 * 109.47062 * 239.99678 * 2 1 3 30 30 H 1.09000 * 109.47267 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47308 * 300.00111 * 3 2 1 32 32 H 1.09002 * 109.46861 * 60.00174 * 3 2 1 33 33 H 1.08999 * 109.47520 * 205.68797 * 5 4 2 34 34 H 1.09001 * 109.47295 * 325.69251 * 5 4 2 35 35 H 1.08998 * 109.47399 * 85.68975 * 5 4 2 36 36 H 1.09003 * 117.50254 * 145.01669 * 6 4 2 37 37 H 1.09003 * 117.49690 * 359.97438 * 6 4 2 38 38 H 1.09002 * 109.59216 * 6.61793 * 12 11 9 39 39 H 1.09006 * 109.58250 * 246.19688 * 12 11 9 40 40 H 1.09004 * 109.49658 * 294.68126 * 13 12 11 41 41 H 1.08997 * 109.52704 * 174.59556 * 13 12 11 42 42 H 1.08993 * 109.45866 * 58.65556 * 14 13 12 43 43 H 1.09000 * 109.45949 * 178.61892 * 14 13 12 44 44 H 0.97006 * 119.99508 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.58699 * 353.37880 * 25 11 9 46 46 H 1.08997 * 109.58189 * 113.66082 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.1851 -1.8962 1.7283 6 6 2.7419 0.1225 2.3151 7 6 3.5549 -0.8282 1.4342 8 1 4.1887 -0.3847 0.6663 9 6 4.0910 -2.0828 2.0745 10 8 3.3286 -2.9599 2.4213 11 7 5.4176 -2.2301 2.2614 12 6 6.3535 -1.1762 1.8468 13 6 7.2345 -0.8008 3.0425 14 6 7.9091 -2.0609 3.5896 15 6 6.8407 -3.0469 4.0676 16 1 6.2285 -2.5755 4.8365 17 6 7.5065 -4.2736 4.6358 18 1 7.3159 -5.2428 4.1990 19 6 8.3591 -4.1587 5.7132 20 7 8.5908 -2.9786 6.2455 21 14 9.1839 -5.6794 6.4180 22 1 10.0158 -6.3222 5.3691 23 1 10.0447 -5.2896 7.5635 24 1 8.1464 -6.6353 6.8817 25 6 5.9552 -3.4476 2.8838 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.3351 -2.0423 2.7980 34 1 0.1338 -1.6836 1.5345 35 1 1.4775 -2.8001 1.1938 36 1 2.5947 -0.1594 3.3577 37 1 2.8408 1.1914 2.1261 38 1 5.7949 -0.3009 1.5155 39 1 6.9791 -1.5427 1.0328 40 1 6.6186 -0.3505 3.8210 41 1 7.9965 -0.0892 2.7244 42 1 8.5051 -2.5242 2.8034 43 1 8.5558 -1.7929 4.4251 44 1 9.1909 -2.8977 7.0033 45 1 5.1336 -4.0710 3.2366 46 1 6.5460 -4.0007 2.1537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:27 Heat of formation + Delta-G solvation = -28.168576 kcal Electronic energy + Delta-G solvation = -22934.939276 eV Core-core repulsion = 19824.621070 eV Total energy + Delta-G solvation = -3110.318207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.30859 -38.30967 -36.49396 -33.51828 -33.07172 -31.31150 -30.22156 -29.21577 -26.53263 -25.34307 -24.87824 -23.13646 -22.77503 -21.61910 -19.70818 -18.39517 -17.88648 -17.16532 -16.24455 -15.51102 -15.17998 -14.70710 -14.57452 -14.28054 -13.66320 -13.45939 -13.18728 -13.16042 -12.88330 -12.72529 -12.45607 -12.34274 -12.03119 -11.97594 -11.65196 -11.64307 -11.45995 -11.09577 -10.96238 -10.81138 -10.75381 -10.71387 -10.31977 -9.97951 -9.94983 -9.75530 -9.57352 -9.41673 -9.01911 -8.79062 -8.37501 -7.84110 -6.01308 -4.08514 2.93314 3.31692 3.35986 3.38441 3.51766 3.94105 4.42694 4.56395 4.67260 4.83115 4.89620 5.00218 5.13519 5.26544 5.28717 5.45601 5.47445 5.48883 5.61712 5.67774 5.74488 5.77324 5.80378 5.90431 5.93260 6.02258 6.11471 6.13443 6.15809 6.23997 6.31409 6.35474 6.43115 6.50903 6.67048 6.71523 6.83901 7.02065 7.19749 7.35377 7.69538 7.93540 8.07499 8.08987 8.38712 8.74473 8.95180 9.56244 11.04095 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034208 B = 0.003914 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.334627 B = 7151.747084 C = 7597.466643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.151 4.151 4 C -0.088 4.088 5 C -0.106 4.106 6 C -0.151 4.151 7 C -0.183 4.183 8 H 0.118 0.882 9 C 0.537 3.463 10 O -0.547 6.547 11 N -0.600 5.600 12 C 0.110 3.890 13 C -0.134 4.134 14 C -0.112 4.112 15 C 0.041 3.959 16 H 0.028 0.972 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.118 3.882 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.095 0.905 44 H 0.261 0.739 45 H 0.078 0.922 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.456 9.809 -12.059 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.208 4.208 4 C -0.088 4.088 5 C -0.163 4.163 6 C -0.188 4.188 7 C -0.204 4.204 8 H 0.136 0.864 9 C 0.325 3.675 10 O -0.426 6.426 11 N -0.332 5.332 12 C -0.013 4.013 13 C -0.172 4.172 14 C -0.150 4.150 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.553 4.553 18 H 0.074 0.926 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.003 4.003 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.734 9.413 -11.721 18.472 hybrid contribution 0.883 -0.670 0.410 1.182 sum -9.850 8.743 -11.311 17.361 Atomic orbital electron populations 1.21888 0.94833 1.02086 1.01449 1.20601 0.95859 0.95291 0.96075 1.21985 1.01086 0.95990 1.01759 1.21571 0.91235 0.99097 0.96944 1.21439 0.96930 0.95745 1.02191 1.23280 1.01885 0.96944 0.96730 1.22379 0.95352 0.98427 1.04241 0.86447 1.19582 0.82079 0.87134 0.78707 1.90650 1.56332 1.43387 1.52193 1.48241 1.05302 1.20011 1.59617 1.21733 0.91978 0.90048 0.97533 1.21994 0.98338 1.00054 0.96845 1.21629 0.99740 0.93262 1.00397 1.18951 0.92391 0.95128 0.91329 0.95341 1.21049 1.26696 0.93182 1.14411 0.92558 1.24936 0.96501 0.95927 0.96434 1.69870 1.36798 1.22401 1.23724 0.86638 0.79413 0.83283 0.78558 1.20258 1.21311 1.20223 1.21971 0.97844 0.84633 0.95876 0.91959 0.92488 0.92959 0.90925 0.92559 0.92733 0.92115 0.91704 0.92960 0.91583 0.88462 0.87652 0.91032 0.92218 0.92399 0.92580 0.94649 0.88669 0.92939 0.90381 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.20 37.16 0.30 -0.93 16 2 C -0.06 -0.58 3.15 -90.62 -0.29 -0.86 16 3 C -0.15 -1.24 7.79 37.16 0.29 -0.95 16 4 C -0.09 -1.08 2.47 -154.51 -0.38 -1.46 16 5 C -0.11 -1.46 7.73 37.15 0.29 -1.17 16 6 C -0.15 -1.86 8.92 -26.73 -0.24 -2.10 16 7 C -0.18 -2.53 4.33 -91.77 -0.40 -2.92 16 8 H 0.12 1.40 6.28 -51.93 -0.33 1.08 16 9 C 0.54 9.87 7.46 -10.98 -0.08 9.78 16 10 O -0.55 -11.60 12.52 5.56 0.07 -11.53 16 11 N -0.60 -11.36 2.97 -172.78 -0.51 -11.88 16 12 C 0.11 1.75 6.30 -3.72 -0.02 1.73 16 13 C -0.13 -2.42 6.08 -26.61 -0.16 -2.58 16 14 C -0.11 -2.54 4.96 -26.68 -0.13 -2.67 16 15 C 0.04 1.02 2.25 -91.66 -0.21 0.82 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.51 -14.07 8.56 -34.44 -0.29 -14.37 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.09 11.31 55.43 0.63 -24.46 16 21 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.12 2.60 5.65 -3.72 -0.02 2.58 16 26 H 0.06 0.55 6.45 -51.94 -0.33 0.21 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.46 7.07 -51.93 -0.37 0.09 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 6.98 -51.93 -0.36 0.12 16 33 H 0.06 1.03 7.01 -51.93 -0.36 0.66 16 34 H 0.05 0.59 5.59 -51.93 -0.29 0.30 16 35 H 0.07 1.02 7.26 -51.93 -0.38 0.65 16 36 H 0.10 1.35 8.05 -51.93 -0.42 0.93 16 37 H 0.11 1.06 5.85 -51.93 -0.30 0.75 16 38 H 0.07 0.93 5.67 -51.93 -0.29 0.64 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.10 2.44 6.04 -51.93 -0.31 2.12 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.08 1.85 7.01 -51.93 -0.36 1.48 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 343.54 15.07 5.18 5.18 Total: -1.00 -29.40 343.54 -8.98 -38.38 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.88 Total: 1.57 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.44 Total: -13.47 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.11 Total: -36.34 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.07 Total: -11.53 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.40 -8.98 -38.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.211 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds