Wall clock time and date at job start Tue Mar 31 2020 01:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47606 * 2 1 4 4 C 1.52997 * 109.47058 * 120.00339 * 2 1 3 5 5 C 1.52993 * 115.56413 * 34.30735 * 4 2 1 6 6 C 1.53001 * 117.49940 * 248.61654 * 4 2 1 7 7 C 1.52996 * 60.00044 * 252.51116 * 6 4 2 8 8 H 1.09000 * 117.49748 * 107.51862 * 7 6 4 9 9 C 1.50709 * 117.49559 * 252.50400 * 7 6 4 10 10 O 1.21281 * 119.99272 * 68.61723 * 9 7 6 11 11 N 1.34774 * 120.00204 * 248.60690 * 9 7 6 12 12 C 1.46919 * 120.63129 * 0.02562 * 11 9 7 13 13 C 1.53186 * 108.77954 * 126.40868 * 12 11 9 14 14 C 1.53046 * 109.31207 * 54.63337 * 13 12 11 15 15 C 1.53046 * 109.53579 * 298.63381 * 14 13 12 16 16 H 1.08998 * 109.49687 * 301.41384 * 15 14 13 17 17 C 1.50700 * 109.49551 * 181.31590 * 15 14 13 18 18 H 1.07998 * 120.00085 * 240.00030 * 17 15 14 19 19 C 1.37877 * 119.99928 * 60.00313 * 17 15 14 20 20 N 1.31519 * 119.99848 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00125 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46906 * 59.99846 * 21 19 17 23 23 H 1.48497 * 109.47231 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47162 * 300.00383 * 21 19 17 25 25 C 1.46927 * 120.62692 * 180.02562 * 11 9 7 26 26 H 1.08989 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47062 * 300.00321 * 1 2 3 28 28 H 1.09003 * 109.46963 * 59.99324 * 1 2 3 29 29 H 1.09004 * 109.47062 * 239.99678 * 2 1 3 30 30 H 1.09000 * 109.47267 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47308 * 300.00111 * 3 2 1 32 32 H 1.09002 * 109.46861 * 60.00174 * 3 2 1 33 33 H 1.08999 * 109.47520 * 205.68797 * 5 4 2 34 34 H 1.09001 * 109.47295 * 325.69251 * 5 4 2 35 35 H 1.08998 * 109.47399 * 85.68975 * 5 4 2 36 36 H 1.09003 * 117.50254 * 145.01669 * 6 4 2 37 37 H 1.09003 * 117.49690 * 359.97438 * 6 4 2 38 38 H 1.09002 * 109.59216 * 6.61793 * 12 11 9 39 39 H 1.09006 * 109.58250 * 246.19688 * 12 11 9 40 40 H 1.09004 * 109.49658 * 294.68126 * 13 12 11 41 41 H 1.08997 * 109.52704 * 174.59556 * 13 12 11 42 42 H 1.08993 * 109.45866 * 58.65556 * 14 13 12 43 43 H 1.09000 * 109.45949 * 178.61892 * 14 13 12 44 44 H 0.97006 * 119.99508 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.58699 * 353.37880 * 25 11 9 46 46 H 1.08997 * 109.58189 * 113.66082 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.1851 -1.8962 1.7283 6 6 2.7419 0.1225 2.3151 7 6 3.5549 -0.8282 1.4342 8 1 4.1887 -0.3847 0.6663 9 6 4.0910 -2.0828 2.0745 10 8 3.3286 -2.9599 2.4213 11 7 5.4176 -2.2301 2.2614 12 6 6.3535 -1.1762 1.8468 13 6 7.2345 -0.8008 3.0425 14 6 7.9091 -2.0609 3.5896 15 6 6.8407 -3.0469 4.0676 16 1 6.2285 -2.5755 4.8365 17 6 7.5065 -4.2736 4.6358 18 1 7.3159 -5.2428 4.1990 19 6 8.3591 -4.1587 5.7132 20 7 8.5908 -2.9786 6.2455 21 14 9.1839 -5.6794 6.4180 22 1 10.0158 -6.3222 5.3691 23 1 10.0447 -5.2896 7.5635 24 1 8.1464 -6.6353 6.8817 25 6 5.9552 -3.4476 2.8838 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.3351 -2.0423 2.7980 34 1 0.1338 -1.6836 1.5345 35 1 1.4775 -2.8001 1.1938 36 1 2.5947 -0.1594 3.3577 37 1 2.8408 1.1914 2.1261 38 1 5.7949 -0.3009 1.5155 39 1 6.9791 -1.5427 1.0328 40 1 6.6186 -0.3505 3.8210 41 1 7.9965 -0.0892 2.7244 42 1 8.5051 -2.5242 2.8034 43 1 8.5558 -1.7929 4.4251 44 1 9.1909 -2.8977 7.0033 45 1 5.1336 -4.0710 3.2366 46 1 6.5460 -4.0007 2.1537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597904018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:26 Heat of formation + Delta-G solvation = -43.432803 kcal Electronic energy + Delta-G solvation = -22935.601183 eV Core-core repulsion = 19824.621070 eV Total energy + Delta-G solvation = -3110.980113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.58904 -39.59858 -38.02137 -35.37723 -33.99556 -33.02448 -31.98084 -30.18495 -27.60276 -27.00111 -26.36560 -24.34649 -23.82611 -23.25063 -21.33548 -19.70355 -19.04395 -18.63407 -18.08551 -16.77249 -16.54706 -16.47557 -15.85418 -15.34998 -15.11113 -14.97216 -14.61590 -14.46805 -14.25238 -13.91990 -13.70158 -13.63425 -13.44355 -13.30181 -12.87143 -12.75337 -12.64888 -12.51275 -12.45613 -12.22092 -12.02724 -11.86831 -11.83440 -11.59895 -11.51216 -11.24298 -10.96686 -10.86006 -10.61785 -10.44207 -10.33383 -9.45857 -8.12196 -6.27894 1.39866 1.41585 1.49007 1.57345 2.09867 2.42492 2.83881 3.13898 3.49892 3.70476 3.85461 3.97213 4.02198 4.18631 4.26080 4.30336 4.34360 4.46807 4.53215 4.61910 4.70375 4.78026 4.80101 4.85447 4.87310 4.93793 4.96516 4.99924 5.02270 5.09315 5.11449 5.14044 5.23694 5.27576 5.29257 5.47714 5.49963 5.54874 5.56682 5.59417 5.63438 5.91352 6.12029 6.32841 6.61061 6.81364 7.28884 7.40250 8.91233 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.034208 B = 0.003914 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.334627 B = 7151.747084 C = 7597.466643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 C -0.150 4.150 4 C -0.083 4.083 5 C -0.103 4.103 6 C -0.141 4.141 7 C -0.189 4.189 8 H 0.149 0.851 9 C 0.526 3.474 10 O -0.586 6.586 11 N -0.606 5.606 12 C 0.111 3.889 13 C -0.126 4.126 14 C -0.105 4.105 15 C 0.043 3.957 16 H -0.016 1.016 17 C -0.541 4.541 18 H 0.051 0.949 19 C 0.017 3.983 20 N -0.913 5.913 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.276 1.276 25 C 0.131 3.869 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.262 0.738 45 H 0.050 0.950 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.482 11.828 -14.233 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 C -0.207 4.207 4 C -0.084 4.084 5 C -0.159 4.159 6 C -0.178 4.178 7 C -0.209 4.209 8 H 0.166 0.834 9 C 0.317 3.683 10 O -0.467 6.467 11 N -0.338 5.338 12 C -0.011 4.011 13 C -0.164 4.164 14 C -0.144 4.144 15 C 0.024 3.976 16 H 0.002 0.998 17 C -0.580 4.580 18 H 0.069 0.931 19 C -0.182 4.182 20 N -0.552 5.552 21 Si 0.781 3.219 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.202 1.202 25 C 0.008 3.992 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.157 0.843 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.756 11.455 -13.913 20.988 hybrid contribution 0.833 -1.338 1.137 1.944 sum -9.923 10.116 -12.776 19.080 Atomic orbital electron populations 1.21889 0.94093 1.01928 1.02372 1.20629 0.96471 0.96080 0.94228 1.21985 1.01412 0.94619 1.02691 1.21701 0.89878 0.98510 0.98286 1.21350 0.98900 0.95831 0.99867 1.23365 1.00658 0.98362 0.95424 1.22390 0.96671 0.96615 1.05262 0.83366 1.20490 0.81460 0.88305 0.78073 1.90637 1.57183 1.45190 1.53725 1.48328 1.06312 1.19664 1.59451 1.21967 0.91751 0.90580 0.96755 1.21898 0.99065 0.98114 0.97332 1.21424 0.98684 0.94915 0.99346 1.18846 0.92765 0.94788 0.91214 0.99825 1.21419 1.27334 0.93931 1.15282 0.93061 1.25699 0.97015 0.98791 0.96692 1.70008 1.37114 1.24116 1.23917 0.85649 0.78423 0.79747 0.78067 1.19225 1.20632 1.20190 1.21508 0.96388 0.86083 0.95179 0.92688 0.92382 0.91252 0.90767 0.92059 0.91299 0.91766 0.94761 0.90597 0.93882 0.90759 0.84334 0.86959 0.90282 0.93864 0.89183 0.94473 0.91920 0.92886 0.93164 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.20 71.98 0.59 -1.48 16 2 C -0.06 -0.89 3.15 -10.80 -0.03 -0.93 16 3 C -0.15 -1.79 7.79 71.98 0.56 -1.23 16 4 C -0.08 -1.89 2.47 -52.18 -0.13 -2.02 16 5 C -0.10 -2.86 7.73 71.98 0.56 -2.30 16 6 C -0.14 -3.17 8.92 30.59 0.27 -2.89 16 7 C -0.19 -4.80 4.33 -11.54 -0.05 -4.85 16 8 H 0.15 2.85 6.28 -2.39 -0.01 2.84 16 9 C 0.53 19.38 7.46 87.66 0.65 20.04 16 10 O -0.59 -26.04 12.52 -3.03 -0.04 -26.08 16 11 N -0.61 -22.82 2.97 -818.96 -2.43 -25.26 16 12 C 0.11 3.23 6.30 86.36 0.54 3.77 16 13 C -0.13 -4.35 6.08 30.67 0.19 -4.16 16 14 C -0.11 -4.84 4.96 30.63 0.15 -4.69 16 15 C 0.04 2.24 2.25 -11.47 -0.03 2.21 16 16 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 17 C -0.54 -30.72 8.56 25.60 0.22 -30.50 16 18 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 19 C 0.02 0.97 5.30 84.65 0.45 1.42 16 20 N -0.91 -52.94 11.31 21.45 0.24 -52.70 16 21 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 25 C 0.13 6.00 5.65 86.36 0.49 6.49 16 26 H 0.05 0.85 6.45 -2.39 -0.02 0.84 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 30 H 0.06 0.69 7.07 -2.39 -0.02 0.67 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.74 6.98 -2.39 -0.02 0.72 16 33 H 0.03 1.13 7.01 -2.39 -0.02 1.12 16 34 H 0.08 1.69 5.59 -2.39 -0.01 1.68 16 35 H 0.04 1.38 7.26 -2.39 -0.02 1.36 16 36 H 0.07 2.04 8.05 -2.39 -0.02 2.02 16 37 H 0.14 2.21 5.85 -2.39 -0.01 2.19 16 38 H 0.11 2.40 5.67 -2.39 -0.01 2.38 16 39 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 3.29 6.04 -2.39 -0.01 3.28 16 44 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 45 H 0.05 2.54 7.01 -2.39 -0.02 2.52 16 46 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -68.33 343.54 5.18 -63.16 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.94 Total: 15.74 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 4.43 Total: -21.12 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -2.19 Total: -77.96 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.04 Total: -26.08 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.33 5.18 -63.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.724 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds